IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1669	 35.00	0	1799289..1800428	-	379	167627894	-	Fphi_1668	-	protein-disulfide isomerase
1670	 36.08	+1	1800447..1800737	-	96	167627895	-	Fphi_1669	-	hypothetical protein
1671	 32.33	0	1800808..1801908	-	366	167627896	-	Fphi_1670	-	4Fe-4S ferredoxin
1672	 32.44	0	1801911..1802246	-	111	167627897	-	Fphi_1671	-	hypothetical protein
1673	 26.73	-1	1802351..1802683	+	110	167627898	-	Fphi_1672	-	hypothetical protein
1674	 29.69	0	1802702..1804762	+	686	167627899	-	Fphi_1673	-	DNA/RNA helicase superfamily I protein
1675	 34.44	0	1804765..1805214	-	149	167627900	-	Fphi_1674	-	BNR/Asp-box repeat-containing protein
1676	 33.18	0	1805376..1807973	+	865	167627901	-	Fphi_1675	-	alanine--tRNA ligase
1677	 33.19	0	1807977..1809365	+	462	167627902	-	Fphi_1676	-	hypothetical protein
1678	 33.26	0	1809370..1810746	+	458	167627903	-	Fphi_1677	-	leucyl aminopeptidase
1679	 32.40	0	1810836..1811801	+	321	167627904	-	Fphi_1678	-	transaldolase B
1680	 35.82	0	1811815..1812297	+	160	167627905	-	Fphi_1679	-	hypothetical protein
1681	 28.11	-1	1812374..1813120	+	248	167627906	-	Fphi_1680	-	hypothetical protein
1682	 30.56	0	1813114..1815129	+	671	167627907	-	Fphi_1681	-	UvrD/REP superfamily I DNA/RNA helicase
1683	 31.89	0	1815247..1816077	+	276	167627908	-	Fphi_1682	-	hypothetical protein
1684	 35.63	0	1816093..1816746	-	217	167627909	-	Fphi_1683	-	peroxiredoxin, putative
1685	 33.93	0	1817018..1817353	+	111	167627910	-	Fphi_1684	-	30S ribosomal protein S6
1686	 34.25	0	1817369..1817587	+	72	167627911	-	Fphi_1685	-	30S ribosomal protein S18
1687	 37.72	+1	1817606..1818061	+	151	167627912	-	Fphi_1686	-	50S ribosomal protein L9
1688	 34.34	0	1818148..1819542	+	464	167627913	-	Fphi_1687	-	replicative DNA helicase
1689	 33.24	0	1819567..1820679	+	370	167627914	-	Fphi_1688	-	radical SAM superfamily protein
1690	 30.54	0	1820669..1821562	+	297	167627915	-	Fphi_1689	-	type IV pili, pilus assembly protein
1691	 34.31	0	1821555..1822370	+	271	167627916	-	Fphi_1690	-	16S rRNA pseudouridine synthase
1692	 24.76	-2	1822370..1822789	+	139	167627917	-	Fphi_1691	-	hypothetical protein
1693	 28.26	-1	1822770..1823222	+	150	167627918	-	Fphi_1692	-	ribosomal-protein-alanine acetyltransferase
1694	 25.55	-2	1823405..1824046	+	213	167627919	-	Fphi_1693	-	hypothetical protein
1695	 27.85	-1	1824113..1824550	+	145	167627920	-	Fphi_1694	-	hypothetical protein
1696	 30.78	0	1824639..1825616	+	325	167627921	-	Fphi_1695	-	polyprenyl synthetase family protein
1697	 34.08	0	1825637..1826440	-	267	167627922	-	Fphi_1696	-	peptidyl-prolyl cis-trans isomerase family protein
1698	 30.71	0	1826454..1827254	-	266	167627923	-	Fphi_1697	-	ATPase
1699	 28.87	-1	1827238..1827663	-	141	167627924	-	Fphi_1698	-	thioesterase family protein
1700	 35.78	0	1827673..1828284	-	203	167627925	-	Fphi_1699	-	hypothetical protein
1701	 31.96	0	1828284..1829741	-	485	167627926	-	Fphi_1700	-	Serine-type D-Ala-D-Ala carboxypeptidase
1702	 38.38	+1	1829933..1830130	+	65	167627927	-	Fphi_1701	-	30S ribosomal protein S21
1703	 32.89	0	1830193..1830639	+	148	167627928	-	Fphi_1702	-	hypothetical protein
1704	 29.38	-1	1830658..1832478	+	606	167627929	-	Fphi_1703	-	DNA primase
1705	 32.64	0	1832503..1834239	+	578	167627930	-	Fphi_1704	-	RNA polymerase sigma-70 factor
1706	 29.55	0	1834336..1834731	+	131	167627931	-	Fphi_1705	-	hypothetical protein
1707	 30.58	0	1834754..1835371	-	205	167627932	-	Fphi_1706	-	lipoyltransferase
1708	 25.61	-2	1835385..1835669	-	94	167627933	-	Fphi_1707	-	hypothetical protein
1709	 36.78	+1	1835697..1837031	-	444	167627934	-	Fphi_1708	-	Serine-type D-Ala-D-Ala carboxypeptidase
1710	 31.99	0	1837188..1837709	+	173	167627935	-	Fphi_1709	-	inorganic diphosphatase
1711	 29.07	-1	1837797..1838336	+	179	167627936	-	Fphi_1710	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
1712	 28.93	-1	1838345..1838980	+	211	167627937	-	Fphi_1711	-	hypothetical protein
1713	 32.08	0	1838967..1839842	+	291	167627938	-	Fphi_1712	-	hypothetical protein
1714	 36.20	+1	1839861..1840592	+	243	167627939	-	Fphi_1713	-	ABC transporter, ATP-binding protein
1715	 29.65	0	1840625..1841221	+	198	167627940	-	Fphi_1714	-	fumarylacetoacetate hydrolase
1716	 33.55	0	1841229..1843061	+	610	167627941	-	Fphi_1715	-	S-methyl-5-thioadenosine phosphorylase
1717	 33.59	0	1843064..1843840	+	258	167627942	-	Fphi_1716	-	tRNA pseudouridine synthase A
1718	 35.46	0	1843974..1845524	+	516	167627943	-	Fphi_1717	-	bifunctional GMP synthase/glutamine amidotransferase protein
1719	 34.73	0	1845607..1847463	+	618	167627944	-	Fphi_1718	-	1-deoxy-D-xylulose-5-phosphate synthase
1720	 31.57	0	1847582..1848205	+	207	167627945	-	Fphi_1719	-	GDSL-like lipolytic enzyme
1721	 31.67	0	1848217..1848819	-	200	167627946	-	Fphi_1720	-	CBS domain-containing protein
1722	 35.72	0	1849037..1850083	+	348	167627947	-	Fphi_1721	-	Holliday junction DNA helicase B
1723	 28.31	-1	1850099..1850854	-	251	167627948	-	Fphi_1722	-	hypothetical protein
1724	 27.45	-1	1850941..1851144	-	67	167627949	-	Fphi_1723	-	XRE family transcriptional regulator
1725	 28.49	-1	1851155..1851691	-	178	167627950	-	Fphi_1724	-	hypothetical protein
1726	 27.22	-1	1851822..1852769	+	315	167627951	-	Fphi_1725	-	hypothetical protein
1727	 28.57	-1	1852779..1854038	-	419	167627952	-	Fphi_1726	-	sugar:cation symporter family protein
1728	 29.53	0	1854249..1855721	+	490	167627953	-	Fphi_1727	-	alkaline phosphatase
1729	 29.75	0	1855738..1856631	+	297	167627954	-	Fphi_1728	-	drug/metabolite transporter superfamily protein
1730	 33.93	0	1856717..1857730	+	337	167627955	-	Fphi_1729	-	phenylalanyl-tRNA synthetase subunit alpha
1731	 32.24	0	1857751..1860123	+	790	167627956	-	Fphi_1730	-	phenylalanine--tRNA ligase
1732	 28.40	-1	1860159..1860584	-	141	167627957	-	Fphi_1731	-	regulatory protein
1733	 32.92	0	1860723..1861940	+	405	167627958	-	Fphi_1732	-	hypothetical protein
1734	 31.86	0	1861943..1862689	+	248	167627959	-	Fphi_1733	-	zinc (Zn2+)-iron (Fe2+) permease (ZIP) family protein
1735	 31.10	0	1862711..1863697	-	328	167627960	-	Fphi_1734	-	lipoprotein
1736	 30.82	0	1863847..1865277	-	476	167627961	-	Fphi_1735	-	cardiolipin synthetase
1737	 29.91	0	1865342..1866772	-	476	167627962	-	Fphi_1736	-	cardiolipin synthase
1738	 31.96	0	1866826..1868061	-	411	167627963	-	Fphi_1737	-	major facilitator superfamily metabolite/H(+) symporter
1739	 33.68	0	1868128..1868985	+	285	167627964	-	Fphi_1738	-	nucleotide-binding protein
1740	 32.10	0	1869002..1869568	+	188	167627965	-	Fphi_1739	-	deoxycytidine triphosphate deaminase
1741	 31.53	0	1869938..1871596	-	552	167627966	-	Fphi_1740	-	transposase X
1742	 30.26	0	1871617..1872561	-	314	167627967	-	Fphi_1741	-	integrase, catalytic region
1743	 25.66	-2	1872629..1873345	-	238	167627968	-	Fphi_1742	-	hypothetical protein
1744	 28.02	-1	1873435..1873848	-	137	167627969	-	Fphi_1743	-	hypothetical protein
1745	 32.46	0	1873845..1874414	-	189	167627970	-	Fphi_1744	-	invertase/recombinase like protein
1746	 32.14	0	1874593..1874676	+	27	167627971	-	Fphi_1745	-	ArsB arsenite/antimonite exporter
1747	 32.86	0	1874690..1875109	+	139	167627972	-	Fphi_1746	-	arsenate reductase
1748	 34.66	0	1875289..1876869	+	526	167627973	-	Fphi_1747	-	sulphate transporter
1749	 28.87	-1	1876912..1877247	-	111	167627974	-	Fphi_1748	-	hypothetical protein
1750	 30.70	0	1877359..1878192	-	277	167627975	-	Fphi_1749	-	mechanosensitive ion channel family protein
1751	 30.26	0	1878201..1879145	-	314	167627976	-	Fphi_1750	-	integrase, catalytic region
1752	 24.43	-2	1879213..1879605	-	130	167627977	-	Fphi_1919	-	putative lipoprotein
1753	 31.70	0	1879626..1880177	-	183	167627978	-	Fphi_1751	-	rare lipoprotein B family protein
1754	 32.56	0	1880187..1882628	-	813	167627979	-	Fphi_1752	-	leucyl-tRNA synthetase
1755	 34.79	0	1882786..1883196	-	136	167627980	-	Fphi_1753	-	hypothetical protein
1756	 29.90	0	1883196..1883777	-	193	167627981	-	Fphi_1754	-	hypothetical protein
1757	 27.25	-1	1883814..1884224	+	136	167627982	-	Fphi_1755	-	mutator protein
1758	 26.85	-1	1884336..1884767	-	143	167627983	-	Fphi_1756	-	hypothetical protein
1759	 31.23	0	1884946..1886274	+	442	167627984	-	Fphi_1758	-	amino acid transporter (AAT) family protein
1760	 28.13	-1	1886259..1886681	-	140	167627985	-	Fphi_1757	-	hypothetical protein
1761	 33.94	0	1886674..1887000	-	108	167627986	-	Fphi_1759	-	thioredoxin
1762	 30.57	0	1887003..1887689	-	228	167627987	-	Fphi_1760	-	putative lipoprotein
1763	 30.28	0	1887780..1888925	-	381	167627988	-	Fphi_1761	-	SufS activator complex, SufD subunit
1764	 34.40	0	1888939..1889688	-	249	167627989	-	Fphi_1762	-	SufS activator complex, SufC subunit
1765	 35.89	0	1889723..1891168	-	481	167627990	-	Fphi_1763	-	cysteine desulfurase activator complex subunit SufB
1766	 32.60	0	1891172..1891582	-	136	167627991	-	Fphi_1764	-	transcriptional regulator
1767	 29.40	-1	1891735..1893108	+	457	167627992	-	Fphi_1765	-	potassium transporter peripheral membrane component
1768	 31.99	0	1893178..1894596	+	472	167627993	-	Fphi_1766	-	amino acid antiporter
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.