IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1626	 33.85	0	1758582..1759163	-	193	167627851	-	Fphi_1626	-	haloacid dehalogenase-like hydrolase
1627	 37.17	+1	1759305..1759904	+	199	167627852	-	Fphi_1627	-	AhpC/TSA family peroxiredoxin
1628	 33.04	0	1759962..1761338	+	458	167627853	-	Fphi_1628	-	hypothetical protein
1629	 33.33	0	1761442..1761774	+	110	167627854	-	Fphi_1629	-	phosphonoacetate hydrolase
1630	 27.93	-1	1761776..1761997	+	73	167627855	-	Fphi_1630	-	hypothetical protein
1631	 32.57	0	1762002..1763573	+	523	167627856	-	Fphi_1631	-	hypothetical protein
1632	 31.17	0	1763622..1764314	+	230	167627857	-	Fphi_1632	-	DNA-directed DNA polymerase
1633	 32.70	0	1764308..1764781	+	157	167627858	-	Fphi_1633	-	D-alanyl-D-alanine carboxypeptidase
1634	 29.24	-1	1764768..1766183	+	471	167627859	-	Fphi_1634	-	hypothetical protein
1635	 34.50	0	1766354..1767469	+	371	167627860	-	Fphi_1635	-	dehydrogenase
1636	 35.60	0	1767484..1768980	+	498	167627861	-	Fphi_1636	-	NAD-dependent aldehyde dehydrogenase
1637	 32.21	0	1768983..1769783	+	266	167627862	-	Fphi_1637	-	hypothetical protein
1638	 32.23	0	1769882..1770154	+	90	167627863	-	Fphi_1638	-	hypothetical protein
1639	 26.50	-1	1770165..1770896	+	243	167627864	-	Fphi_1639	-	hypothetical protein
1640	 29.11	-1	1770908..1772326	+	472	167627865	-	Fphi_1641	-	hypothetical protein
1641	 28.66	-1	1772316..1773407	-	363	167627866	-	Fphi_1640	-	transcriptional regulator-like protein
1642	 34.10	0	1773292..1773816	+	174	167627867	-	Fphi_1918	-	peroxiredoxin, AhpC-TSA family protein
1643	 33.82	0	1773835..1774449	+	204	167627868	-	Fphi_1642	-	short chain dehydrogenase
1644	 35.63	0	1774611..1776044	+	477	167627869	-	Fphi_1643	-	catalase
1645	 32.46	0	1776228..1776569	+	113	167627870	-	Fphi_1644	-	hypothetical protein
1646	 29.51	0	1776605..1777075	+	156	167627871	-	Fphi_1645	-	glutathione peroxidase
1647	 32.13	0	1777124..1778290	+	388	167627872	-	Fphi_1646	-	hypothetical protein
1648	 32.21	0	1778287..1779357	+	356	167627873	-	Fphi_1647	-	enolase superfamily protein
1649	 30.40	0	1779373..1780020	+	215	167627874	-	Fphi_1648	-	hypothetical protein
1650	 33.06	0	1780451..1781914	+	487	167627875	-	Fphi_1649	-	YjeF-related protein
1651	 25.28	-2	1782057..1783049	+	330	167627876	-	Fphi_1650	-	hypothetical protein
1652	 28.08	-1	1783021..1784220	+	399	167627877	-	Fphi_1651	-	hypothetical protein
1653	 31.89	0	1784514..1785971	+	485	167627878	-	Fphi_1652	-	hypothetical protein
1654	 31.70	0	1786011..1786622	+	203	167627879	-	Fphi_1653	-	hypothetical protein
1655	 31.94	0	1786626..1787630	+	334	167627880	-	Fphi_1654	-	hypothetical protein
1656	 29.67	0	1787611..1787883	+	90	167627881	-	Fphi_1655	-	hypothetical protein
1657	 32.08	0	1788467..1789267	-	266	167627882	-	Fphi_1656	-	hypothetical protein
1658	 34.20	0	1789277..1789852	-	191	167627883	-	Fphi_1657	-	hypothetical protein
1659	 36.82	+1	1790285..1791346	+	353	167627884	-	Fphi_1658	-	radical SAM family protein
1660	 33.06	0	1791383..1792498	-	371	167627885	-	Fphi_1659	-	penicillin V acylase-like protein
1661	 31.35	0	1792577..1792828	+	83	167627886	-	Fphi_1660	-	glutaredoxin like protein
1662	 32.44	0	1792825..1793274	+	149	167627887	-	Fphi_1661	-	thioesterase superfamily protein
1663	 36.72	+1	1793289..1793642	-	117	167627888	-	Fphi_1662	-	hypothetical protein
1664	 33.07	0	1793671..1794423	-	250	167627889	-	Fphi_1663	-	rRNA methyltransferase
1665	 32.87	0	1794561..1796507	+	648	167627890	-	Fphi_1665	-	betaine/carnitine/choline transporter (BCCT) family protein
1666	 30.63	0	1796500..1796979	-	159	167627891	-	Fphi_1664	-	tryptophan-rich sensory protein
1667	 33.45	0	1797107..1797961	+	284	167627892	-	Fphi_1666	-	bifunctional methionine sulfoxide reductase B/A protein
1668	 31.49	0	1797981..1799174	-	397	167627893	-	Fphi_1667	-	drug:H+ antiporter-1 (DHA1) family protein
1669	 35.00	0	1799289..1800428	-	379	167627894	-	Fphi_1668	-	protein-disulfide isomerase
1670	 36.08	+1	1800447..1800737	-	96	167627895	-	Fphi_1669	-	hypothetical protein
1671	 32.33	0	1800808..1801908	-	366	167627896	-	Fphi_1670	-	4Fe-4S ferredoxin
1672	 32.44	0	1801911..1802246	-	111	167627897	-	Fphi_1671	-	hypothetical protein
1673	 26.73	-1	1802351..1802683	+	110	167627898	-	Fphi_1672	-	hypothetical protein
1674	 29.69	0	1802702..1804762	+	686	167627899	-	Fphi_1673	-	DNA/RNA helicase superfamily I protein
1675	 34.44	0	1804765..1805214	-	149	167627900	-	Fphi_1674	-	BNR/Asp-box repeat-containing protein
1676	 33.18	0	1805376..1807973	+	865	167627901	-	Fphi_1675	-	alanine--tRNA ligase
1677	 33.19	0	1807977..1809365	+	462	167627902	-	Fphi_1676	-	hypothetical protein
1678	 33.26	0	1809370..1810746	+	458	167627903	-	Fphi_1677	-	leucyl aminopeptidase
1679	 32.40	0	1810836..1811801	+	321	167627904	-	Fphi_1678	-	transaldolase B
1680	 35.82	0	1811815..1812297	+	160	167627905	-	Fphi_1679	-	hypothetical protein
1681	 28.11	-1	1812374..1813120	+	248	167627906	-	Fphi_1680	-	hypothetical protein
1682	 30.56	0	1813114..1815129	+	671	167627907	-	Fphi_1681	-	UvrD/REP superfamily I DNA/RNA helicase
1683	 31.89	0	1815247..1816077	+	276	167627908	-	Fphi_1682	-	hypothetical protein
1684	 35.63	0	1816093..1816746	-	217	167627909	-	Fphi_1683	-	peroxiredoxin, putative
1685	 33.93	0	1817018..1817353	+	111	167627910	-	Fphi_1684	-	30S ribosomal protein S6
1686	 34.25	0	1817369..1817587	+	72	167627911	-	Fphi_1685	-	30S ribosomal protein S18
1687	 37.72	+1	1817606..1818061	+	151	167627912	-	Fphi_1686	-	50S ribosomal protein L9
1688	 34.34	0	1818148..1819542	+	464	167627913	-	Fphi_1687	-	replicative DNA helicase
1689	 33.24	0	1819567..1820679	+	370	167627914	-	Fphi_1688	-	radical SAM superfamily protein
1690	 30.54	0	1820669..1821562	+	297	167627915	-	Fphi_1689	-	type IV pili, pilus assembly protein
1691	 34.31	0	1821555..1822370	+	271	167627916	-	Fphi_1690	-	16S rRNA pseudouridine synthase
1692	 24.76	-2	1822370..1822789	+	139	167627917	-	Fphi_1691	-	hypothetical protein
1693	 28.26	-1	1822770..1823222	+	150	167627918	-	Fphi_1692	-	ribosomal-protein-alanine acetyltransferase
1694	 25.55	-2	1823405..1824046	+	213	167627919	-	Fphi_1693	-	hypothetical protein
1695	 27.85	-1	1824113..1824550	+	145	167627920	-	Fphi_1694	-	hypothetical protein
1696	 30.78	0	1824639..1825616	+	325	167627921	-	Fphi_1695	-	polyprenyl synthetase family protein
1697	 34.08	0	1825637..1826440	-	267	167627922	-	Fphi_1696	-	peptidyl-prolyl cis-trans isomerase family protein
1698	 30.71	0	1826454..1827254	-	266	167627923	-	Fphi_1697	-	ATPase
1699	 28.87	-1	1827238..1827663	-	141	167627924	-	Fphi_1698	-	thioesterase family protein
1700	 35.78	0	1827673..1828284	-	203	167627925	-	Fphi_1699	-	hypothetical protein
1701	 31.96	0	1828284..1829741	-	485	167627926	-	Fphi_1700	-	Serine-type D-Ala-D-Ala carboxypeptidase
1702	 38.38	+1	1829933..1830130	+	65	167627927	-	Fphi_1701	-	30S ribosomal protein S21
1703	 32.89	0	1830193..1830639	+	148	167627928	-	Fphi_1702	-	hypothetical protein
1704	 29.38	-1	1830658..1832478	+	606	167627929	-	Fphi_1703	-	DNA primase
1705	 32.64	0	1832503..1834239	+	578	167627930	-	Fphi_1704	-	RNA polymerase sigma-70 factor
1706	 29.55	0	1834336..1834731	+	131	167627931	-	Fphi_1705	-	hypothetical protein
1707	 30.58	0	1834754..1835371	-	205	167627932	-	Fphi_1706	-	lipoyltransferase
1708	 25.61	-2	1835385..1835669	-	94	167627933	-	Fphi_1707	-	hypothetical protein
1709	 36.78	+1	1835697..1837031	-	444	167627934	-	Fphi_1708	-	Serine-type D-Ala-D-Ala carboxypeptidase
1710	 31.99	0	1837188..1837709	+	173	167627935	-	Fphi_1709	-	inorganic diphosphatase
1711	 29.07	-1	1837797..1838336	+	179	167627936	-	Fphi_1710	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
1712	 28.93	-1	1838345..1838980	+	211	167627937	-	Fphi_1711	-	hypothetical protein
1713	 32.08	0	1838967..1839842	+	291	167627938	-	Fphi_1712	-	hypothetical protein
1714	 36.20	+1	1839861..1840592	+	243	167627939	-	Fphi_1713	-	ABC transporter, ATP-binding protein
1715	 29.65	0	1840625..1841221	+	198	167627940	-	Fphi_1714	-	fumarylacetoacetate hydrolase
1716	 33.55	0	1841229..1843061	+	610	167627941	-	Fphi_1715	-	S-methyl-5-thioadenosine phosphorylase
1717	 33.59	0	1843064..1843840	+	258	167627942	-	Fphi_1716	-	tRNA pseudouridine synthase A
1718	 35.46	0	1843974..1845524	+	516	167627943	-	Fphi_1717	-	bifunctional GMP synthase/glutamine amidotransferase protein
1719	 34.73	0	1845607..1847463	+	618	167627944	-	Fphi_1718	-	1-deoxy-D-xylulose-5-phosphate synthase
1720	 31.57	0	1847582..1848205	+	207	167627945	-	Fphi_1719	-	GDSL-like lipolytic enzyme
1721	 31.67	0	1848217..1848819	-	200	167627946	-	Fphi_1720	-	CBS domain-containing protein
1722	 35.72	0	1849037..1850083	+	348	167627947	-	Fphi_1721	-	Holliday junction DNA helicase B
1723	 28.31	-1	1850099..1850854	-	251	167627948	-	Fphi_1722	-	hypothetical protein
1724	 27.45	-1	1850941..1851144	-	67	167627949	-	Fphi_1723	-	XRE family transcriptional regulator
1725	 28.49	-1	1851155..1851691	-	178	167627950	-	Fphi_1724	-	hypothetical protein
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.