IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1403	 34.55	0	1531325..1531900	+	191	167627628	-	Fphi_1402	-	co-chaperone GrpE
1404	 37.17	+1	1531997..1533925	+	642	167627629	-	Fphi_1403	-	2-alkenal reductase
1405	 36.44	+1	1534015..1535139	+	374	167627630	-	Fphi_1404	-	heat shock protein DnaJ
1406	 32.38	0	1535276..1535695	-	139	167627631	-	Fphi_1405	-	putative lipoprotein
1407	 33.60	0	1535774..1536523	-	249	167627632	-	Fphi_1406	-	NAD(+) synthase (glutamine-hydrolyzing)
1408	 34.08	0	1536619..1538091	-	490	167627633	-	Fphi_1407	-	outer membrane efflux protein
1409	 34.01	0	1538102..1539142	-	346	167627634	-	Fphi_1408	-	membrane fusion protein
1410	 33.07	0	1539166..1540698	-	510	167627635	-	Fphi_1409	-	drug:H+ antiporter-1 family protein
1411	 38.34	+1	1540845..1541663	+	272	167627636	-	Fphi_1410	-	transcriptional regulator AraC family protein
1412	 29.85	0	1541672..1543363	-	563	167627637	-	Fphi_1411	-	long chain fatty acid CoA ligase
1413	 32.86	0	1543474..1544955	-	493	167627638	-	Fphi_1412	-	alkaline phosphatase
1414	 26.03	-2	1545047..1545772	-	241	167627639	-	Fphi_1413	-	hypothetical protein
1415	 30.42	0	1545843..1546529	+	228	167627640	-	Fphi_1415	-	membrane protein of unknown function
1416	 27.97	-1	1546519..1547226	-	235	167627641	-	Fphi_1414	-	hypothetical protein
1417	 29.51	0	1547231..1547962	-	243	167627642	-	Fphi_1416	-	cell entry related family protein
1418	 31.63	0	1547972..1548733	-	253	167627643	-	Fphi_1417	-	ATP-binding cassette (ABC) superfamily protein
1419	 31.06	0	1548743..1549840	-	365	167627644	-	Fphi_1418	-	ABC-type transport system permease protein
1420	 29.51	0	1549914..1550750	-	278	167627645	-	Fphi_1419	-	hypothetical protein
1421	 33.13	0	1550713..1551699	-	328	167627646	-	Fphi_1420	-	lysozyme
1422	 34.30	0	1551786..1552610	+	274	167627647	-	Fphi_1421	-	competence lipoprotein ComL
1423	 36.11	+1	1552712..1554511	+	599	167627648	-	Fphi_1422	-	FAD binding family protein
1424	 34.64	0	1554675..1556129	-	484	167627649	-	Fphi_1423	-	hypothetical protein
1425	 37.16	+1	1556400..1557653	-	417	167627650	-	Fphi_1424	-	serine hydroxymethyltransferase
1426	 30.95	0	1557756..1558301	+	181	167627651	-	Fphi_1425	-	hypothetical protein
1427	 27.45	-1	1558430..1559737	+	435	167627652	-	Fphi_1426	-	hypothetical protein
1428	 31.07	0	1559997..1560878	+	293	167627653	-	Fphi_1428	-	mannosyltransferase OCH1-like protein
1429	 30.10	0	1560875..1561957	-	360	167627654	-	Fphi_1427	-	hypothetical protein
1430	 33.99	0	1562143..1563207	+	354	167627655	-	Fphi_1429	-	glycosyl transferase group 1 family protein
1431	 30.84	0	1563209..1564411	-	400	167627656	-	Fphi_1430	-	tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase)
1432	 34.30	0	1564412..1565647	-	411	167627657	-	Fphi_1431	-	D-3-phosphoglycerate dehydrogenase
1433	 33.70	0	1565661..1566485	-	274	167627658	-	Fphi_1432	-	thymidylate synthase
1434	 35.07	0	1566470..1567276	-	268	167627659	-	Fphi_1433	-	prolipoprotein diacylglyceryl transferase
1435	 32.32	0	1567295..1569967	-	890	167627660	-	Fphi_1434	-	ribonuclease E
1436	 33.76	0	1570218..1571393	+	391	167627661	-	Fphi_1435	-	cysteine desulfurase
1437	 31.21	0	1571386..1571715	+	109	167627662	-	Fphi_1436	-	hypothetical protein
1438	 30.06	0	1571699..1572400	+	233	167627663	-	Fphi_1437	-	DNA repair protein RecO
1439	 34.25	0	1572410..1573060	-	216	167627664	-	Fphi_1438	-	DedA family protein
1440	 28.71	-1	1573117..1573743	-	208	167627665	-	Fphi_1439	-	DedA family protein
1441	 30.71	0	1573748..1574014	-	88	167627666	-	Fphi_1440	-	hypothetical protein
1442	 28.96	-1	1574018..1574566	-	182	167627667	-	Fphi_1441	-	5-formyltetrahydrofolate cycloligase
1443	 33.52	0	1575007..1575543	+	178	167627668	-	Fphi_1442	-	hypothetical protein
1444	 34.65	0	1575552..1576763	+	403	167627669	-	Fphi_1443	-	2-octaprenyl-6-methoxyphenyl hydroxylase
1445	 32.91	0	1576753..1577934	+	393	167627670	-	Fphi_1444	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
1446	 32.76	0	1577937..1578638	-	233	167627671	-	Fphi_1445	-	acid phosphatase
1447	 30.12	0	1578840..1579928	-	362	167627672	-	Fphi_1446	-	DEAD-box ATP dependent DNA helicase
1448	 33.92	0	1580060..1581076	+	338	167627673	-	Fphi_1447	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
1449	 32.08	0	1581095..1581412	+	105	167627674	-	Fphi_1448	-	hypothetical protein
1450	 34.85	0	1581438..1581635	+	65	167627675	-	Fphi_1449	-	hypothetical protein
1451	 32.19	0	1581750..1582535	+	261	167627676	-	Fphi_1450	-	haloacid dehalogenase-like hydrolase
1452	 30.39	0	1582598..1583311	+	237	167627677	-	Fphi_1451	-	hypothetical protein
1453	 29.53	0	1583308..1583964	+	218	167627678	-	Fphi_1452	-	hypothetical protein
1454	 28.45	-1	1583961..1584677	+	238	167627679	-	Fphi_1453	-	hypothetical protein
1455	 30.38	0	1584849..1585559	-	236	167627680	-	Fphi_1454	-	hypothetical protein
1456	 34.92	0	1585674..1586051	+	125	167627681	-	Fphi_1455	-	lactoylglutathione lyase
1457	 31.06	0	1586051..1586623	+	190	167627682	-	Fphi_1456	-	hypothetical protein
1458	 30.45	0	1586624..1587385	-	253	167627683	-	Fphi_1457	-	S-adenosylmethionine (SAM)-dependent methyltransferase
1459	 28.05	-1	1587394..1587639	-	81	167627684	-	Fphi_1458	-	hypothetical protein
1460	 35.29	0	1587653..1588366	-	237	167627685	-	Fphi_1459	-	hypothetical protein
1461	 37.68	+1	1588512..1589294	+	260	167627686	-	Fphi_1460	-	enoyl-ACP reductase I
1462	 36.34	+1	1589446..1590408	+	320	167627687	-	Fphi_1461	-	metallo-beta-lactamase superfamily protein
1463	 37.58	+1	1590420..1590749	+	109	167627688	-	Fphi_1462	-	hypothetical protein
1464	 32.84	0	1590746..1591558	+	270	167627689	-	Fphi_1463	-	hypothetical protein
1465	 28.04	-1	1591555..1592253	+	232	167627690	-	Fphi_1464	-	hypothetical protein
1466	 36.05	+1	1592264..1592851	+	195	167627691	-	Fphi_1465	-	hypothetical protein
1467	 35.31	0	1592855..1593817	-	320	167627692	-	Fphi_1466	-	arabinose-5-phosphate isomerase
1468	 37.97	+1	1593954..1594622	+	222	167627693	-	Fphi_1467	-	ribulose-phosphate 3-epimerase
1469	 29.97	0	1594603..1596000	+	465	167627694	-	Fphi_1468	-	sugar transferase involved in lipopolysaccharide synthesis
1470	 35.39	0	1595993..1597012	+	339	167627695	-	Fphi_1469	-	UDP-glucose 4-epimerase
1471	 28.66	-1	1597248..1598939	+	563	167627696	-	Fphi_1470	-	ATP-binding cassette (ABC) superfamily protein
1472	 30.38	0	1598979..1600502	+	507	167627697	-	Fphi_1471	-	asparagine synthase (glutamine-hydrolyzing)
1473	 29.26	-1	1600504..1600920	+	138	167627698	-	Fphi_1472	-	putative glycerol-3-phosphate cytidyltransferase
1474	 22.36	-2	1600932..1602134	+	400	167627699	-	Fphi_1473	-	putative teichoic acid biosynthesis protein F
1475	 22.19	-2	1602140..1603099	+	319	167627700	-	Fphi_1474	-	glycosyl transferase family protein
1476	 25.65	-2	1603112..1604218	+	368	167627701	-	Fphi_1475	-	glycosyl transferase, group 1
1477	 24.07	-2	1604242..1604619	+	125	167627702	-	Fphi_1476	-	glycosyl transferase
1478	 27.91	-1	1604855..1604983	+	42	167627703	-	Fphi_1477	-	hypothetical protein
1479	 25.36	-2	1604973..1605812	+	279	167627704	-	Fphi_1478	-	glycosyl transferase family protein
1480	 28.87	-1	1605852..1606949	+	365	167627705	-	Fphi_1479	-	glycosyltransferase-like protein
1481	 27.55	-1	1607013..1607756	+	247	167627706	-	Fphi_1480	-	putative teichuronic acid biosynthesis glycosyl transferase
1482	 30.17	0	1607819..1608481	+	220	167627707	-	Fphi_1481	-	haloacid dehalogenase-like hydrolase
1483	 32.88	0	1608698..1609804	-	368	167627708	-	Fphi_1482	-	ribokinase
1484	 37.48	+1	1610006..1610824	+	272	167627709	-	Fphi_1483	-	peptidase
1485	 35.77	0	1610958..1611818	+	286	167627710	-	Fphi_1484	-	asparaginase
1486	 35.24	0	1612446..1613702	+	418	167627711	-	Fphi_1485	-	major facilitator transporter
1487	 34.00	0	1613794..1615002	+	402	167627712	-	Fphi_1486	-	putative capsule biosynthesis protein
1488	 31.61	0	1615026..1615490	+	154	167627713	-	Fphi_1487	-	capsule biosynthesis protein CapC
1489	 33.00	0	1615492..1616694	+	400	167627714	-	Fphi_1488	-	hypothetical protein
1490	 33.43	0	1616765..1618879	+	704	167627715	-	Fphi_1489	-	GTP diphosphokinase
1491	 29.94	0	1618910..1619410	-	166	167627716	-	Fphi_1490	-	transposase and inactivated derivative
1492	 27.60	-1	1620694..1620885	-	63	167627717	-	Fphi_1491	-	IS1016 family transposase
1493	 29.08	-1	1620998..1621750	+	250	167627718	-	Fphi_1493	-	glycerophosphoryl diester phosphodiesterase
1494	 30.13	0	1621733..1622482	-	249	167627719	-	Fphi_1492	-	hypothetical protein
1495	 36.77	+1	1622607..1625429	+	940	167627720	-	Fphi_1494	-	cyanophycin synthetase
1496	 34.64	0	1625464..1627149	+	561	167627721	-	Fphi_1495	-	Mur ligase family protein
1497	 32.92	0	1627150..1627629	-	159	167627722	-	Fphi_1496	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
1498	 33.33	0	1627640..1628389	-	249	167627723	-	Fphi_1497	-	rhodanese-like family protein
1499	 26.47	-1	1628461..1629072	-	203	167627724	-	Fphi_1498	-	hydroxy/aromatic amino acid permease (HAAAP) family protein
1500	 30.26	0	1629429..1630373	+	314	167627725	-	Fphi_1500	-	integrase, catalytic region
1501	 33.07	0	1630345..1630719	-	124	167627726	-	Fphi_1499	-	hydroxy/aromatic amino acid permease (HAAAP) family protein
1502	 33.54	0	1630801..1632273	-	490	167627727	-	Fphi_1501	-	methionine uptake transporter (MUT) family protein, membrane and periplasmic protein
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.