IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.71   STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1343	 33.59	0	1464732..1465520	-	262	167627568	-	Fphi_1342	-	inositol-phosphate phosphatase
1344	 36.47	+1	1465606..1466658	-	350	167627569	-	Fphi_1343	-	hypothetical protein
1345	 30.25	0	1466770..1467969	-	399	167627570	-	Fphi_1344	-	hypothetical protein
1346	 27.63	-1	1468084..1468767	+	227	167627571	-	Fphi_1346	-	hypothetical protein
1347	 31.21	0	1468760..1469041	-	93	167627572	-	Fphi_1345	-	hypothetical protein
1348	 38.10	+1	1469118..1470377	-	419	167627573	-	Fphi_1347	-	beta-ketoacyl-ACP synthase II
1349	 34.16	0	1470456..1470698	-	80	167627574	-	Fphi_1348	-	acyl carrier protein
1350	 36.16	+1	1470797..1471540	-	247	167627575	-	Fphi_1349	-	beta-ketoacyl-ACP reductase
1351	 36.92	+1	1471554..1472474	-	306	167627576	-	Fphi_1350	-	malonyl-CoA:ACP transacylase
1352	 35.60	0	1472519..1473490	-	323	167627577	-	Fphi_1351	-	Beta-ketoacyl-acyl-carrier-protein synthase I
1353	 35.24	0	1473596..1474642	-	348	167627578	-	Fphi_1352	-	putative glycerol-3-phosphate acyltransferase PlsX
1354	 34.97	0	1474748..1474930	-	60	167627579	-	Fphi_1353	-	50S ribosomal protein L32
1355	 31.79	0	1474974..1475492	-	172	167627580	-	Fphi_1354	-	hypothetical protein
1356	 37.40	+1	1475607..1477598	+	663	167627581	-	Fphi_1355	-	transketolase
1357	 35.53	0	1477635..1478636	+	333	167627582	-	Fphi_1356	-	glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
1358	 36.64	+1	1478656..1479834	+	392	167627583	-	Fphi_1357	-	phosphoglycerate kinase
1359	 36.60	+1	1479850..1481286	+	478	167627584	-	Fphi_1358	-	pyruvate kinase
1360	 38.78	+1	1481297..1482361	+	354	167627585	-	Fphi_1359	-	fructose-1,6-bisphosphate aldolase
1361	 31.69	0	1482468..1483925	-	485	167627586	-	Fphi_1360	-	Alpha,alpha-trehalase
1362	 31.60	0	1483928..1485136	-	402	167627587	-	Fphi_1361	-	fucose permease-like protein
1363	 32.81	0	1485309..1486457	+	382	167627588	-	Fphi_1362	-	anhydro-N-acetylmuramic acid kinase
1364	 31.59	0	1486538..1490272	+	1244	167627589	-	Fphi_1363	-	hypothetical protein
1365	 31.38	0	1490356..1490919	+	187	167627590	-	Fphi_1364	-	intracellular growth locus protein A
1366	 31.69	0	1490932..1492452	+	506	167627591	-	Fphi_1365	-	intracellular growth locus, subunit B
1367	 36.35	+1	1492470..1493099	+	209	167627592	-	Fphi_1366	-	intracellular growth locus, subunit C
1368	 27.90	-1	1493123..1494319	+	398	167627593	-	Fphi_1367	-	intracellular growth locus protein D
1369	 25.97	-2	1494332..1495051	-	239	167627594	-	Fphi_1368	-	hypothetical protein
1370	 27.14	-1	1495069..1496262	-	397	167627595	-	Fphi_1369	-	hypothetical protein
1371	 25.44	-2	1496277..1496897	-	206	167627596	-	Fphi_1370	-	hypothetical protein
1372	 26.05	-2	1496912..1498339	-	475	167627597	-	Fphi_1371	-	hypothetical protein
1373	 35.06	0	1498351..1498872	-	173	167627598	-	Fphi_1372	-	hypothetical protein
1374	 24.24	-2	1498872..1500587	-	571	167627599	-	Fphi_1373	-	hypothetical protein
1375	 31.92	0	1500593..1501087	-	164	167627600	-	Fphi_1374	-	hypothetical protein
1376	 26.72	-1	1501100..1501477	-	125	167627601	-	Fphi_1375	-	hypothetical protein
1377	 26.15	-2	1501467..1504736	-	1089	167627602	-	Fphi_1376	-	hypothetical protein
1378	 28.18	-1	1504740..1507202	-	820	167627603	-	Fphi_1377	-	hypothetical protein
1379	 30.16	0	1512989..1513429	-	146	167627604	-	Fphi_1378	-	hypothetical protein
1380	 29.55	0	1513812..1514735	-	307	167627605	-	Fphi_1379	-	putative cystathionine beta-synthase
1381	 30.75	0	1515199..1516245	-	348	167627606	-	Fphi_1380	-	choloylglycine hydrolase family protein
1382	 29.04	-1	1516378..1517262	+	294	167627607	-	Fphi_1381	-	transcriptional regulator, LysR family protein
1383	 32.59	0	1517465..1518817	-	450	167627608	-	Fphi_1382	-	tRNA modification GTPase TrmE
1384	 25.61	-2	1518820..1519065	-	81	167627609	-	Fphi_1383	-	hypothetical protein
1385	 31.07	0	1519185..1519493	+	102	167627610	-	Fphi_1384	-	sigma54 modulation protein
1386	 25.39	-2	1519525..1519977	+	150	167627611	-	Fphi_1385	-	PEP-dependent sugar phosphotransferase system (PTS), enzyme IIA
1387	 34.27	0	1519970..1520719	+	249	167627612	-	Fphi_1386	-	rRNA methylase
1388	 32.44	0	1520716..1521273	+	185	167627613	-	Fphi_1387	-	ribonuclease H
1389	 30.63	0	1521274..1522533	+	419	167627614	-	Fphi_1389	-	solute:sodium symporter
1390	 28.44	-1	1522528..1523529	-	333	167627615	-	Fphi_1388	-	hypothetical protein
1391	 28.50	-1	1523535..1523927	-	130	167627616	-	Fphi_1390	-	diguanylate cyclase
1392	 26.19	-2	1523988..1524491	+	167	167627617	-	Fphi_1391	-	hypothetical protein
1393	 22.04	-2	1524512..1524697	+	61	167627618	-	Fphi_1393	-	hypothetical protein
1394	 29.89	0	1524669..1525133	-	154	167627619	-	Fphi_1392	-	integrase, catalytic region
1395	 30.05	0	1525187..1525612	-	141	167627620	-	Fphi_1394	-	integrase, catalytic region
1396	 35.85	0	1525726..1526796	+	356	167627621	-	Fphi_1395	-	amidohydrolase
1397	 33.82	0	1526831..1527238	-	135	167627622	-	Fphi_1396	-	ClpXP protease specificity-enhancing factor
1398	 28.32	-1	1527240..1527857	-	205	167627623	-	Fphi_1397	-	macrophage growth locus, protein A
1399	 37.18	+1	1527918..1528307	-	129	167627624	-	Fphi_1398	-	30S ribosomal protein S9
1400	 36.36	+1	1528323..1528751	-	142	167627625	-	Fphi_1399	-	50S ribosomal protein L13
1401	 29.51	0	1528875..1530077	-	400	167627626	-	Fphi_1400	-	protoporphyrinogen oxidase
1402	 32.90	0	1530070..1531221	-	383	167627627	-	Fphi_1401	-	membrane-bound lytic murein transglycosylase
1403	 34.55	0	1531325..1531900	+	191	167627628	-	Fphi_1402	-	co-chaperone GrpE
1404	 37.17	+1	1531997..1533925	+	642	167627629	-	Fphi_1403	-	2-alkenal reductase
1405	 36.44	+1	1534015..1535139	+	374	167627630	-	Fphi_1404	-	heat shock protein DnaJ
1406	 32.38	0	1535276..1535695	-	139	167627631	-	Fphi_1405	-	putative lipoprotein
1407	 33.60	0	1535774..1536523	-	249	167627632	-	Fphi_1406	-	NAD(+) synthase (glutamine-hydrolyzing)
1408	 34.08	0	1536619..1538091	-	490	167627633	-	Fphi_1407	-	outer membrane efflux protein
1409	 34.01	0	1538102..1539142	-	346	167627634	-	Fphi_1408	-	membrane fusion protein
1410	 33.07	0	1539166..1540698	-	510	167627635	-	Fphi_1409	-	drug:H+ antiporter-1 family protein
1411	 38.34	+1	1540845..1541663	+	272	167627636	-	Fphi_1410	-	transcriptional regulator AraC family protein
1412	 29.85	0	1541672..1543363	-	563	167627637	-	Fphi_1411	-	long chain fatty acid CoA ligase
1413	 32.86	0	1543474..1544955	-	493	167627638	-	Fphi_1412	-	alkaline phosphatase
1414	 26.03	-2	1545047..1545772	-	241	167627639	-	Fphi_1413	-	hypothetical protein
1415	 30.42	0	1545843..1546529	+	228	167627640	-	Fphi_1415	-	membrane protein of unknown function
1416	 27.97	-1	1546519..1547226	-	235	167627641	-	Fphi_1414	-	hypothetical protein
1417	 29.51	0	1547231..1547962	-	243	167627642	-	Fphi_1416	-	cell entry related family protein
1418	 31.63	0	1547972..1548733	-	253	167627643	-	Fphi_1417	-	ATP-binding cassette (ABC) superfamily protein
1419	 31.06	0	1548743..1549840	-	365	167627644	-	Fphi_1418	-	ABC-type transport system permease protein
1420	 29.51	0	1549914..1550750	-	278	167627645	-	Fphi_1419	-	hypothetical protein
1421	 33.13	0	1550713..1551699	-	328	167627646	-	Fphi_1420	-	lysozyme
1422	 34.30	0	1551786..1552610	+	274	167627647	-	Fphi_1421	-	competence lipoprotein ComL
1423	 36.11	+1	1552712..1554511	+	599	167627648	-	Fphi_1422	-	FAD binding family protein
1424	 34.64	0	1554675..1556129	-	484	167627649	-	Fphi_1423	-	hypothetical protein
1425	 37.16	+1	1556400..1557653	-	417	167627650	-	Fphi_1424	-	serine hydroxymethyltransferase
1426	 30.95	0	1557756..1558301	+	181	167627651	-	Fphi_1425	-	hypothetical protein
1427	 27.45	-1	1558430..1559737	+	435	167627652	-	Fphi_1426	-	hypothetical protein
1428	 31.07	0	1559997..1560878	+	293	167627653	-	Fphi_1428	-	mannosyltransferase OCH1-like protein
1429	 30.10	0	1560875..1561957	-	360	167627654	-	Fphi_1427	-	hypothetical protein
1430	 33.99	0	1562143..1563207	+	354	167627655	-	Fphi_1429	-	glycosyl transferase group 1 family protein
1431	 30.84	0	1563209..1564411	-	400	167627656	-	Fphi_1430	-	tRNA(Ile)-lysidine synthase (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase)
1432	 34.30	0	1564412..1565647	-	411	167627657	-	Fphi_1431	-	D-3-phosphoglycerate dehydrogenase
1433	 33.70	0	1565661..1566485	-	274	167627658	-	Fphi_1432	-	thymidylate synthase
1434	 35.07	0	1566470..1567276	-	268	167627659	-	Fphi_1433	-	prolipoprotein diacylglyceryl transferase
1435	 32.32	0	1567295..1569967	-	890	167627660	-	Fphi_1434	-	ribonuclease E
1436	 33.76	0	1570218..1571393	+	391	167627661	-	Fphi_1435	-	cysteine desulfurase
1437	 31.21	0	1571386..1571715	+	109	167627662	-	Fphi_1436	-	hypothetical protein
1438	 30.06	0	1571699..1572400	+	233	167627663	-	Fphi_1437	-	DNA repair protein RecO
1439	 34.25	0	1572410..1573060	-	216	167627664	-	Fphi_1438	-	DedA family protein
1440	 28.71	-1	1573117..1573743	-	208	167627665	-	Fphi_1439	-	DedA family protein
1441	 30.71	0	1573748..1574014	-	88	167627666	-	Fphi_1440	-	hypothetical protein
1442	 28.96	-1	1574018..1574566	-	182	167627667	-	Fphi_1441	-	5-formyltetrahydrofolate cycloligase
32.71	MEAN

3.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.