IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.71   STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1295	 32.37	0	1410035..1410553	+	172	167627520	-	Fphi_1294	-	rhodanese-related sulfurtransferase
1296	 34.34	0	1410586..1412277	+	563	167627521	-	Fphi_1295	-	uncharacterized NAD(FAD)-dependent dehydrogenase
1297	 32.75	0	1412314..1413003	+	229	167627522	-	Fphi_1296	-	Zn-dependent hydrolase
1298	 34.13	0	1413005..1413754	+	249	167627523	-	Fphi_1298	-	hypothetical protein
1299	 29.23	-1	1413747..1414355	-	202	167627524	-	Fphi_1297	-	2OG-Fe(II) oxygenase family oxidoreductase
1300	 31.77	0	1414407..1414853	-	148	167627525	-	Fphi_1299	-	hypothetical protein
1301	 33.53	0	1415029..1415541	-	170	167627526	-	Fphi_1300	-	hypothetical protein
1302	 31.34	0	1415558..1415959	-	133	167627527	-	Fphi_1301	-	hypothetical protein
1303	 31.46	0	1416146..1416571	+	141	167627528	-	Fphi_1303	-	transcription termination factor
1304	 30.61	0	1416555..1417325	-	256	167627529	-	Fphi_1302	-	carbon-nitrogen hydrolase
1305	 29.50	0	1417491..1417907	+	138	167627530	-	Fphi_1304	-	hypothetical protein
1306	 35.01	0	1417923..1419056	-	377	167627531	-	Fphi_1305	-	aspartate/tyrosine/aromatic aminotransferase
1307	 30.26	0	1419159..1420103	-	314	167627532	-	Fphi_1306	-	integrase, catalytic region
1308	 28.64	-1	1420204..1422186	-	660	167627533	-	Fphi_1307	-	hypothetical protein
1309	 28.02	-1	1422186..1424123	-	645	167627534	-	Fphi_1308	-	hypothetical protein
1310	 29.00	-1	1424192..1426198	-	668	167627535	-	Fphi_1309	-	hypothetical protein
1311	 36.22	+1	1426332..1428029	-	565	167627536	-	Fphi_1310	-	prolyl-tRNA synthetase
1312	 29.42	-1	1428276..1428812	-	178	167627537	-	Fphi_1311	-	DsbB family disulfide bond formation protein
1313	 33.33	0	1429448..1429864	+	138	167627538	-	Fphi_1312	-	sulfur acceptor protein SufE
1314	 32.28	0	1429864..1430622	+	252	167627539	-	Fphi_1313	-	uroporphyrinogen-III synthase
1315	 31.68	0	1430582..1431667	+	361	167627540	-	Fphi_1314	-	hypothetical protein
1316	 29.36	-1	1431664..1432821	+	385	167627541	-	Fphi_1315	-	hypothetical protein
1317	 33.60	0	1432835..1433593	+	252	167627542	-	Fphi_1316	-	hydroxyacylglutathione hydrolase
1318	 34.44	0	1433600..1434325	-	241	167627543	-	Fphi_1317	-	hypothetical protein
1319	 29.85	0	1434612..1436246	+	544	167627544	-	Fphi_1318	-	hypothetical protein
1320	 26.97	-1	1436758..1437810	+	350	167627545	-	Fphi_1319	-	hypothetical protein
1321	 28.43	-1	1437794..1438405	+	203	167627546	-	Fphi_1320	-	methyltransferase type 11
1322	 34.86	0	1438448..1439101	-	217	167627547	-	Fphi_1321	-	prophage repressor protein
1323	 28.04	-1	1439268..1439645	+	125	167627548	-	Fphi_1322	-	hypothetical protein
1324	 30.43	0	1439649..1440509	-	286	167627549	-	Fphi_1323	-	drug/metabolite exporter
1325	 38.19	+1	1440687..1442273	+	528	167627550	-	Fphi_1324	-	putative glutamate synthase
1326	 26.54	-1	1442302..1443213	-	303	167627551	-	Fphi_1325	-	hypothetical protein
1327	 32.21	0	1443469..1446771	+	1100	167627552	-	Fphi_1326	-	exodeoxyribonuclease V, gamma subunit
1328	 31.24	0	1446758..1447282	+	174	167627553	-	Fphi_1327	-	hypothetical protein
1329	 32.37	0	1447385..1448530	+	381	167627554	-	Fphi_1328	-	choloylglycine hydrolase family protein
1330	 28.07	-1	1448860..1449201	-	113	167627555	-	Fphi_1329	-	hypothetical protein
1331	 36.14	+1	1449211..1450953	-	580	167627556	-	Fphi_1330	-	benzaldehyde lyase, putative
1332	 32.77	0	1451173..1454730	+	1185	167627557	-	Fphi_1331	-	ATP-dependent exoDNAse (exonuclease V) beta subunit
1333	 32.15	0	1454723..1456495	+	590	167627558	-	Fphi_1332	-	exodeoxyribonuclease V
1334	 34.24	0	1456628..1457398	-	256	167627559	-	Fphi_1333	-	pantothenate kinase
1335	 33.63	0	1457402..1457737	-	111	167627560	-	Fphi_1334	-	aspartate alpha-decarboxylase
1336	 31.81	0	1457731..1458516	-	261	167627561	-	Fphi_1335	-	pantoate--beta-alanine ligase
1337	 33.91	0	1458503..1459366	-	287	167627562	-	Fphi_1336	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1338	 33.47	0	1459302..1460018	-	238	167627563	-	Fphi_1337	-	hypothetical protein
1339	 35.20	0	1460313..1462349	+	678	167627564	-	Fphi_1338	-	DNA ligase (NAD(+))
1340	 30.62	0	1462346..1462897	+	183	167627565	-	Fphi_1339	-	hypothetical protein
1341	 29.86	0	1462986..1463474	+	162	167627566	-	Fphi_1341	-	acetyltransferase
1342	 29.26	-1	1463455..1464732	-	425	167627567	-	Fphi_1340	-	tRNA and rRNA cytosine-C5-methylase, sun protein
1343	 33.59	0	1464732..1465520	-	262	167627568	-	Fphi_1342	-	inositol-phosphate phosphatase
1344	 36.47	+1	1465606..1466658	-	350	167627569	-	Fphi_1343	-	hypothetical protein
1345	 30.25	0	1466770..1467969	-	399	167627570	-	Fphi_1344	-	hypothetical protein
1346	 27.63	-1	1468084..1468767	+	227	167627571	-	Fphi_1346	-	hypothetical protein
1347	 31.21	0	1468760..1469041	-	93	167627572	-	Fphi_1345	-	hypothetical protein
1348	 38.10	+1	1469118..1470377	-	419	167627573	-	Fphi_1347	-	beta-ketoacyl-ACP synthase II
1349	 34.16	0	1470456..1470698	-	80	167627574	-	Fphi_1348	-	acyl carrier protein
1350	 36.16	+1	1470797..1471540	-	247	167627575	-	Fphi_1349	-	beta-ketoacyl-ACP reductase
1351	 36.92	+1	1471554..1472474	-	306	167627576	-	Fphi_1350	-	malonyl-CoA:ACP transacylase
1352	 35.60	0	1472519..1473490	-	323	167627577	-	Fphi_1351	-	Beta-ketoacyl-acyl-carrier-protein synthase I
1353	 35.24	0	1473596..1474642	-	348	167627578	-	Fphi_1352	-	putative glycerol-3-phosphate acyltransferase PlsX
1354	 34.97	0	1474748..1474930	-	60	167627579	-	Fphi_1353	-	50S ribosomal protein L32
1355	 31.79	0	1474974..1475492	-	172	167627580	-	Fphi_1354	-	hypothetical protein
1356	 37.40	+1	1475607..1477598	+	663	167627581	-	Fphi_1355	-	transketolase
1357	 35.53	0	1477635..1478636	+	333	167627582	-	Fphi_1356	-	glyceraldehyde-3-phosphate dehydrogenase (phosphorylating)
1358	 36.64	+1	1478656..1479834	+	392	167627583	-	Fphi_1357	-	phosphoglycerate kinase
1359	 36.60	+1	1479850..1481286	+	478	167627584	-	Fphi_1358	-	pyruvate kinase
1360	 38.78	+1	1481297..1482361	+	354	167627585	-	Fphi_1359	-	fructose-1,6-bisphosphate aldolase
1361	 31.69	0	1482468..1483925	-	485	167627586	-	Fphi_1360	-	Alpha,alpha-trehalase
1362	 31.60	0	1483928..1485136	-	402	167627587	-	Fphi_1361	-	fucose permease-like protein
1363	 32.81	0	1485309..1486457	+	382	167627588	-	Fphi_1362	-	anhydro-N-acetylmuramic acid kinase
1364	 31.59	0	1486538..1490272	+	1244	167627589	-	Fphi_1363	-	hypothetical protein
1365	 31.38	0	1490356..1490919	+	187	167627590	-	Fphi_1364	-	intracellular growth locus protein A
1366	 31.69	0	1490932..1492452	+	506	167627591	-	Fphi_1365	-	intracellular growth locus, subunit B
1367	 36.35	+1	1492470..1493099	+	209	167627592	-	Fphi_1366	-	intracellular growth locus, subunit C
1368	 27.90	-1	1493123..1494319	+	398	167627593	-	Fphi_1367	-	intracellular growth locus protein D
1369	 25.97	-2	1494332..1495051	-	239	167627594	-	Fphi_1368	-	hypothetical protein
1370	 27.14	-1	1495069..1496262	-	397	167627595	-	Fphi_1369	-	hypothetical protein
1371	 25.44	-2	1496277..1496897	-	206	167627596	-	Fphi_1370	-	hypothetical protein
1372	 26.05	-2	1496912..1498339	-	475	167627597	-	Fphi_1371	-	hypothetical protein
1373	 35.06	0	1498351..1498872	-	173	167627598	-	Fphi_1372	-	hypothetical protein
1374	 24.24	-2	1498872..1500587	-	571	167627599	-	Fphi_1373	-	hypothetical protein
1375	 31.92	0	1500593..1501087	-	164	167627600	-	Fphi_1374	-	hypothetical protein
1376	 26.72	-1	1501100..1501477	-	125	167627601	-	Fphi_1375	-	hypothetical protein
1377	 26.15	-2	1501467..1504736	-	1089	167627602	-	Fphi_1376	-	hypothetical protein
1378	 28.18	-1	1504740..1507202	-	820	167627603	-	Fphi_1377	-	hypothetical protein
1379	 30.16	0	1512989..1513429	-	146	167627604	-	Fphi_1378	-	hypothetical protein
1380	 29.55	0	1513812..1514735	-	307	167627605	-	Fphi_1379	-	putative cystathionine beta-synthase
1381	 30.75	0	1515199..1516245	-	348	167627606	-	Fphi_1380	-	choloylglycine hydrolase family protein
1382	 29.04	-1	1516378..1517262	+	294	167627607	-	Fphi_1381	-	transcriptional regulator, LysR family protein
1383	 32.59	0	1517465..1518817	-	450	167627608	-	Fphi_1382	-	tRNA modification GTPase TrmE
1384	 25.61	-2	1518820..1519065	-	81	167627609	-	Fphi_1383	-	hypothetical protein
1385	 31.07	0	1519185..1519493	+	102	167627610	-	Fphi_1384	-	sigma54 modulation protein
1386	 25.39	-2	1519525..1519977	+	150	167627611	-	Fphi_1385	-	PEP-dependent sugar phosphotransferase system (PTS), enzyme IIA
1387	 34.27	0	1519970..1520719	+	249	167627612	-	Fphi_1386	-	rRNA methylase
1388	 32.44	0	1520716..1521273	+	185	167627613	-	Fphi_1387	-	ribonuclease H
1389	 30.63	0	1521274..1522533	+	419	167627614	-	Fphi_1389	-	solute:sodium symporter
1390	 28.44	-1	1522528..1523529	-	333	167627615	-	Fphi_1388	-	hypothetical protein
1391	 28.50	-1	1523535..1523927	-	130	167627616	-	Fphi_1390	-	diguanylate cyclase
1392	 26.19	-2	1523988..1524491	+	167	167627617	-	Fphi_1391	-	hypothetical protein
1393	 22.04	-2	1524512..1524697	+	61	167627618	-	Fphi_1393	-	hypothetical protein
1394	 29.89	0	1524669..1525133	-	154	167627619	-	Fphi_1392	-	integrase, catalytic region
32.71	MEAN

3.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.