IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1243	 33.46	0	1354822..1358622	+	1266	167627468	-	Fphi_1242	-	HrpA-like helicase
1244	 33.79	0	1358654..1360414	+	586	167627469	-	Fphi_1243	-	dTDP-glucose 4,6-dehydratase
1245	 34.79	0	1360421..1361038	+	205	167627470	-	Fphi_1244	-	galactosyl transferase
1246	 31.55	0	1361041..1361826	+	261	167627471	-	Fphi_1245	-	UDP-glucose 4-epimerase
1247	 36.32	+1	1361927..1363300	+	457	167627472	-	Fphi_1246	-	mannose-1-phosphate guanylyltransferase (GDP)
1248	 36.49	+1	1363340..1364479	+	379	167627473	-	Fphi_1247	-	GDP-D-mannose dehydratase
1249	 30.53	0	1364526..1364810	+	94	167627474	-	Fphi_1248	-	hypothetical protein
1250	 34.47	0	1364903..1366042	+	379	167627475	-	Fphi_1249	-	GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase
1251	 38.72	+1	1366173..1367063	+	296	167627476	-	Fphi_1250	-	putative glucose-1-phosphate thymidyl transferase
1252	 35.43	0	1367060..1367632	+	190	167627477	-	Fphi_1251	-	dTDP-4-dehydrorhamnose 3,5-epimerase
1253	 32.23	0	1367788..1368693	+	301	167627478	-	Fphi_1252	-	dTDP-4-dehydrorhamnose reductase
1254	 32.73	0	1369083..1370084	+	333	167627479	-	Fphi_1253	-	dTDP-glucose 4,6-dehydratase
1255	 33.08	0	1370094..1370891	+	265	167627480	-	Fphi_1254	-	ABC-2 type transporter
1256	 33.63	0	1370891..1372228	+	445	167627481	-	Fphi_1255	-	ABC-type polysaccharide/polyol phosphate transport system ATPase component-like protein
1257	 32.11	0	1372218..1372625	+	135	167627482	-	Fphi_1256	-	WblP protein
1258	 28.78	-1	1372609..1373289	+	226	167627483	-	Fphi_1257	-	hypothetical protein
1259	 33.11	0	1373298..1374212	+	304	167627484	-	Fphi_1258	-	hypothetical protein
1260	 28.74	-1	1374216..1375151	+	311	167627485	-	Fphi_1259	-	hypothetical protein
1261	 31.97	0	1375155..1376252	+	365	167627486	-	Fphi_1260	-	DegT/DnrJ/EryC1/StrS aminotransferase
1262	 30.31	0	1376242..1377333	+	363	167627487	-	Fphi_1261	-	cell wall biosynthesis glycosyltransferase-like protein
1263	 28.18	-1	1377409..1379700	+	763	167627488	-	Fphi_1262	-	glycosyl transferase, group 1
1264	 25.97	-2	1379694..1380386	+	230	167627489	-	Fphi_1263	-	hypothetical protein
1265	 26.65	-1	1380463..1381584	+	373	167627490	-	Fphi_1264	-	cell wall biosynthesis glycosyltransferase-like protein
1266	 31.30	0	1381621..1382505	+	294	167627491	-	Fphi_1265	-	cell wall biosynthesis glycosyltransferase-like protein
1267	 29.47	-1	1382525..1383274	+	249	167627492	-	Fphi_1266	-	glycosyl transferase family protein
1268	 31.58	0	1383336..1384361	+	341	167627493	-	Fphi_1267	-	glycosyltransferase-like protein
1269	 30.64	0	1384358..1385509	+	383	167627494	-	Fphi_1268	-	glycosyl transferase, group 1
1270	 31.26	0	1385514..1386284	+	256	167627495	-	Fphi_1269	-	glycosyl transferase family protein
1271	 35.96	+1	1386321..1387805	+	494	167627496	-	Fphi_1270	-	phosphomannomutase
1272	 38.40	+1	1387914..1389176	-	420	167627497	-	Fphi_1271	-	transcription termination factor Rho
1273	 35.19	0	1389218..1389541	-	107	167627498	-	Fphi_1272	-	thioredoxin
1274	 35.60	0	1389740..1390666	+	308	167627499	-	Fphi_1273	-	guanosine-5'-triphosphate,3'-diphosphate diphosphatase
1275	 34.30	0	1390712..1391947	+	411	167627500	-	Fphi_1274	-	recombination factor protein RarA
1276	 32.72	0	1392093..1394381	+	762	167627501	-	Fphi_1275	-	hypothetical protein
1277	 33.86	0	1394451..1395407	+	318	167627502	-	Fphi_1276	-	DNA-directed RNA polymerase subunit alpha
1278	 32.05	0	1395590..1396993	+	467	167627503	-	Fphi_1277	-	major facilitator transporter
1279	 32.94	0	1397072..1397842	+	256	167627504	-	Fphi_1278	-	TatD family hydrolase
1280	 31.13	0	1397854..1398171	+	105	167627505	-	Fphi_1279	-	hypothetical protein
1281	 32.41	0	1398182..1398616	-	144	167627506	-	Fphi_1280	-	hypothetical protein
1282	 30.97	0	1398849..1399610	+	253	167627507	-	Fphi_1281	-	hypothetical protein
1283	 34.63	0	1399767..1400228	+	153	167627508	-	Fphi_1282	-	hypothetical protein
1284	 31.93	0	1400319..1401242	+	307	167627509	-	Fphi_1283	-	ATP-binding cassette (ABC) superfamily protein
1285	 31.03	0	1401251..1402030	+	259	167627510	-	Fphi_1284	-	ATP-binding cassette (ABC) superfamily protein
1286	 34.71	0	1402037..1402981	-	314	167627511	-	Fphi_1285	-	glycosyl transferase
1287	 35.34	0	1403155..1404051	+	298	167627512	-	Fphi_1287	-	inorganic phosphate/ATP-NAD kinase
1288	 30.97	0	1404048..1404683	-	211	167627513	-	Fphi_1286	-	homoserine/threonine efflux family protein
1289	 31.16	0	1404753..1405442	+	229	167627514	-	Fphi_1288	-	tRNA (guanine-N(7)-)-methyltransferase
1290	 29.85	0	1405452..1406168	+	238	167627515	-	Fphi_1289	-	hypothetical protein
1291	 32.56	0	1406172..1406687	+	171	167627516	-	Fphi_1290	-	acetyltransferase
1292	 33.03	0	1406853..1408166	+	437	167627517	-	Fphi_1291	-	guanine deaminase
1293	 32.86	0	1408294..1409571	+	425	167627518	-	Fphi_1292	-	hypothetical protein
1294	 30.39	0	1409662..1409967	+	101	167627519	-	Fphi_1293	-	ArsR family transcriptional regulator
1295	 32.37	0	1410035..1410553	+	172	167627520	-	Fphi_1294	-	rhodanese-related sulfurtransferase
1296	 34.34	0	1410586..1412277	+	563	167627521	-	Fphi_1295	-	uncharacterized NAD(FAD)-dependent dehydrogenase
1297	 32.75	0	1412314..1413003	+	229	167627522	-	Fphi_1296	-	Zn-dependent hydrolase
1298	 34.13	0	1413005..1413754	+	249	167627523	-	Fphi_1298	-	hypothetical protein
1299	 29.23	-1	1413747..1414355	-	202	167627524	-	Fphi_1297	-	2OG-Fe(II) oxygenase family oxidoreductase
1300	 31.77	0	1414407..1414853	-	148	167627525	-	Fphi_1299	-	hypothetical protein
1301	 33.53	0	1415029..1415541	-	170	167627526	-	Fphi_1300	-	hypothetical protein
1302	 31.34	0	1415558..1415959	-	133	167627527	-	Fphi_1301	-	hypothetical protein
1303	 31.46	0	1416146..1416571	+	141	167627528	-	Fphi_1303	-	transcription termination factor
1304	 30.61	0	1416555..1417325	-	256	167627529	-	Fphi_1302	-	carbon-nitrogen hydrolase
1305	 29.50	0	1417491..1417907	+	138	167627530	-	Fphi_1304	-	hypothetical protein
1306	 35.01	0	1417923..1419056	-	377	167627531	-	Fphi_1305	-	aspartate/tyrosine/aromatic aminotransferase
1307	 30.26	0	1419159..1420103	-	314	167627532	-	Fphi_1306	-	integrase, catalytic region
1308	 28.64	-1	1420204..1422186	-	660	167627533	-	Fphi_1307	-	hypothetical protein
1309	 28.02	-1	1422186..1424123	-	645	167627534	-	Fphi_1308	-	hypothetical protein
1310	 29.00	-1	1424192..1426198	-	668	167627535	-	Fphi_1309	-	hypothetical protein
1311	 36.22	+1	1426332..1428029	-	565	167627536	-	Fphi_1310	-	prolyl-tRNA synthetase
1312	 29.42	-1	1428276..1428812	-	178	167627537	-	Fphi_1311	-	DsbB family disulfide bond formation protein
1313	 33.33	0	1429448..1429864	+	138	167627538	-	Fphi_1312	-	sulfur acceptor protein SufE
1314	 32.28	0	1429864..1430622	+	252	167627539	-	Fphi_1313	-	uroporphyrinogen-III synthase
1315	 31.68	0	1430582..1431667	+	361	167627540	-	Fphi_1314	-	hypothetical protein
1316	 29.36	-1	1431664..1432821	+	385	167627541	-	Fphi_1315	-	hypothetical protein
1317	 33.60	0	1432835..1433593	+	252	167627542	-	Fphi_1316	-	hydroxyacylglutathione hydrolase
1318	 34.44	0	1433600..1434325	-	241	167627543	-	Fphi_1317	-	hypothetical protein
1319	 29.85	0	1434612..1436246	+	544	167627544	-	Fphi_1318	-	hypothetical protein
1320	 26.97	-1	1436758..1437810	+	350	167627545	-	Fphi_1319	-	hypothetical protein
1321	 28.43	-1	1437794..1438405	+	203	167627546	-	Fphi_1320	-	methyltransferase type 11
1322	 34.86	0	1438448..1439101	-	217	167627547	-	Fphi_1321	-	prophage repressor protein
1323	 28.04	-1	1439268..1439645	+	125	167627548	-	Fphi_1322	-	hypothetical protein
1324	 30.43	0	1439649..1440509	-	286	167627549	-	Fphi_1323	-	drug/metabolite exporter
1325	 38.19	+1	1440687..1442273	+	528	167627550	-	Fphi_1324	-	putative glutamate synthase
1326	 26.54	-1	1442302..1443213	-	303	167627551	-	Fphi_1325	-	hypothetical protein
1327	 32.21	0	1443469..1446771	+	1100	167627552	-	Fphi_1326	-	exodeoxyribonuclease V, gamma subunit
1328	 31.24	0	1446758..1447282	+	174	167627553	-	Fphi_1327	-	hypothetical protein
1329	 32.37	0	1447385..1448530	+	381	167627554	-	Fphi_1328	-	choloylglycine hydrolase family protein
1330	 28.07	-1	1448860..1449201	-	113	167627555	-	Fphi_1329	-	hypothetical protein
1331	 36.14	+1	1449211..1450953	-	580	167627556	-	Fphi_1330	-	benzaldehyde lyase, putative
1332	 32.77	0	1451173..1454730	+	1185	167627557	-	Fphi_1331	-	ATP-dependent exoDNAse (exonuclease V) beta subunit
1333	 32.15	0	1454723..1456495	+	590	167627558	-	Fphi_1332	-	exodeoxyribonuclease V
1334	 34.24	0	1456628..1457398	-	256	167627559	-	Fphi_1333	-	pantothenate kinase
1335	 33.63	0	1457402..1457737	-	111	167627560	-	Fphi_1334	-	aspartate alpha-decarboxylase
1336	 31.81	0	1457731..1458516	-	261	167627561	-	Fphi_1335	-	pantoate--beta-alanine ligase
1337	 33.91	0	1458503..1459366	-	287	167627562	-	Fphi_1336	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
1338	 33.47	0	1459302..1460018	-	238	167627563	-	Fphi_1337	-	hypothetical protein
1339	 35.20	0	1460313..1462349	+	678	167627564	-	Fphi_1338	-	DNA ligase (NAD(+))
1340	 30.62	0	1462346..1462897	+	183	167627565	-	Fphi_1339	-	hypothetical protein
1341	 29.86	0	1462986..1463474	+	162	167627566	-	Fphi_1341	-	acetyltransferase
1342	 29.26	-1	1463455..1464732	-	425	167627567	-	Fphi_1340	-	tRNA and rRNA cytosine-C5-methylase, sun protein
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.