IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.71   STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
77	 26.77	-1	77493..78710	-	405	167626302	-	Fphi_0081	-	hypothetical protein
78	 26.70	-1	78747..79937	-	396	167626303	-	Fphi_0082	-	hypothetical protein
79	 29.07	-1	80040..81281	-	413	167626304	-	Fphi_0083	-	major facilitator transporter
80	 33.41	0	81294..82571	-	425	167626305	-	Fphi_0084	-	metabolite:H+ symporter (MHS) family protein
81	 30.26	0	82743..83687	+	314	167626306	-	Fphi_0085	-	integrase, catalytic region
82	 30.82	0	83708..84463	-	251	167626307	-	Fphi_0086	-	UBA/ThiF-type NAD/FAD binding fold
83	 31.00	0	84464..85921	-	485	167626308	-	Fphi_0087	-	thiamine-phosphate pyrophosphorylase/thiamine-phosphate pyrophosphorylase
84	 35.13	0	85933..86712	-	259	167626309	-	Fphi_0088	-	ThiG protein thiamine biosynthesis
85	 26.87	-1	86716..86916	-	66	167626310	-	Fphi_1923	-	hypothetical protein
86	 32.00	0	86919..87971	-	350	167626311	-	Fphi_0089	-	thiamine biosynthesis protein ThiO
87	 34.12	0	87964..89742	-	592	167626312	-	Fphi_0090	-	thiamin biosynthesis protein
88	 32.71	0	89995..90792	-	265	167626313	-	Fphi_0091	-	glutamate racemase
89	 29.70	0	90792..91589	-	265	167626314	-	Fphi_0092	-	membrane protein of unknown function
90	 35.18	0	91623..93629	-	668	167626315	-	Fphi_0093	-	excinuclease ABC subunit B
91	 31.61	0	93630..95078	-	482	167626316	-	Fphi_0094	-	exodeoxyribonuclease I
92	 34.30	0	95228..95950	-	240	167626317	-	Fphi_0095	-	oxidoreductase, short-chain dehydrogenase family protein
93	 31.24	0	96066..96974	+	302	167626318	-	Fphi_0096	-	LysR family transcriptional regulator
94	 27.85	-1	96976..97869	-	297	167626319	-	Fphi_0097	-	hypothetical protein
95	 27.87	-1	97856..98935	-	359	167626320	-	Fphi_0098	-	hypothetical protein
96	 36.46	+1	99079..100962	+	627	167626321	-	Fphi_0099	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
97	 34.36	0	100975..101364	+	129	167626322	-	Fphi_0100	-	lipoprotein
98	 27.57	-1	101384..102754	+	456	167626323	-	Fphi_0101	-	hypothetical protein
99	 31.11	0	102756..103430	+	224	167626324	-	Fphi_0102	-	ribose-5-phosphate isomerase A
100	 30.79	0	103439..104302	-	287	167626325	-	Fphi_0103	-	pirin-related protein
101	 29.87	0	104341..105378	-	345	167626326	-	Fphi_0104	-	threonine aldolase
102	 30.97	0	105567..106370	+	267	167626327	-	Fphi_0105	-	hypothetical protein
103	 28.91	-1	106388..107020	-	210	167626328	-	Fphi_0106	-	hypothetical protein
104	 38.10	+1	107128..107484	-	118	167626329	-	Fphi_0107	-	50S ribosomal protein L20
105	 36.87	+1	107520..107717	-	65	167626330	-	Fphi_0108	-	50S ribosomal protein L35
106	 41.03	+2	107762..108229	-	155	167626331	-	Fphi_0109	-	translation initiation factor IF-3
107	 34.54	0	108308..110215	-	635	167626332	-	Fphi_0110	-	threonyl-tRNA synthetase
108	 33.84	0	110658..112445	+	595	167626333	-	Fphi_0111	-	chitin-binding protein
109	 23.23	-2	112657..112953	-	98	167626334	-	Fphi_0112	-	hypothetical protein
110	 28.61	-1	112943..113323	-	126	167626335	-	Fphi_0113	-	glycine cleavage system protein H
111	 32.80	0	113429..114544	+	371	167626336	-	Fphi_0114	-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
112	 36.01	+1	114555..114890	+	111	167626337	-	Fphi_0115	-	hypothetical protein
113	 31.02	0	114890..115495	+	201	167626338	-	Fphi_0116	-	recombination protein RecR
114	 33.50	0	116287..118065	+	592	167626339	-	Fphi_0117	-	type IV pili ATPase
115	 32.52	0	118076..119308	+	410	167626340	-	Fphi_0118	-	type IV pili polytopic inner membrane protein
116	 30.26	0	119722..120666	+	314	167626341	-	Fphi_0119	-	integrase, catalytic region
117	 36.74	+1	121025..122197	-	390	167626342	-	Fphi_0120	-	outer membrane associated protein
118	 32.52	0	122297..122542	-	81	167626343	-	Fphi_0121	-	4Fe-4S ferredoxin
119	 31.90	0	122544..123032	-	162	167626344	-	Fphi_0122	-	pantetheine-phosphate adenylyltransferase
120	 36.23	+1	123040..123591	-	183	167626345	-	Fphi_0123	-	hypothetical protein
121	 31.64	0	123603..123956	-	117	167626346	-	Fphi_0124	-	hypothetical protein
122	 32.52	0	123984..125207	-	407	167626347	-	Fphi_0125	-	SufS subfamily cysteine desulfurase
123	 34.35	0	125315..126688	-	457	167626348	-	Fphi_0126	-	L-serine ammonia-lyase
124	 26.91	-1	126741..127409	-	222	167626349	-	Fphi_0127	-	hypothetical protein
125	 32.95	0	127413..128990	-	525	167626350	-	Fphi_0128	-	2', 3'-cyclic nucleotide 2'-phosphodiesterase
126	 30.96	0	128990..129832	-	280	167626351	-	Fphi_0129	-	prephenate dehydratase
127	 34.76	0	129901..131511	-	536	167626352	-	Fphi_0130	-	amino acid-polyamine-organocation (APC) superfamily protein
128	 33.24	0	131591..132688	-	365	167626353	-	Fphi_0131	-	alanine racemase
129	 31.12	0	132701..134194	-	497	167626354	-	Fphi_0132	-	alkaline phosphatase
130	 32.91	0	134316..135026	-	236	167626355	-	Fphi_0133	-	hypothetical protein
131	 28.71	-1	135023..135433	-	136	167626356	-	Fphi_0134	-	hypothetical protein
132	 31.05	0	135443..136537	+	364	167626357	-	Fphi_0136	-	hypothetical protein
133	 29.65	0	136523..137173	-	216	167626358	-	Fphi_0135	-	HAD-superfamily hydrolase
134	 29.74	0	137180..137986	-	268	167626359	-	Fphi_0137	-	lignostilbene-alpha beta-dioxygenase-like protein
135	 30.26	0	138103..139047	+	314	167626360	-	Fphi_0139	-	integrase, catalytic region
136	 30.11	0	139019..139453	-	144	167626361	-	Fphi_0138	-	hypothetical protein
137	 30.26	0	139671..140615	+	314	167626362	-	Fphi_0140	-	integrase, catalytic region
138	 34.05	0	140852..141973	+	373	167626363	-	Fphi_0141	-	ATP-binding cassette putrescine uptake system, ATP-binding protein
139	 31.97	0	141973..142854	+	293	167626364	-	Fphi_0142	-	ATP-binding cassette putrescine uptake system, membrane protein, subunit H
140	 33.21	0	142867..143670	+	267	167626365	-	Fphi_0143	-	ornithine carbamoyltransferase
141	 29.48	-1	143676..144272	-	198	167626366	-	Fphi_0144	-	putative threonine efflux protein
142	 38.04	+1	144401..144655	-	84	167626367	-	Fphi_0145	-	50S ribosomal protein L27
143	 38.10	+1	144686..145000	-	104	167626368	-	Fphi_0146	-	50S ribosomal protein L21
144	 31.23	0	145220..145789	-	189	167626369	-	Fphi_0147	-	DNA-3-methyladenine glycosylase I
145	 30.77	0	145970..146515	+	181	167626370	-	Fphi_0148	-	hypothetical protein
146	 35.10	0	146686..149409	-	907	167626371	-	Fphi_0149	-	preprotein translocase subunit SecA
147	 28.48	-1	149542..150591	+	349	167626372	-	Fphi_0150	-	hypothetical protein
148	 26.30	-1	150598..151038	+	146	167626373	-	Fphi_0151	-	hypothetical protein
149	 32.92	0	151044..151766	-	240	167626374	-	Fphi_0152	-	purine-nucleoside phosphorylase
150	 38.67	+1	151970..153919	-	649	167626375	-	Fphi_0153	-	microtubule-severing ATPase
151	 31.39	0	154121..155512	+	463	167626376	-	Fphi_0154	-	major facilitator superfamily transporter
152	 35.07	0	155513..158335	-	940	167626377	-	Fphi_0155	-	excinuclease ABC, subunit A
153	 35.40	0	158373..158855	-	160	167626378	-	Fphi_0156	-	GreA/GreB family elongation factor
154	 33.68	0	158892..159476	-	194	167626379	-	Fphi_0157	-	type IV pili, pilus assembly protein
155	 34.38	0	159476..161098	-	540	167626380	-	Fphi_0158	-	glucose-6-phosphate isomerase
156	 28.90	-1	161085..161738	-	217	167626381	-	Fphi_0159	-	thiamine pyrophosphokinase
157	 39.15	+1	161800..163260	-	486	167626382	-	Fphi_0160	-	malate dehydrogenase
158	 35.69	0	163364..164803	-	479	167626383	-	Fphi_0161	-	leucyl aminopeptidase
159	 33.24	0	164969..166051	+	360	167626384	-	Fphi_0162	-	membrane protein of unknown function
160	 31.82	0	166052..167110	+	352	167626385	-	Fphi_0163	-	membrane protein of unknown function
161	 31.82	0	167120..168373	+	417	167626386	-	Fphi_0164	-	M16 family metallopeptidase
162	 29.17	-1	168379..169602	+	407	167626387	-	Fphi_0165	-	M16 family metallopeptidase
163	 27.46	-1	169603..170181	+	192	167626388	-	Fphi_0166	-	N6-adenine-specific methylase
164	 32.26	0	170214..170864	+	216	167626389	-	Fphi_0167	-	hypothetical protein
165	 33.00	0	170923..171531	-	202	167626390	-	Fphi_0168	-	tRNA-(ms(2)io(6)a)-hydroxylase
166	 34.20	0	171644..172447	+	267	167626391	-	Fphi_0169	-	uridine phosphorylase
167	 34.33	0	172464..172865	+	133	167626392	-	Fphi_0170	-	cytidine deaminase
168	 33.37	0	173175..176207	-	1010	167626393	-	Fphi_0171	-	D-lactate dehydrogenase (cytochrome)
169	 35.15	0	176420..177958	+	512	167626394	-	Fphi_0172	-	phosphoglyceromutase
170	 34.89	0	177973..179253	+	426	167626395	-	Fphi_0173	-	seryl-tRNA synthetase
171	 35.12	0	179354..180250	+	298	167626396	-	Fphi_0174	-	ROK family protein
172	 31.43	0	180336..181595	+	419	167626397	-	Fphi_0175	-	multidrug/oligosaccharidyl-lipid/polysaccharide (MOP) transporter
173	 29.90	0	181598..181801	-	67	167626398	-	Fphi_0176	-	hypothetical protein
174	 32.10	0	181821..182225	-	134	167626399	-	Fphi_0177	-	hypothetical protein
175	 34.19	0	182272..182505	-	77	167626400	-	Fphi_0178	-	hypothetical protein
176	 33.56	0	182698..184479	+	593	167626401	-	Fphi_0179	-	cysteine/glutathione ABC transporter membrane/ATP-binding component
32.71	MEAN

3.22	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.