IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1146	 34.28	0	1237389..1244282	+	2297	167627371	-	Fphi_1146	-	polyketide synthase modules
1147	 34.73	0	1244282..1245571	+	429	167627372	-	Fphi_1147	-	8-amino-7-oxononanoate synthase
1148	 31.22	0	1245579..1246193	+	204	167627373	-	Fphi_1148	-	hypothetical protein
1149	 29.86	0	1246242..1246529	+	95	167627374	-	Fphi_1149	-	oligoketide cyclase/lipid transport protein
1150	 31.37	0	1246694..1248067	-	457	167627375	-	Fphi_1150	-	putative cytochrome P450
1151	 26.97	-1	1248071..1249138	-	355	167627376	-	Fphi_1151	-	hypothetical protein
1152	 30.62	0	1249183..1250580	-	465	167627377	-	Fphi_1152	-	phosphoglycerol transferase-like protein
1153	 35.32	0	1250582..1251337	-	251	167627378	-	Fphi_1153	-	short-chain dehydrogenase/reductase SDR
1154	 33.33	0	1251342..1252553	-	403	167627379	-	Fphi_1154	-	capsule polysaccharide biosynthesis protein
1155	 40.45	+2	1252757..1254568	+	603	167627380	-	Fphi_1155	-	KpsD protein
1156	 33.05	0	1254928..1255983	+	351	167627381	-	Fphi_1156	-	hypothetical protein
1157	 36.74	+1	1256164..1257015	-	283	167627382	-	Fphi_1157	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1158	 35.48	0	1257023..1258282	-	419	167627383	-	Fphi_1158	-	capsular polysaccharide ABC transporter
1159	 36.85	+1	1258316..1258969	-	217	167627384	-	Fphi_1159	-	putative capsule polysaccharide export transport system ATP-binding protein
1160	 33.33	0	1258979..1259773	-	264	167627385	-	Fphi_1160	-	polysialic acid transport protein KpsM
1161	 40.12	+2	1260039..1261820	+	593	167627386	-	Fphi_1161	-	KpsD protein
1162	 32.75	0	1261853..1269274	+	2473	167627387	-	Fphi_1162	-	hypothetical protein
1163	 34.01	0	1269279..1270469	+	396	167627388	-	Fphi_1163	-	UDP-N-acetylglucosamine 4,6-dehydratase
1164	 33.16	0	1270456..1271613	+	385	167627389	-	Fphi_1164	-	DegT/DnrJ/EryC1/StrS aminotransferase
1165	 34.02	0	1271613..1272194	+	193	167627390	-	Fphi_1165	-	acetyl transferase
1166	 30.67	0	1272191..1272415	+	74	167627391	-	Fphi_1166	-	general stress protein 14 (GSP14)
1167	 37.08	+1	1272471..1273190	+	239	167627392	-	Fphi_1167	-	N-acylneuraminate-9-phosphate synthase
1168	 33.85	0	1273187..1274350	+	387	167627393	-	Fphi_1168	-	UDP-N-acetylglucosamine 2-epimerase
1169	 33.52	0	1274350..1275396	+	348	167627394	-	Fphi_1169	-	nucleotidyl transferase
1170	 32.32	0	1275396..1276085	+	229	167627395	-	Fphi_1170	-	acylneuraminate cytidylyltransferase
1171	 31.28	0	1276101..1277072	+	323	167627396	-	Fphi_1171	-	dehydrogenase
1172	 34.24	0	1277047..1278036	+	329	167627397	-	Fphi_1172	-	dehydrogenase
1173	 32.11	0	1278063..1280105	+	680	167627398	-	Fphi_1173	-	capsule polysaccharide export protein KpsC
1174	 28.67	-1	1280213..1281070	+	285	167627399	-	Fphi_1174	-	hypothetical protein
1175	 31.83	0	1281322..1281654	-	110	167627400	-	Fphi_1175	-	transposase
1176	 29.17	-1	1282074..1282193	-	39	167627401	-	Fphi_1929	-	hypothetical protein
1177	 31.71	0	1282265..1283065	-	266	167627402	-	Fphi_1176	-	transposase for IS1106
1178	 32.24	0	1283254..1283892	-	212	167627403	-	Fphi_1177	-	hypothetical protein
1179	 32.49	0	1283955..1284782	-	275	167627404	-	Fphi_1178	-	putative desulfatase
1180	 35.44	0	1285203..1286198	+	331	167627405	-	Fphi_1179	-	putative spore protein
1181	 34.67	0	1286205..1287179	+	324	167627406	-	Fphi_1180	-	capsule polysaccharide export protein KpsC
1182	 25.53	-2	1287468..1287608	+	46	167627407	-	Fphi_1181	-	hypothetical protein
1183	 36.58	+1	1287612..1288721	+	369	167627408	-	Fphi_1182	-	capsule polysaccharide export protein
1184	 30.26	0	1288971..1289915	+	314	167627409	-	Fphi_1184	-	integrase, catalytic region
1185	 33.82	0	1289887..1290093	-	68	167627410	-	Fphi_1183	-	hypothetical protein
1186	 37.63	+1	1290535..1293213	+	892	167627411	-	Fphi_1185	-	pyruvate dehydrogenase subunit E1
1187	 39.32	+2	1293231..1295102	+	623	167627412	-	Fphi_1186	-	dihydrolipoamide acetyltransferase
1188	 39.70	+2	1295118..1296530	+	470	167627413	-	Fphi_1187	-	pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase
1189	 35.16	0	1296626..1297282	+	218	167627414	-	Fphi_1188	-	uracil-DNA glycosylase
1190	 29.71	0	1297303..1297743	-	146	167627415	-	Fphi_1189	-	hypothetical protein
1191	 29.76	0	1297746..1298333	-	195	167627416	-	Fphi_1190	-	hypothetical protein
1192	 39.89	+2	1298368..1298550	-	60	167627417	-	Fphi_1191	-	chitin-binding protein
1193	 30.26	0	1299018..1299962	-	314	167627418	-	Fphi_1192	-	integrase, catalytic region
1194	 35.95	+1	1300030..1301214	-	394	167627419	-	Fphi_1193	-	hypothetical protein
1195	 36.65	+1	1301474..1304068	+	864	167627420	-	Fphi_1194	-	DNA topoisomerase (ATP-hydrolyzing)
1196	 33.25	0	1304074..1305228	+	384	167627421	-	Fphi_1195	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
1197	 34.43	0	1305234..1307612	+	792	167627422	-	Fphi_1196	-	outer membrane protein of unknown function
1198	 33.13	0	1307735..1308235	+	166	167627423	-	Fphi_1197	-	outer membrane protein OmpH
1199	 36.48	+1	1308256..1309272	+	338	167627424	-	Fphi_1198	-	UDP-3-O-(3-hydroxy-fatty acid)-glucosamine N-acyltransferase
1200	 35.98	+1	1309283..1309774	+	163	167627425	-	Fphi_1199	-	beta-hydroxyacyl-ACP dehydratase
1201	 37.69	+1	1309777..1310556	+	259	167627426	-	Fphi_1200	-	UDP-N-acetylglucosamine acyltransferase
1202	 32.37	0	1310556..1311698	+	380	167627427	-	Fphi_1201	-	Lipid-A-disaccharide synthase
1203	 29.57	0	1311759..1312343	+	194	167627428	-	Fphi_1202	-	hypothetical protein
1204	 34.44	0	1312659..1313468	-	269	167627429	-	Fphi_1203	-	hypothetical protein
1205	 29.25	-1	1313536..1314294	-	252	167627430	-	Fphi_1204	-	(CDP-alcohol) phosphatidyltransferase
1206	 31.75	0	1314356..1315237	-	293	167627431	-	Fphi_1205	-	geranyltranstransferase
1207	 32.10	0	1315234..1316529	-	431	167627432	-	Fphi_1206	-	3-deoxy-D-manno-octulosonic-acid transferase
1208	 33.85	0	1316639..1317217	-	192	167627433	-	Fphi_1207	-	HAM1 protein
1209	 36.01	+1	1317320..1318141	+	273	167627434	-	Fphi_1208	-	pyrroline-5-carboxylate reductase
1210	 33.04	0	1318276..1318962	+	228	167627435	-	Fphi_1209	-	response regulator receiver protein
1211	 33.80	0	1318967..1319830	+	287	167627436	-	Fphi_1210	-	Signal peptidase I
1212	 30.88	0	1319835..1320527	+	230	167627437	-	Fphi_1211	-	ribonuclease III
1213	 33.44	0	1320514..1321422	+	302	167627438	-	Fphi_1212	-	tRNA pseudouridine synthase B
1214	 33.59	0	1321415..1323715	+	766	167627439	-	Fphi_1213	-	exoribonuclease II
1215	 33.57	0	1323736..1324566	-	276	167627440	-	Fphi_1214	-	delta 9 acyl-lipid fatty acid desaturase
1216	 32.12	0	1324580..1325323	-	247	167627441	-	Fphi_1215	-	short chain dehydrogenase
1217	 34.44	0	1325326..1325868	-	180	167627442	-	Fphi_1216	-	hypothetical protein
1218	 31.60	0	1325865..1326383	-	172	167627443	-	Fphi_1217	-	hypothetical protein
1219	 34.45	0	1326376..1327539	-	387	167627444	-	Fphi_1218	-	cyclopropane-fatty-acyl-phospholipid synthase
1220	 29.50	0	1327681..1328463	-	260	167627445	-	Fphi_1219	-	hypothetical protein
1221	 33.33	0	1328457..1329710	-	417	167627446	-	Fphi_1220	-	NAD/FAD-binding protein
1222	 32.95	0	1329788..1330825	-	345	167627447	-	Fphi_1221	-	two-component regulator, sensor histidine kinase
1223	 32.90	0	1330809..1331498	-	229	167627448	-	Fphi_1222	-	response regulator receiver protein
1224	 32.22	0	1331640..1332176	+	178	167627449	-	Fphi_1223	-	hypothetical protein
1225	 31.84	0	1332307..1332708	+	133	167627450	-	Fphi_1224	-	hypothetical protein
1226	 27.31	-1	1332724..1333371	+	215	167627451	-	Fphi_1225	-	SAM-dependent methyltransferase
1227	 33.17	0	1333455..1334060	+	201	167627452	-	Fphi_1226	-	hypothetical protein
1228	 34.39	0	1334127..1335551	+	474	167627453	-	Fphi_1227	-	hypothetical protein
1229	 33.33	0	1335558..1336553	+	331	167627454	-	Fphi_1228	-	hypothetical protein
1230	 32.30	0	1336501..1337946	+	481	167627455	-	Fphi_1229	-	hypothetical protein
1231	 34.61	0	1338148..1339164	+	338	167627456	-	Fphi_1230	-	ornithine cyclodeaminase
1232	 34.25	0	1339180..1340049	+	289	167627457	-	Fphi_1231	-	hypothetical protein
1233	 34.82	0	1340107..1341519	+	470	167627458	-	Fphi_1232	-	putative nicotinate phosphoribosyltransferase
1234	 26.75	-1	1341602..1341829	+	75	167627459	-	Fphi_1233	-	hypothetical protein
1235	 32.55	0	1341984..1343264	+	426	167627460	-	Fphi_1235	-	sugar porter (SP) family protein
1236	 33.54	0	1343257..1343745	-	162	167627461	-	Fphi_1234	-	hypothetical protein
1237	 38.38	+1	1343806..1344993	-	395	167627462	-	Fphi_1236	-	acetyl-CoA acetyltransferase
1238	 35.56	0	1345006..1347699	-	897	167627463	-	Fphi_1237	-	bifunctional protein: 3-hydroxacyl-CoA dehydrogenase/acyl-CoA-binding protein
1239	 36.46	+1	1347772..1350012	-	746	167627464	-	Fphi_1238	-	acyl-CoA dehydrogenase
1240	 32.86	0	1350043..1351737	-	564	167627465	-	Fphi_1239	-	long chain fatty acid CoA ligase
1241	 31.90	0	1351954..1352301	+	115	167627466	-	Fphi_1240	-	arsenate reductase
1242	 35.63	0	1352352..1354568	+	738	167627467	-	Fphi_1241	-	isocitrate dehydrogenase (NADP(+))
1243	 33.46	0	1354822..1358622	+	1266	167627468	-	Fphi_1242	-	HrpA-like helicase
1244	 33.79	0	1358654..1360414	+	586	167627469	-	Fphi_1243	-	dTDP-glucose 4,6-dehydratase
1245	 34.79	0	1360421..1361038	+	205	167627470	-	Fphi_1244	-	galactosyl transferase
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.