IslandPathversion 1.0

IslandPath Analysis: Francisella philomiragia subsp. philomiragia ATCC 25017



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
No RNA data available A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 32.71 STD DEV: 3.22
Francisella philomiragia subsp. philomiragia ATCC 25017, complete genome - 1..2045775
1911 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1089	 35.36	0	1179322..1180503	+	393	167627314	-	Fphi_1090	-	3-oxoacyl-(acyl carrier protein) synthase
1090	 36.75	+1	1180504..1180971	+	155	167627315	-	Fphi_1091	-	putative beta-hydroxydecanoyl-ACP dehydrase
1091	 36.64	+1	1180975..1181700	+	241	167627316	-	Fphi_1092	-	3-oxoacyl-(acyl-carrier-protein) reductase, putative
1092	 38.51	+1	1181700..1182917	+	405	167627317	-	Fphi_1093	-	beta-ketoacyl-ACP synthase
1093	 32.65	0	1182994..1183431	+	145	167627318	-	Fphi_1094	-	excinuclease ATPase subunit
1094	 33.58	0	1183439..1184674	-	411	167627319	-	Fphi_1095	-	putative enzyme
1095	 33.38	0	1184794..1187031	-	745	167627320	-	Fphi_1096	-	ferrous iron transport protein B
1096	 30.58	0	1187028..1187354	-	108	167627321	-	Fphi_1928	-	hypothetical protein
1097	 30.48	0	1187495..1187914	-	139	167627322	-	Fphi_1097	-	hypothetical protein
1098	 38.54	+1	1188130..1188417	+	95	167627323	-	Fphi_1098	-	co-chaperonin GroES
1099	 38.42	+1	1188455..1190086	+	543	167627324	-	Fphi_1099	-	chaperonin GroEL
1100	 35.26	0	1190278..1191627	+	449	167627325	-	Fphi_1100	-	amino acid-polyamine-organocation (APC) superfamily protein
1101	 34.55	0	1191631..1192452	-	273	167627326	-	Fphi_1101	-	short chain dehydrogenase/reductase family oxidoreductase
1102	 36.38	+1	1192648..1194159	+	503	167627327	-	Fphi_1102	-	serine protease
1103	 26.26	-2	1194183..1194380	-	65	167627328	-	Fphi_1103	-	hypothetical protein
1104	 30.25	0	1194394..1194879	-	161	167627329	-	Fphi_1104	-	hypothetical protein
1105	 35.02	0	1194934..1196118	-	394	167627330	-	Fphi_1105	-	hypothetical protein
1106	 33.25	0	1196124..1197269	-	381	167627331	-	Fphi_1106	-	Bcr/CflA subfamily drug resistance transporter
1107	 37.63	+1	1197419..1198768	-	449	167627332	-	Fphi_1107	-	glutamate dehydrogenase
1108	 32.02	0	1199265..1199948	+	227	167627333	-	Fphi_1108	-	hypothetical protein
1109	 32.57	0	1199963..1201147	+	394	167627334	-	Fphi_1109	-	diaminopimelate decarboxylase
1110	 33.69	0	1201162..1202565	+	467	167627335	-	Fphi_1110	-	APC family gamma-glutamate:GABA antiporter
1111	 29.01	-1	1202599..1203153	-	184	167627336	-	Fphi_1111	-	methylated-DNA--(protein)-cysteine S-methyltransferase
1112	 33.48	0	1203197..1203889	+	230	167627337	-	Fphi_1112	-	hypothetical protein
1113	 35.53	0	1203892..1205304	+	470	167627338	-	Fphi_1113	-	dihydrolipoamide dehydrogenase
1114	 29.98	0	1205301..1205897	+	198	167627339	-	Fphi_1114	-	CDP-alcohol phosphatidyltransferase family protein
1115	 31.01	0	1205897..1206283	+	128	167627340	-	Fphi_1115	-	hypothetical protein
1116	 33.08	0	1206300..1206692	+	130	167627341	-	Fphi_1116	-	hypothetical protein
1117	 38.62	+1	1206851..1207777	+	308	167627342	-	Fphi_1117	-	chaperone protein DNA J
1118	 32.38	0	1208349..1208870	+	173	167627343	-	Fphi_1118	-	hypothetical protein
1119	 26.92	-1	1208870..1210054	+	394	167627344	-	Fphi_1119	-	hypothetical protein
1120	 30.26	0	1210168..1211112	+	314	167627345	-	Fphi_1120	-	integrase, catalytic region
1121	 36.67	+1	1211181..1211360	+	59	167627346	-	Fphi_1122	-	hypothetical protein
1122	 33.45	0	1211357..1212235	-	292	167627347	-	Fphi_1121	-	10 TMS drug/metabolite exporter protein
1123	 32.50	0	1212421..1213617	+	398	167627348	-	Fphi_1123	-	hydroxy/aromatic amino acid permease (HAAAP) family protein
1124	 26.61	-1	1213649..1214005	+	118	167627349	-	Fphi_1124	-	hypothetical protein
1125	 33.75	0	1214380..1216308	+	642	167627350	-	Fphi_1125	-	GTP diphosphokinase
1126	 33.96	0	1216326..1216967	-	213	167627351	-	Fphi_1126	-	thymosin beta-4 family protein
1127	 32.65	0	1217045..1217626	-	193	167627352	-	Fphi_1127	-	hypothetical protein
1128	 31.06	0	1217708..1218322	+	204	167627353	-	Fphi_1128	-	hypothetical protein
1129	 29.60	0	1218328..1219050	-	240	167627354	-	Fphi_1129	-	hypothetical protein
1130	 29.82	0	1219047..1219928	-	293	167627355	-	Fphi_1130	-	phage integrase family protein
1131	 32.87	0	1219937..1221220	-	427	167627356	-	Fphi_1131	-	aromatic amino acid HAAP transporter
1132	 31.11	0	1221168..1221617	-	149	167627357	-	Fphi_1132	-	preprotein translocase subunit SecB
1133	 32.98	0	1221684..1224230	-	848	167627358	-	Fphi_1133	-	DNA mismatch repair protein
1134	 38.08	+1	1224401..1225348	+	315	167627359	-	Fphi_1134	-	tRNA adenylyltransferase
1135	 30.75	0	1225379..1225882	+	167	167627360	-	Fphi_1135	-	pilus assembly protein
1136	 32.54	0	1225863..1226876	+	337	167627361	-	Fphi_1136	-	pilus assembly protein
1137	 31.07	0	1226885..1228828	+	647	167627362	-	Fphi_1137	-	hypothetical protein
1138	 34.80	0	1228825..1229709	+	294	167627363	-	Fphi_1138	-	N-acetylmuramic acid-6-phosphate etherase
1139	 33.83	0	1229711..1230112	+	133	167627364	-	Fphi_1139	-	hypothetical protein
1140	 34.71	0	1230327..1231631	-	434	167627365	-	Fphi_1140	-	monovalent cation:proton antiporter-1
1141	 31.82	0	1231641..1232369	-	242	167627366	-	Fphi_1141	-	hypothetical protein
1142	 34.03	0	1232371..1233375	-	334	167627367	-	Fphi_1142	-	tryptophanyl-tRNA synthetase
1143	 34.06	0	1233604..1234977	-	457	167627368	-	Fphi_1143	-	hypothetical protein
1144	 30.89	0	1235422..1236036	-	204	167627369	-	Fphi_1144	-	dephospho-CoA kinase
1145	 32.89	0	1236170..1237306	+	378	167627370	-	Fphi_1145	-	hypothetical protein
1146	 34.28	0	1237389..1244282	+	2297	167627371	-	Fphi_1146	-	polyketide synthase modules
1147	 34.73	0	1244282..1245571	+	429	167627372	-	Fphi_1147	-	8-amino-7-oxononanoate synthase
1148	 31.22	0	1245579..1246193	+	204	167627373	-	Fphi_1148	-	hypothetical protein
1149	 29.86	0	1246242..1246529	+	95	167627374	-	Fphi_1149	-	oligoketide cyclase/lipid transport protein
1150	 31.37	0	1246694..1248067	-	457	167627375	-	Fphi_1150	-	putative cytochrome P450
1151	 26.97	-1	1248071..1249138	-	355	167627376	-	Fphi_1151	-	hypothetical protein
1152	 30.62	0	1249183..1250580	-	465	167627377	-	Fphi_1152	-	phosphoglycerol transferase-like protein
1153	 35.32	0	1250582..1251337	-	251	167627378	-	Fphi_1153	-	short-chain dehydrogenase/reductase SDR
1154	 33.33	0	1251342..1252553	-	403	167627379	-	Fphi_1154	-	capsule polysaccharide biosynthesis protein
1155	 40.45	+2	1252757..1254568	+	603	167627380	-	Fphi_1155	-	KpsD protein
1156	 33.05	0	1254928..1255983	+	351	167627381	-	Fphi_1156	-	hypothetical protein
1157	 36.74	+1	1256164..1257015	-	283	167627382	-	Fphi_1157	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
1158	 35.48	0	1257023..1258282	-	419	167627383	-	Fphi_1158	-	capsular polysaccharide ABC transporter
1159	 36.85	+1	1258316..1258969	-	217	167627384	-	Fphi_1159	-	putative capsule polysaccharide export transport system ATP-binding protein
1160	 33.33	0	1258979..1259773	-	264	167627385	-	Fphi_1160	-	polysialic acid transport protein KpsM
1161	 40.12	+2	1260039..1261820	+	593	167627386	-	Fphi_1161	-	KpsD protein
1162	 32.75	0	1261853..1269274	+	2473	167627387	-	Fphi_1162	-	hypothetical protein
1163	 34.01	0	1269279..1270469	+	396	167627388	-	Fphi_1163	-	UDP-N-acetylglucosamine 4,6-dehydratase
1164	 33.16	0	1270456..1271613	+	385	167627389	-	Fphi_1164	-	DegT/DnrJ/EryC1/StrS aminotransferase
1165	 34.02	0	1271613..1272194	+	193	167627390	-	Fphi_1165	-	acetyl transferase
1166	 30.67	0	1272191..1272415	+	74	167627391	-	Fphi_1166	-	general stress protein 14 (GSP14)
1167	 37.08	+1	1272471..1273190	+	239	167627392	-	Fphi_1167	-	N-acylneuraminate-9-phosphate synthase
1168	 33.85	0	1273187..1274350	+	387	167627393	-	Fphi_1168	-	UDP-N-acetylglucosamine 2-epimerase
1169	 33.52	0	1274350..1275396	+	348	167627394	-	Fphi_1169	-	nucleotidyl transferase
1170	 32.32	0	1275396..1276085	+	229	167627395	-	Fphi_1170	-	acylneuraminate cytidylyltransferase
1171	 31.28	0	1276101..1277072	+	323	167627396	-	Fphi_1171	-	dehydrogenase
1172	 34.24	0	1277047..1278036	+	329	167627397	-	Fphi_1172	-	dehydrogenase
1173	 32.11	0	1278063..1280105	+	680	167627398	-	Fphi_1173	-	capsule polysaccharide export protein KpsC
1174	 28.67	-1	1280213..1281070	+	285	167627399	-	Fphi_1174	-	hypothetical protein
1175	 31.83	0	1281322..1281654	-	110	167627400	-	Fphi_1175	-	transposase
1176	 29.17	-1	1282074..1282193	-	39	167627401	-	Fphi_1929	-	hypothetical protein
1177	 31.71	0	1282265..1283065	-	266	167627402	-	Fphi_1176	-	transposase for IS1106
1178	 32.24	0	1283254..1283892	-	212	167627403	-	Fphi_1177	-	hypothetical protein
1179	 32.49	0	1283955..1284782	-	275	167627404	-	Fphi_1178	-	putative desulfatase
1180	 35.44	0	1285203..1286198	+	331	167627405	-	Fphi_1179	-	putative spore protein
1181	 34.67	0	1286205..1287179	+	324	167627406	-	Fphi_1180	-	capsule polysaccharide export protein KpsC
1182	 25.53	-2	1287468..1287608	+	46	167627407	-	Fphi_1181	-	hypothetical protein
1183	 36.58	+1	1287612..1288721	+	369	167627408	-	Fphi_1182	-	capsule polysaccharide export protein
1184	 30.26	0	1288971..1289915	+	314	167627409	-	Fphi_1184	-	integrase, catalytic region
1185	 33.82	0	1289887..1290093	-	68	167627410	-	Fphi_1183	-	hypothetical protein
1186	 37.63	+1	1290535..1293213	+	892	167627411	-	Fphi_1185	-	pyruvate dehydrogenase subunit E1
1187	 39.32	+2	1293231..1295102	+	623	167627412	-	Fphi_1186	-	dihydrolipoamide acetyltransferase
1188	 39.70	+2	1295118..1296530	+	470	167627413	-	Fphi_1187	-	pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase
32.71	MEAN

3.22	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.