IslandPathversion 1.0

IslandPath Analysis: Escherichia coli SMS-3-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.50 STD DEV: 5.49
Escherichia coli SMS-3-5, complete genome - 1..5068389
4743 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
373	 53.78	0	402177..403286	-	369	170682377	adhC	EcSMS35_0387	-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
374	 53.26	0	403321..403596	-	91	170680784	-	EcSMS35_0388	-	hypothetical protein
375	 50.13	0	403781..404554	-	257	170681412	-	EcSMS35_0389	-	hypothetical protein
376	 45.80	0	404556..404996	-	146	170679736	-	EcSMS35_0390	-	putative acyltransferase
377	 50.04	0	405115..406311	-	398	170680221	-	EcSMS35_0391	-	glycosyl transferase, group 2 family protein
378	 43.90	-1	406321..406992	-	223	170680287	-	EcSMS35_0392	-	putative GlcNAc-PI de-N-acetylase
379	 32.78	-2	407430..407609	-	59	170680834	-	EcSMS35_0393	-	hypothetical protein
380	 56.28	+1	407608..408570	+	320	170684058	tauA	EcSMS35_0394	-	taurine ABC transporter, periplasmic taurine-binding protein
381	 56.38	+1	408584..409351	+	255	170679852	tauB	EcSMS35_0395	-	taurine ABC transporter, ATP-binding protein
382	 57.97	+1	409348..410175	+	275	170683056	tauC	EcSMS35_0396	-	taurine uptake ABC transporter, permease protein
383	 54.93	0	410172..411023	+	283	170683535	tauD	EcSMS35_0397	-	taurine dioxygenase
384	 53.74	0	411063..412037	-	324	170680798	hemB	EcSMS35_0398	-	delta-aminolevulinic acid dehydratase
385	 42.31	-1	412563..413420	+	285	170682512	-	EcSMS35_0400	-	hypothetical protein
386	 54.97	0	413260..414165	-	301	170682518	-	EcSMS35_0399	-	IS2 transposase orfB
387	 50.61	0	414123..414533	-	136	170682327	-	EcSMS35_0401	-	IS2 transposase orfA
388	 46.90	0	414664..416808	+	714	170683055	-	EcSMS35_0402	-	outer membrane autotransporter
389	 39.42	-2	416894..417517	+	207	170679630	-	EcSMS35_0403	-	hypothetical protein
390	 55.18	0	417518..418675	-	385	170680606	ampH	EcSMS35_0404	-	penicillin-binding protein AmpH
391	 45.13	0	418813..419007	+	64	170681123	-	EcSMS35_0405	-	hypothetical protein
392	 51.27	0	419027..420247	+	406	170681620	smbA	EcSMS35_0406	-	protein SbmA
393	 53.88	0	420260..421354	+	364	170682252	-	EcSMS35_0407	-	putative lipoprotein
394	 51.78	0	421412..421720	-	102	170682962	-	EcSMS35_0408	-	hypothetical protein
395	 48.36	0	421980..422192	+	70	170683615	-	EcSMS35_0409	-	hypothetical protein
396	 51.78	0	422216..423310	-	364	170684315	ddlA	EcSMS35_0410	-	D-alanine--D-alanine ligase A
397	 34.80	-2	423388..423591	+	67	170679659	-	EcSMS35_0411	-	hypothetical protein
398	 45.21	0	423773..424033	+	86	170680271	-	EcSMS35_0412	-	hypothetical protein
399	 53.81	0	424133..425548	+	471	170680523	phoA	EcSMS35_0413	-	alkaline phosphatase
400	 48.29	0	425667..425987	+	106	170680000	psiF	EcSMS35_0414	-	phosphate starvation-inducible protein PsiF
401	 53.85	0	426089..427204	+	371	170683904	-	EcSMS35_0415	-	MASE2 domain/diguanylate cyclase
402	 54.57	0	427221..428030	-	269	170683285	proC	EcSMS35_0416	-	pyrroline-5-carboxylate reductase
403	 56.43	+1	428150..428608	+	152	170682072	-	EcSMS35_0417	-	hypothetical protein
404	 52.76	0	428791..429315	+	174	170683799	aroL	EcSMS35_0418	-	shikimate kinase
405	 48.44	0	429365..429556	+	63	170681907	-	EcSMS35_0419	-	hypothetical protein
406	 46.17	0	429814..430491	+	225	170681240	aroM	EcSMS35_0420	-	AroM protein
407	 51.58	0	430563..430847	+	94	170683956	-	EcSMS35_0421	-	hypothetical protein
408	 49.10	0	431055..431333	+	92	170680752	-	EcSMS35_0422	-	hypothetical protein
409	 51.43	0	431491..432402	-	303	170681396	rdgC	EcSMS35_0423	-	recombination-associated exonuclease RdgC
410	 55.89	0	432527..433435	+	302	170682440	mak	EcSMS35_0424	-	manno(fructo)kinase
411	 50.83	0	433575..434843	-	422	170683106	araJ	EcSMS35_0425	-	protein araJ
412	 54.36	0	434885..438028	-	1047	170682477	sbcC	EcSMS35_0426	-	nuclease SbcCD, C subunit
413	 52.78	0	438025..439227	-	400	170683006	sbcD	EcSMS35_0427	-	nuclease SbcCD, D subunit
414	 46.21	0	439213..439344	+	43	170683648	-	EcSMS35_0428	-	hypothetical protein
415	 54.49	0	439417..440106	+	229	170684203	phoB	EcSMS35_0429	-	phosphate regulon transcriptional regulatory protein PhoB
416	 52.55	0	440164..441459	+	431	170681341	phoR	EcSMS35_0430	-	phosphate regulon sensor protein PhoR
417	 44.00	-1	441672..441821	-	49	170680082	-	EcSMS35_0431	-	hypothetical protein
418	 55.76	0	441866..443185	+	439	170680091	brnQ	EcSMS35_0432	-	branched-chain amino acid transport system II carrier protein
419	 52.51	0	443258..444634	+	458	170680647	proY	EcSMS35_0433	-	proline-specific permease ProY
420	 55.12	0	444790..446607	+	605	170681194	malZ	EcSMS35_0434	-	maltodextrin glucosidase
421	 36.45	-2	446794..448239	+	481	170681654	-	EcSMS35_0435	-	hypothetical protein
422	 53.61	0	448260..448841	-	193	170684080	acpH	EcSMS35_0436	-	[acyl-carrier-protein] phosphodiesterase
423	 54.06	0	448934..450004	+	356	170682221	queA	EcSMS35_0437	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
424	 51.15	0	450059..451186	+	375	170680278	tgt	EcSMS35_0438	-	queuine tRNA-ribosyltransferase
425	 49.55	0	451209..451541	+	110	170683289	yajC	EcSMS35_0439	-	preprotein translocase, YajC subunit
426	 53.84	0	451569..453416	+	615	170680742	secD	EcSMS35_0440	-	protein-export membrane protein SecD
427	 52.26	0	453427..454398	+	323	170684249	secF	EcSMS35_0441	-	protein-export membrane protein SecF
428	 44.44	-1	454549..454791	+	80	170679872	-	EcSMS35_0442	-	CC2985 family addiction module antidote protein
429	 45.74	0	454784..455065	+	93	170682953	-	EcSMS35_0443	-	RelE/ParE family plasmid stabilization system protein
430	 46.84	0	455153..455500	+	115	170683294	-	EcSMS35_0444	-	HNH endonuclease family protein
431	 50.17	0	455538..456422	-	294	170680575	tsx1	EcSMS35_0445	-	nucleoside-specific channel-forming protein Tsx
432	 52.03	0	457626..458834	+	402	170682659	-	EcSMS35_0448	-	IS605 family transposase orfB
433	 51.11	0	459158..459607	+	149	170680845	nrdR	EcSMS35_0449	-	NrdR family transcriptional regulator
434	 54.89	0	459611..460714	+	367	170680144	ribD	EcSMS35_0450	-	riboflavin biosynthesis protein RibD
435	 51.80	0	460803..461273	+	156	170680589	ribH	EcSMS35_0451	-	6,7-dimethyl-8-ribityllumazine synthase
436	 54.52	0	461293..461712	+	139	170681155	nusB	EcSMS35_0452	-	transcription termination/antitermination factor NusB
437	 55.01	0	461790..462767	+	325	170681628	thiL	EcSMS35_0453	-	thiamine-monophosphate kinase
438	 52.75	0	462754..463263	+	169	170682164	pgpA	EcSMS35_0454	-	phosphatidylglycerophosphatase A
439	 53.44	0	463317..464291	-	324	170682731	-	EcSMS35_0455	-	aldo/keto reductase family oxidoreductase
440	 54.00	0	464346..466208	-	620	170680644	dxs	EcSMS35_0456	-	1-deoxy-D-xylulose-5-phosphate synthase
441	 53.89	0	466233..467132	-	299	170683582	ispA	EcSMS35_0457	-	geranyltranstransferase
442	 55.14	0	467132..467374	-	80	170681913	xseB	EcSMS35_0458	-	exodeoxyribonuclease VII, small subunit
443	 51.76	0	467580..469028	+	482	170679960	thiI	EcSMS35_0459	-	thiamine biosynthesis/tRNA modification protein ThiI
444	 56.18	+1	469082..469672	-	196	170681670	thiJ	EcSMS35_0460	-	protein ThiJ
445	 51.54	0	469635..470546	-	303	170681172	panE	EcSMS35_0461	-	2-dehydropantoate 2-reductase
446	 48.98	0	470714..471205	+	163	170680710	-	EcSMS35_0462	-	hypothetical protein
447	 52.89	0	471333..472697	-	454	170679618	-	EcSMS35_0463	-	major facilitator transporter
448	 25.00	-2	472840..472995	+	51	170681703	-	EcSMS35_0464	-	hypothetical protein
449	 44.55	-1	473104..474039	+	311	170681040	-	EcSMS35_0465	-	hypothetical protein
450	 43.65	-1	474095..474637	-	180	170680596	-	EcSMS35_0466	-	acetyltransferase
451	 49.68	0	474621..474932	-	103	170680065	-	EcSMS35_0467	-	hypothetical protein
452	 53.98	0	475117..476007	-	296	170682454	cyoE	EcSMS35_0468	-	protoheme IX farnesyltransferase
453	 49.70	0	476019..476348	-	109	170683697	cyoD	EcSMS35_0469	-	cytochrome o ubiquinol oxidase, subunit IV
454	 53.50	0	476348..476962	-	204	170680623	cyoC	EcSMS35_0470	-	cytochrome o ubiquinol oxidase, subunit III
455	 53.16	0	476952..478943	-	663	170683544	cyoB	EcSMS35_0471	-	cytochrome o ubiquinol oxidase, subunit I
456	 50.63	0	478965..479912	-	315	170683800	cyoA	EcSMS35_0472	-	cytochrome o ubiquinol oxidase, subunit II
457	 34.03	-2	480214..480357	+	47	170681938	-	EcSMS35_0473	-	hypothetical protein
458	 53.66	0	480372..481847	-	491	170682808	-	EcSMS35_0474	-	permease
459	 50.78	0	481891..482469	-	192	170681187	-	EcSMS35_0475	-	putative lipoprotein
460	 42.42	-1	482519..482650	-	43	170680924	-	EcSMS35_0476	-	hypothetical protein
461	 48.43	0	482774..483091	+	105	170681580	-	EcSMS35_0477	-	protein BolA
462	 46.26	0	483142..483288	+	48	170682286	-	EcSMS35_0478	-	hypothetical protein
463	 50.96	0	483435..484733	+	432	170682129	tig	EcSMS35_0479	-	trigger factor
464	 50.64	0	484979..485602	+	207	170683276	clpP	EcSMS35_0480	-	ATP-dependent Clp protease, proteolytic subunit ClpP
465	 51.69	0	485728..487002	+	424	170682782	clpX	EcSMS35_0481	-	ATP-dependent Clp protease, ATP-binding subunit ClpX
466	 52.19	0	487190..489544	+	784	170682239	lon	EcSMS35_0482	-	ATP-dependent protease La
467	 49.45	0	489753..490025	+	90	170681712	hupB	EcSMS35_0483	-	DNA-binding protein HU-beta
468	 51.92	0	490217..492088	+	623	170681699	ppiD	EcSMS35_0484	-	peptidylprolyl isomerase
469	 54.84	0	492239..492610	+	123	170681053	-	EcSMS35_0485	-	competence protein ComEA
470	 45.86	0	492716..493114	+	132	170679664	-	EcSMS35_0486	-	thioesterase family protein
471	 51.29	0	493166..493861	-	231	170680140	queC	EcSMS35_0487	-	queuosine biosynthesis protein QueC
472	 53.38	0	493926..495626	-	566	170683749	-	EcSMS35_0488	-	solute-binding family 5 protein
50.50	MEAN

5.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.