version 1.0
Escherichia coli SMS-3-5, complete genome - 1..5068389 4743 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3960 51.63 0 4211115..4212983 + 622 170682987 kup EcSMS35_4115 - potassium uptake protein 3961 46.53 0 4213138..4213569 + 143 170683192 rbsD EcSMS35_4116 - cytoplasmic D-ribose-binding protein RbsD 3962 51.26 0 4213577..4215082 + 501 170682444 rbsA EcSMS35_4117 - ribose ABC transporter, ATP-binding protein 3963 53.21 0 4215087..4216052 + 321 170683105 rbsC EcSMS35_4118 - ribose ABC transporter, permease protein 3964 52.97 0 4216077..4216967 + 296 170681554 rbsB EcSMS35_4119 - ribose ABC transporter, periplasmic ribose-binding protein 3965 52.17 0 4217078..4218022 + 314 170681947 rbsK EcSMS35_4120 - ribokinase 3966 50.45 0 4218026..4219018 + 330 170680451 rbsR EcSMS35_4122 - ribose operon repressor 3967 49.44 0 4218984..4220411 - 475 170679741 - EcSMS35_4121 - DHA2 family drug:H+ antiporter-1 3968 49.21 0 4220434..4221126 - 230 170681987 - EcSMS35_4123 - GntR family transcriptional regulator 3969 48.21 0 4226916..4227755 - 279 170682999 hdfR EcSMS35_4131 - transcriptional regulator HdfR 3970 48.67 0 4227874..4228212 + 112 170682455 - EcSMS35_4132 - hypothetical protein 3971 51.08 0 4228237..4229757 - 506 170680083 - EcSMS35_4133 - AAA family ATPase 3972 54.10 0 4230348..4231994 + 548 170684034 ilvG EcSMS35_4134 - acetolactate synthase, large subunit, isozyme II 3973 49.62 0 4231991..4232254 + 87 170681121 ilvM EcSMS35_4135 - acetolactate synthase, isozyme II, small subunit 3974 55.05 0 4232274..4233203 + 309 170680330 ilvE EcSMS35_4136 - branched-chain-amino-acid transaminase 3975 56.35 +1 4233268..4235118 + 616 170682714 ilvD EcSMS35_4137 - dihydroxy-acid dehydratase 3976 58.07 +1 4235118..4236665 + 515 170680546 ilvA EcSMS35_4139 - threonine ammonia-lyase, biosynthetic 3977 57.13 +1 4236662..4237552 - 296 170682183 ilvY EcSMS35_4138 - transcriptional regulator IlvY 3978 53.73 0 4237702..4239177 + 491 170683905 ilvC EcSMS35_4140 - ketol-acid reductoisomerase 3979 50.00 0 4239223..4239504 - 93 170682547 ppiC EcSMS35_4141 - peptidyl-prolyl cis-trans isomerase C 3980 54.01 0 4240324..4242345 + 673 170680827 rep EcSMS35_4142 - ATP-dependent DNA helicase Rep 3981 53.40 0 4242392..4243876 - 494 170681890 gppA EcSMS35_4143 - guanosine-5'-triphosphate,3'-diphosphate diphosphatase 3982 52.37 0 4244012..4245277 - 421 170679910 rhlB EcSMS35_4144 - ATP-dependent RNA helicase RhlB 3983 50.91 0 4245408..4245737 + 109 170680473 trx EcSMS35_4145 - thioredoxin 3984 50.63 0 4246064..4247323 + 419 170683673 rho EcSMS35_4146 - transcription termination factor Rho 3985 41.55 -1 4247333..4247551 + 72 170684201 - EcSMS35_4147 - hypothetical protein 3986 48.82 0 4247563..4248666 + 367 170682041 wecA EcSMS35_4148 - undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 3987 52.53 0 4248678..4249724 + 348 170682919 - EcSMS35_4149 - lipopolysaccharide biosynthesis protein WzzE 3988 52.87 0 4249780..4250910 + 376 170682256 - EcSMS35_4150 - UDP-N-acetylglucosamine 2-epimerase 3989 53.68 0 4250907..4252169 + 420 170684251 wecC EcSMS35_4151 - UDP-N-acetyl-D-mannosamine dehydrogenase 3990 53.65 0 4252169..4253236 + 355 170683610 rfbB2 EcSMS35_4152 - dTDP-glucose 4,6-dehydratase 3991 54.88 0 4253255..4254136 + 293 170680051 rfbA EcSMS35_4153 - glucose-1-phosphate thymidylyltransferase 3992 55.11 0 4254114..4254788 + 224 170681802 wecD EcSMS35_4154 - TDP-D-fucosamine acetyltransferase 3993 54.64 0 4254793..4255923 + 376 170681601 wecE EcSMS35_4155 - TDP-4-keto-6-deoxy-D-glucose transaminase 3994 53.24 0 4255925..4257175 + 416 170680789 - EcSMS35_4156 - polysaccharide biosynthesis protein 3995 52.50 0 4257172..4258251 + 359 170682089 wecF EcSMS35_4157 - TDP-Fuc4NAc:lipid II Fuc4Nac transferase 3996 52.18 0 4258248..4259600 + 450 170683948 wzyE EcSMS35_4158 - ECA biosynthesis protein WzyE 3997 53.98 0 4259603..4260343 + 246 170683664 - EcSMS35_4159 - WecB/TagA/CpsF family glycosyl transferase 3998 53.25 0 4260534..4261919 + 461 170680511 - EcSMS35_4160 - amino acid permease family protein 3999 50.32 0 4262605..4263840 + 411 170681829 aslB EcSMS35_4165 - arylsulfatase-activating protein AslB 4000 53.32 0 4263998..4265653 - 551 170681296 aslA EcSMS35_4166 - arylsulfatase 4001 55.56 0 4266317..4267513 - 398 170682558 hemY EcSMS35_4167 - HemY protein 4002 53.52 0 4267516..4268709 - 397 170682020 - EcSMS35_4168 - putative uroporphyrin-III C-methyltransferase 4003 53.17 0 4268731..4269471 - 246 170683392 hemD EcSMS35_4169 - uroporphyrinogen-III synthase 4004 56.32 +1 4269468..4270424 - 318 170680193 hemC EcSMS35_4170 - porphobilinogen deaminase 4005 52.22 0 4270796..4273342 + 848 170679613 cyaA EcSMS35_4171 - adenylate cyclase, class I 4006 52.34 0 4273382..4273702 - 106 170681576 cyaY EcSMS35_4172 - iron donor protein CyaY 4007 48.11 0 4273750..4274013 - 87 170682654 - EcSMS35_4173 - putative lipoprotein 4008 52.45 0 4274172..4274375 + 67 170681974 - EcSMS35_4174 - putative lipoprotein 4009 55.15 0 4274412..4275236 + 274 170683935 dapF EcSMS35_4175 - diaminopimelate epimerase 4010 55.79 0 4275233..4275940 + 235 170683253 - EcSMS35_4176 - hypothetical protein 4011 54.85 0 4275937..4276833 + 298 170683603 xerC EcSMS35_4177 - tyrosine recombinase XerC 4012 56.21 +1 4276833..4277549 + 238 170680482 - EcSMS35_4178 - HAD-superfamily hydrolase 4013 57.51 +1 4277633..4279795 + 720 170679582 uvrD EcSMS35_4179 - DNA helicase II 4014 47.40 0 4279850..4280752 - 300 170681390 - EcSMS35_4180 - hypothetical protein 4015 46.93 0 4280835..4281599 - 254 170680837 - EcSMS35_4181 - hypothetical protein 4016 42.98 -1 4281612..4281725 + 37 170682665 - EcSMS35_4182 - hypothetical protein 4017 53.00 0 4281969..4282919 + 316 170680198 corA EcSMS35_4183 - magnesium and cobalt transport protein CorA 4018 34.14 -2 4282955..4283452 - 165 170679716 - EcSMS35_4184 - hypothetical protein 4019 32.86 -2 4283449..4284297 - 282 170684029 - EcSMS35_4185 - hypothetical protein 4020 50.62 0 4284607..4285497 - 296 170683494 rarD EcSMS35_4186 - RarD protein 4021 53.21 0 4285549..4286016 - 155 170679742 - EcSMS35_4187 - thioesterase family protein 4022 51.03 0 4286181..4287050 + 289 170681373 pldA EcSMS35_4188 - phospholipase A1 4023 55.01 0 4287169..4289004 + 611 170680861 recQ EcSMS35_4189 - ATP-dependent DNA helicase RecQ 4024 52.17 0 4289068..4289688 + 206 170683014 rhtC EcSMS35_4190 - threonine efflux protein 4025 52.01 0 4289750..4290370 - 206 170682422 rhtB EcSMS35_4191 - homoserine/homoserine lactone efflux protein 4026 53.18 0 4290481..4291503 + 340 170684143 pldB EcSMS35_4192 - lysophospholipase L2 4027 51.44 0 4291511..4292311 + 266 170683030 - EcSMS35_4193 - Cof family hydrolase 4028 55.00 0 4292387..4293286 + 299 170682387 - EcSMS35_4194 - 10 TMS drug/metabolite exporter (DME) family protein 4029 55.00 0 4294245..4296506 + 753 170683914 metE EcSMS35_4195 - 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase 4030 46.71 0 4296600..4297496 - 298 170683410 - EcSMS35_4196 - LysR family transcriptional regulator 4031 51.47 0 4297574..4298797 - 407 170680197 - EcSMS35_4197 - cytosine/purines/uracil/thiamine/allantoin family permease 4032 50.77 0 4298823..4299212 - 129 170679844 - EcSMS35_4198 - hypothetical protein 4033 54.65 0 4299229..4300185 - 318 170681211 - EcSMS35_4199 - putative carbamate kinase 4034 54.25 0 4300178..4301602 - 474 170680799 - EcSMS35_4200 - hypothetical protein 4035 52.05 0 4301599..4303158 - 519 170682351 - EcSMS35_4201 - acyl-CoA synthetase 4036 49.94 0 4303253..4304113 - 286 170684276 - EcSMS35_4202 - hypothetical protein 4037 50.37 0 4304119..4304787 - 222 170680920 - EcSMS35_4203 - isochorismatase family protein 4038 42.11 -1 4304805..4304918 + 37 170681555 - EcSMS35_4204 - hypothetical protein 4039 37.61 -2 4304897..4305013 + 38 170679678 - EcSMS35_4205 - hypothetical protein 4040 53.46 0 4305044..4305853 - 269 170680205 - EcSMS35_4206 - dienelactone hydrolase family protein 4041 38.46 -2 4305985..4306101 - 38 170683138 - EcSMS35_4207 - hypothetical protein 4042 53.99 0 4306115..4306879 + 254 170683788 udp EcSMS35_4208 - uridine phosphorylase 4043 50.70 0 4306913..4308403 - 496 170682802 - EcSMS35_4209 - integral membrane protein 4044 51.08 0 4308416..4308922 - 168 170680774 - EcSMS35_4210 - hypothetical protein 4045 52.92 0 4308939..4309913 - 324 170681055 - EcSMS35_4211 - periplasmic binding protein 4046 53.81 0 4309938..4310567 - 209 170679834 - EcSMS35_4212 - putative 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 4047 53.33 0 4310557..4311561 - 334 170683717 - EcSMS35_4213 - 2-dehydro-3-deoxygalactonokinase 4048 52.28 0 4311585..4312439 - 284 170683184 - EcSMS35_4214 - IclR family transcriptional regulator 4049 53.08 0 4312569..4313996 + 475 170682711 rmuC EcSMS35_4215 - DNA recombination protein RmuC 4050 51.72 0 4314091..4314846 + 251 170682083 ubiE EcSMS35_4216 - ubiquinone/menaquinone biosynthesis methyltransferase UbiE 4051 56.44 +1 4314860..4315465 + 201 170679770 - EcSMS35_4217 - hypothetical protein 4052 50.03 0 4315462..4317102 + 546 170681731 ubiB EcSMS35_4218 - 2-polyprenylphenol 6-hydroxylase 4053 45.56 0 4317181..4317450 + 89 170683516 tatA EcSMS35_4219 - sec-independent protein translocase protein TatA 4054 55.04 0 4317454..4317969 + 171 170680611 tatB EcSMS35_4220 - twin arginine-targeting protein translocase TatB 4055 51.87 0 4317972..4318748 + 258 170683092 tatC EcSMS35_4221 - twin arginine-targeting protein translocase TatC 4056 54.79 0 4318790..4319572 + 260 170684158 tatD EcSMS35_4223 - deoxyribonuclease TatD 4057 50.92 0 4319569..4320057 - 162 170682425 rfaH EcSMS35_4222 - transcriptional activator RfaH 4058 54.02 0 4320224..4321717 + 497 170682759 ubiD EcSMS35_4224 - 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 4059 51.99 0 4321763..4322464 + 233 170683060 fre EcSMS35_4225 - NAD(P)H-flavin reductase 50.50 MEAN 5.49 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0