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Escherichia coli SMS-3-5, complete genome - 1..5068389 4743 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3463 47.85 0 3678617..3678919 - 100 170681042 rplW EcSMS35_3613 - ribosomal protein L23 3464 52.97 0 3678916..3679521 - 201 170679638 rplD EcSMS35_3614 - ribosomal protein L4 3465 51.27 0 3679532..3680161 - 209 170680319 rplC EcSMS35_3615 - ribosomal protein L3 3466 55.45 0 3680194..3680505 - 103 170683626 rpsJ EcSMS35_3616 - ribosomal protein S10 3467 49.36 0 3680884..3681351 + 155 170682251 - EcSMS35_3618 - A24 family peptidase 3468 41.09 -1 3681348..3681824 - 158 170684300 bfr EcSMS35_3617 - bacterioferritin 3469 45.13 0 3681897..3682091 - 64 170682920 bfd EcSMS35_3619 - bacterioferritin-associated ferredoxin 3470 53.16 0 3682274..3683458 - 394 170681311 tuf2 EcSMS35_3620 - translation elongation factor Tu 3471 50.73 0 3683529..3685643 - 704 170681744 fusA EcSMS35_3621 - translation elongation factor G 3472 49.68 0 3685740..3686210 - 156 170680064 rpsG EcSMS35_3622 - ribosomal protein S7 3473 53.07 0 3686307..3686681 - 124 170683246 rpsL EcSMS35_3623 - ribosomal protein S12 3474 50.00 0 3686807..3687094 - 95 170682708 dsrH EcSMS35_3624 - sulfur relay protein TusD/DsrH 3475 50.00 0 3687102..3687461 - 119 170682208 tusC EcSMS35_3625 - sulfur relay protein TusC/DsrF 3476 55.30 0 3687461..3687847 - 128 170681621 tusD EcSMS35_3626 - sulfurtransferase TusD 3477 47.30 0 3687847..3688569 - 240 170681109 - EcSMS35_3627 - hypothetical protein 3478 48.34 0 3688736..3689548 - 270 170680696 fkpA EcSMS35_3628 - FKBP-type peptidyl-prolyl cis-trans isomerase FkpA 3479 53.42 0 3689769..3689987 + 72 170683809 - EcSMS35_3629 - slyX protein 3480 55.33 0 3690037..3690627 - 196 170683250 slyD EcSMS35_3630 - FKBP-type peptidyl-prolyl cis-trans isomerase SlyD 3481 48.26 0 3690722..3690922 - 66 170682580 - EcSMS35_3631 - hypothetical protein 3482 54.10 0 3690932..3692737 - 601 170682213 kefB EcSMS35_3632 - glutathione-regulated potassium-efflux system protein KefB 3483 56.70 +1 3692737..3693288 - 183 170684014 kefG EcSMS35_3633 - glutathione-regulated potassium-efflux system ancillary protein kefG 3484 55.69 0 3693419..3695332 + 637 170679823 - EcSMS35_3634 - ABC transporter, ATP-binding protein 3485 53.57 0 3695332..3696354 + 340 170683037 - EcSMS35_3635 - alpha/beta fold family hydrolase 3486 50.23 0 3696348..3696566 + 72 170683432 - EcSMS35_3636 - hypothetical protein 3487 53.45 0 3696620..3697489 + 289 170683032 - EcSMS35_3637 - phosphoribulokinase/uridine kinase family protein 3488 51.60 0 3697544..3697948 - 134 170682548 - EcSMS35_3638 - OsmC family protein 3489 49.76 0 3698250..3698882 + 210 170681629 crp EcSMS35_3639 - catabolite gene activator 3490 53.28 0 3698933..3701023 + 696 170682476 - EcSMS35_3640 - YccS/YhfK family integral membrane protein 3491 54.00 0 3701086..3702309 - 407 170679794 argD EcSMS35_3641 - acetylornithine/succinyldiaminopimelate aminotransferase 3492 53.55 0 3702395..3702958 - 187 170680557 pabA EcSMS35_3642 - aminodeoxychorismate synthase, component II 3493 53.73 0 3702990..3703592 - 200 170681998 fic EcSMS35_3643 - cell filamentation protein Fic 3494 51.31 0 3703854..3704426 - 190 170681864 ppiA EcSMS35_3644 - peptidyl-prolyl cis-trans isomerase A 3495 40.14 -1 3704570..3704716 - 48 170682492 - EcSMS35_3645 - hypothetical protein 3496 52.37 0 3704697..3705878 + 393 170682755 tsgA EcSMS35_3646 - major facilitator family transporter TsgA 3497 54.21 0 3706140..3708683 + 847 170683252 nirB EcSMS35_3647 - nitrite reductase [NAD(P)H], large subunit 3498 56.27 +1 3708680..3709006 + 108 170684098 nirD EcSMS35_3648 - nitrite reductase [NAD(P)H], small subunit 3499 54.52 0 3709131..3709937 + 268 170683994 nirC EcSMS35_3649 - nitrite transporter NirC 3500 54.00 0 3709956..3711329 + 457 170680692 cysG EcSMS35_3650 - siroheme synthase 3501 42.26 -1 3711580..3711747 + 55 170681033 - EcSMS35_3651 - putative lipoprotein 3502 57.27 +1 3711854..3712939 - 361 170682063 - EcSMS35_3652 - hypothetical protein 3503 53.56 0 3712951..3714255 - 434 170680136 - EcSMS35_3653 - hypothetical protein 3504 47.46 0 3714267..3714620 - 117 170681101 - EcSMS35_3654 - hypothetical protein 3505 52.56 0 3714631..3715509 - 292 170680454 - EcSMS35_3655 - phosphotriesterase family protein 3506 54.44 0 3715506..3716732 - 408 170680107 - EcSMS35_3656 - metalloenzyme domain-containing protein 3507 53.95 0 3716732..3717895 - 387 170684172 - EcSMS35_3657 - alanine racemase 3508 50.41 0 3717979..3718341 - 120 170680031 - EcSMS35_3658 - hypothetical protein 3509 51.66 0 3718358..3719263 - 301 170680763 - EcSMS35_3659 - hypothetical protein 3510 52.24 0 3719423..3720427 - 334 170681086 trpS EcSMS35_3660 - tryptophanyl-tRNA synthetase 3511 52.31 0 3720420..3721178 - 252 170681789 gph EcSMS35_3661 - phosphoglycolate phosphatase 3512 50.44 0 3721171..3721848 - 225 170680384 rpe EcSMS35_3662 - ribulose-phosphate 3-epimerase 3513 49.10 0 3721866..3722702 - 278 170683954 dam EcSMS35_3663 - DNA adenine methylase 3514 54.62 0 3722809..3724095 - 428 170683150 damX EcSMS35_3664 - DamX protein 3515 54.09 0 3724187..3725275 - 362 170680643 aroB EcSMS35_3665 - 3-dehydroquinate synthase 3516 47.94 0 3725332..3726009 - 225 170680023 aroK EcSMS35_3666 - shikimate kinase 3517 54.00 0 3726254..3727492 - 412 170681657 - EcSMS35_3667 - protein transporter HofQ 3518 52.10 0 3727404..3727808 - 134 170681152 - EcSMS35_3668 - hypothetical protein 3519 57.58 +1 3727798..3727995 - 65 170682127 - EcSMS35_3669 - hypothetical protein 3520 57.50 +1 3727981..3728100 + 39 170683769 - EcSMS35_3670 - hypothetical protein 3521 54.63 0 3728222..3728761 - 179 170683225 - EcSMS35_3671 - PilN family protein 3522 57.95 +1 3728761..3729540 - 259 170680610 hofM EcSMS35_3672 - HofM protein 3523 54.79 0 3729636..3732212 + 858 170683444 mrcA EcSMS35_3673 - penicillin-binding protein 1A 3524 50.98 0 3732380..3732940 - 186 170680526 nudE EcSMS35_3674 - ADP compounds hydrolase NudE 3525 48.33 0 3733144..3733263 + 39 170680061 - EcSMS35_3675 - hypothetical protein 3526 52.76 0 3733260..3735395 + 711 170681885 - EcSMS35_3676 - hypothetical protein 3527 51.57 0 3735460..3736128 + 222 170681347 - EcSMS35_3677 - HAD family hydrolase 3528 52.74 0 3736139..3736540 + 133 170680851 hslR EcSMS35_3678 - heat shock protein 15 3529 52.79 0 3736565..3737443 + 292 170682746 hslO EcSMS35_3679 - chaperonin HslO 3530 50.03 0 3737577..3739301 - 574 170682230 - EcSMS35_3680 - hypothetical protein 3531 32.56 -2 3739307..3739435 - 42 170684065 - EcSMS35_3681 - hypothetical protein 3532 53.54 0 3739680..3741302 + 540 170683548 pckA EcSMS35_3682 - phosphoenolpyruvate carboxykinase (ATP) 3533 42.45 -1 3741417..3741734 + 105 170682459 - EcSMS35_3683 - hypothetical protein 3534 45.12 0 3741793..3742089 + 98 170680949 - EcSMS35_3684 - hypothetical protein 3535 56.98 +1 3742121..3743473 - 450 170681185 envZ EcSMS35_3685 - osmolarity sensor protein EnvZ 3536 55.14 0 3743470..3744189 - 239 170679581 ompR EcSMS35_3686 - transcriptional regulatory protein OmpR 3537 49.90 0 3744417..3744893 + 158 170680405 greB EcSMS35_3687 - transcription elongation factor GreB 3538 56.72 +1 3744990..3747311 + 773 170683595 - EcSMS35_3688 - putative transcriptional accessory protein 3539 48.68 0 3747749..3747976 + 75 170683798 feoA EcSMS35_3689 - ferrous iron transport protein A 3540 54.87 0 3747993..3750314 + 773 170682365 feoB EcSMS35_3690 - ferrous iron transport protein B 3541 56.12 +1 3750314..3750550 + 78 170683053 - EcSMS35_3691 - hypothetical protein 3542 47.90 0 3750753..3751631 + 292 170683554 - EcSMS35_3692 - hypothetical protein 3543 56.55 +1 3751660..3752430 - 256 170680513 - EcSMS35_3693 - putative pimeloyl-BioC--CoA transferase BioH 3544 56.14 +1 3752468..3753151 + 227 170681819 gntX EcSMS35_3694 - protein GntX 3545 52.78 0 3753210..3753785 + 191 170681204 gntY EcSMS35_3695 - protein GntY 3546 53.53 0 3754146..3755462 + 438 170681024 gntT EcSMS35_3696 - high-affinity gluconate transporter 3547 55.16 0 3755507..3757591 - 694 170682539 malQ EcSMS35_3697 - 4-alpha-glucanotransferase 3548 51.96 0 3757601..3759994 - 797 170683923 malP EcSMS35_3698 - maltodextrin phosphorylase 3549 53.73 0 3760617..3763322 + 901 170683264 malT EcSMS35_3699 - maltose regulon activator MalT 3550 59.98 +1 3763365..3764381 - 338 170680706 rtcA EcSMS35_3700 - RNA 3'-terminal phosphate cyclase 3551 50.20 0 3764385..3765611 - 408 170679877 rtcB EcSMS35_3701 - RtcB protein 3552 55.28 0 3765799..3767397 + 532 170680280 rtcR EcSMS35_3703 - sigma-54 dependent transcriptional regulator RtcR 3553 54.41 0 3767379..3768137 - 252 170683823 glpR EcSMS35_3702 - glycerol-3-phosphate regulon repressor 3554 53.91 0 3768154..3768984 - 276 170683698 - EcSMS35_3704 - S54 family peptidase 3555 54.43 0 3769029..3769355 - 108 170684232 glpE EcSMS35_3705 - thiosulfate sulfurtransferase glpE 3556 54.98 0 3769545..3771050 + 501 170682330 glpD EcSMS35_3706 - glycerol-3-phosphate dehydrogenase 3557 46.83 0 3771868..3772860 - 330 170683549 - EcSMS35_3708 - hypothetical protein 3558 46.88 0 3772886..3774391 - 501 170681684 - EcSMS35_3709 - hypothetical protein 3559 51.55 0 3774520..3776967 - 815 170682143 glgP EcSMS35_3710 - glycogen phosphorylase 3560 54.74 0 3776986..3778419 - 477 170680998 glgA EcSMS35_3711 - starch synthase 3561 52.62 0 3778419..3779714 - 431 170682122 glgC EcSMS35_3712 - glucose-1-phosphate adenylyltransferase 3562 54.00 0 3779732..3781705 - 657 170679803 glgX EcSMS35_3713 - glycogen debranching enzyme GlgX 50.50 MEAN 5.49 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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