version 1.0
Escherichia coli SMS-3-5, complete genome - 1..5068389 4743 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3349 55.43 0 3565079..3565861 - 260 170684208 - EcSMS35_3490 - toluene ABC transporter, permease protein 3350 54.44 0 3565869..3566678 - 269 170683530 - EcSMS35_3491 - toluene ABC transporter, ATP-binding protein 3351 51.94 0 3566888..3567865 + 325 170679873 - EcSMS35_3492 - sodium/calcium exchanger protein 3352 52.38 0 3567879..3568865 + 328 170679857 kdsD EcSMS35_3493 - arabinose 5-phosphate isomerase 3353 52.56 0 3568886..3569452 + 188 170681509 kdsC EcSMS35_3494 - 3-deoxy-manno-octulosonate-8-phosphatase 3354 46.18 0 3569449..3570024 + 191 170680880 - EcSMS35_3495 - hypothetical protein 3355 49.28 0 3569993..3570550 + 185 170682501 lptA EcSMS35_3496 - lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-binding protein 3356 54.13 0 3570557..3571282 + 241 170680394 lptB EcSMS35_3497 - lipopolysaccharide ABC transporter, ATP-binding protein 3357 52.86 0 3571330..3572763 + 477 170684031 rpoN EcSMS35_3498 - RNA polymerase sigma-54 factor 3358 44.79 -1 3572786..3573073 + 95 170683293 yfiA EcSMS35_3499 - ribosomal subunit interface protein 3359 51.83 0 3573191..3573682 + 163 170680578 ptsN EcSMS35_3500 - PTS IIA-like nitrogen-regulatory protein PtsN 3360 52.28 0 3573728..3574582 + 284 170679896 - EcSMS35_3501 - hypothetical protein 3361 48.72 0 3574579..3574851 + 90 170680806 ptsO EcSMS35_3502 - phosphocarrier protein NPr 3362 51.03 0 3575065..3575697 + 210 170682070 - EcSMS35_3504 - hypothetical protein 3363 52.54 0 3575694..3576422 - 242 170681307 mtgA EcSMS35_3503 - monofunctional biosynthetic peptidoglycan transglycosylase 3364 53.52 0 3576419..3577072 - 217 170683821 elbB EcSMS35_3505 - enhancing lycopene biosynthesis protein 2 3365 50.49 0 3577302..3579638 - 778 170683438 arcB EcSMS35_3506 - aerobic respiration control sensor protein ArcB 3366 55.81 0 3579734..3580663 - 309 170683121 - EcSMS35_3507 - radical SAM family protein 3367 56.79 +1 3581244..3585797 + 1517 170682676 gltB EcSMS35_3508 - glutamate synthase (NADPH), large subunit 3368 56.31 +1 3585810..3587228 + 472 170682339 gltD EcSMS35_3509 - glutamate synthase (NADPH), small subunit 3369 59.11 +1 3587461..3588783 + 440 170683811 - EcSMS35_3510 - SWIM zinc finger domain-containing protein 3370 57.26 +1 3588780..3590384 + 534 170683178 - EcSMS35_3511 - hypothetical protein 3371 55.43 0 3590381..3591475 + 364 170680609 - EcSMS35_3512 - AAA family ATPase 3372 59.42 +1 3591493..3593742 + 749 170681434 - EcSMS35_3513 - hypothetical protein 3373 55.38 0 3593732..3594901 + 389 170681772 - EcSMS35_3514 - VWA domain-containing protein 3374 46.26 0 3595123..3595269 - 48 170681084 - EcSMS35_3515 - hypothetical protein 3375 46.45 0 3595939..3596403 - 154 170682177 - EcSMS35_3516 - hypothetical protein 3376 57.65 +1 3596400..3597275 - 291 170683075 - EcSMS35_3517 - ROK family protein 3377 58.12 +1 3597272..3597961 - 229 170683961 - EcSMS35_3518 - putative N-acetylmannosamine-6-phosphate 2-epimerase 3378 55.60 0 3598009..3599499 - 496 170683321 nanT1 EcSMS35_3519 - major facilitator superfamily transporter sialate:H(+) symporter 3379 51.57 0 3599608..3600501 - 297 170680563 nanA EcSMS35_3520 - N-acetylneuraminate lyase 3380 53.77 0 3600623..3601405 - 260 170679875 nanR EcSMS35_3521 - transcriptional regulator NanR 3381 51.02 0 3601794..3603161 + 455 170681874 - EcSMS35_3522 - putative anaerobic C4-dicarboxylate transporter DcuD 3382 55.02 0 3603205..3603702 - 165 170681406 sspB EcSMS35_3523 - stringent starvation protein B 3383 53.83 0 3603708..3604346 - 212 170680756 sspA EcSMS35_3524 - stringent starvation protein A 3384 40.97 -1 3604600..3604743 + 47 170682369 - EcSMS35_3526 - hypothetical protein 3385 52.42 0 3604740..3605132 - 130 170682792 rpsI EcSMS35_3525 - ribosomal protein S9 3386 50.58 0 3605148..3605576 - 142 170681781 rplM EcSMS35_3527 - ribosomal protein L13 3387 51.60 0 3605795..3606922 - 375 170683950 - EcSMS35_3528 - AFG1 family ATPase 3388 54.14 0 3607116..3607514 + 132 170683379 - EcSMS35_3529 - hypothetical protein 3389 52.05 0 3607668..3609035 + 455 170682050 degQ EcSMS35_3530 - serine peptidase DegQ 3390 52.62 0 3609125..3610192 + 355 170683919 degS EcSMS35_3531 - periplasmic serine peptidase DegS 3391 51.65 0 3610255..3611193 - 312 170681278 mdh EcSMS35_3532 - malate dehydrogenase, NAD-dependent 3392 48.41 0 3611628..3612098 + 156 170682546 argR EcSMS35_3533 - arginine repressor 3393 48.48 0 3612463..3612726 + 87 170683417 ycfR EcSMS35_3534 - protein YcfR 3394 43.96 -1 3612782..3613054 - 90 170680425 - EcSMS35_3535 - hypothetical protein 3395 51.83 0 3613146..3615113 - 655 170682336 aaeB EcSMS35_3536 - p-hydroxybenzoic acid efflux pump subunit aaeB 3396 53.70 0 3615119..3616051 - 310 170683027 aaeA EcSMS35_3537 - p-hydroxybenzoic acid efflux pump subunit aaeA 3397 47.62 0 3616059..3616331 - 90 170683446 aaeX EcSMS35_3538 - protein AaeX 3398 53.12 0 3616445..3617374 + 309 170684070 aaeR EcSMS35_3539 - transcriptional activator AaeR 3399 54.84 0 3617502..3618947 - 481 170680441 tldD EcSMS35_3540 - protein TldD 3400 53.30 0 3619103..3622903 - 1266 170683155 - EcSMS35_3541 - hypothetical protein 3401 52.38 0 3622971..3624440 - 489 170679965 cafA EcSMS35_3542 - ribonuclease G 3402 53.37 0 3624430..3625023 - 197 170679685 maf1 EcSMS35_3543 - septum formation protein Maf 3403 50.51 0 3625032..3625520 - 162 170683272 lytS EcSMS35_3544 - rod shape-determining protein MreD 3404 56.16 +1 3625520..3626623 - 367 170680238 mreC EcSMS35_3545 - rod shape-determining protein MreC 3405 54.41 0 3626689..3627732 - 347 170684309 mreB EcSMS35_3546 - rod shape-determining protein MreB 3406 50.90 0 3628037..3629977 - 646 170679868 - EcSMS35_3547 - cyclic diguanylate phosphodiesterase domain-containing protein 3407 55.38 0 3630129..3631103 + 324 170682984 - EcSMS35_3548 - quinone oxidoreductase 3408 46.81 0 3631140..3631970 + 276 170681262 - EcSMS35_3549 - hypothetical protein 3409 51.80 0 3632836..3633306 + 156 170680327 accB EcSMS35_3550 - acetyl-CoA carboxylase, biotin carboxyl carrier protein 3410 53.48 0 3633317..3634666 + 449 170683611 accC EcSMS35_3551 - acetyl-CoA carboxylase, biotin carboxylase 3411 54.73 0 3634775..3635017 + 80 170681333 - EcSMS35_3552 - hypothetical protein 3412 54.27 0 3635007..3636458 + 483 170679603 panF EcSMS35_3553 - sodium/pantothenate symporter 3413 54.99 0 3636470..3637351 + 293 170682751 prmA EcSMS35_3554 - ribosomal protein L11 methyltransferase 3414 52.28 0 3637680..3638645 + 321 170680881 dusB EcSMS35_3555 - tRNA-dihydrouridine synthase B 3415 47.47 0 3638671..3638967 + 98 170682316 fis EcSMS35_3556 - DNA-binding protein Fis 3416 48.02 0 3639053..3639937 + 294 170680849 - EcSMS35_3557 - N4/N6-methyltransferase family DNA methylase 3417 40.35 -1 3640087..3640200 + 37 170682462 - EcSMS35_3558 - hypothetical protein 3418 43.29 -1 3640203..3640865 - 220 170683693 - EcSMS35_3559 - putative transcriptional regulator EnvR 3419 52.50 0 3641264..3642421 + 385 170683539 acrE EcSMS35_3560 - acriflavine resistance protein E 3420 54.05 0 3645783..3646004 + 73 170681493 - EcSMS35_3562 - putative lipoprotein 3421 49.61 0 3646435..3647460 + 341 170682914 - EcSMS35_3563 - amino acid ABC transporter, periplasmic amino acid-binding protein 3422 50.25 0 3647528..3648709 + 393 170682235 - EcSMS35_3564 - His/Glu/Gln/Arg/opine ABC transporter permease 3423 52.36 0 3648719..3649822 + 367 170684312 - EcSMS35_3565 - His/Glu/Gln/Arg/opine ABC transporter permease 3424 47.30 0 3649830..3650588 + 252 170680424 - EcSMS35_3566 - amino acid ABC transporter, ATP-binding protein 3425 49.01 0 3656471..3657025 + 184 170681930 - EcSMS35_3576 - hypothetical protein 3426 48.45 0 3657001..3657258 - 85 170681761 - EcSMS35_3575 - hypothetical protein 3427 49.21 0 3657255..3658073 - 272 170682537 aroE EcSMS35_3577 - shikimate 5-dehydrogenase 3428 53.05 0 3658078..3658650 - 190 170683354 - EcSMS35_3578 - Sua5/YciO/YrdC/YwlC family protein 3429 50.46 0 3658655..3659197 - 180 170683861 - EcSMS35_3579 - topoisomerase DNA-binding C4 zinc finger domain-containing protein 3430 45.78 0 3659226..3659699 - 157 170679842 smg EcSMS35_3580 - protein Smg 3431 50.76 0 3659671..3660795 - 374 170681650 dprA EcSMS35_3581 - DNA protecting protein DprA 3432 47.06 0 3660925..3661434 + 169 170680840 def EcSMS35_3582 - peptide deformylase 3433 52.74 0 3661449..3662396 + 315 170682749 fmt EcSMS35_3583 - methionyl-tRNA formyltransferase 3434 49.69 0 3662442..3663731 + 429 170684100 rsmB EcSMS35_3584 - ribosomal RNA small subunit methyltransferase B 3435 50.11 0 3663753..3665129 + 458 170680013 trkA EcSMS35_3585 - Trk system potassium uptake protein TrkA 3436 44.77 -1 3665259..3665669 + 136 170680177 mscL EcSMS35_3586 - large conductance mechanosensitive channel protein 3437 50.00 0 3665940..3666365 - 141 170680832 zntR EcSMS35_3587 - Zn(II)-responsive transcriptional regulator 3438 46.61 0 3666376..3666744 - 122 170682418 - EcSMS35_3588 - hypothetical protein 3439 53.65 0 3666851..3667234 - 127 170682965 rplQ EcSMS35_3589 - ribosomal protein L17 3440 52.22 0 3667275..3668264 - 329 170683426 rpoA EcSMS35_3590 - DNA-directed RNA polymerase, alpha subunit 3441 50.72 0 3668290..3668910 - 206 170683332 rpsD EcSMS35_3591 - ribosomal protein S4 3442 51.54 0 3668944..3669333 - 129 170679818 rpsK EcSMS35_3592 - ribosomal protein S11 3443 51.82 0 3669350..3669706 - 118 170683249 rpsM EcSMS35_3593 - ribosomal protein S13p 3444 47.86 0 3669853..3669969 - 38 170682559 rpmJ1 EcSMS35_3594 - ribosomal protein L36 3445 49.62 0 3670001..3671332 - 443 170681949 secY EcSMS35_3595 - preprotein translocase, SecY subunit 3446 53.79 0 3671340..3671774 - 144 170683231 rplO EcSMS35_3596 - ribosomal protein L15 3447 50.00 0 3671778..3671957 - 59 170683915 rpmD EcSMS35_3597 - ribosomal protein L30 3448 50.00 0 3671961..3672464 - 167 170679847 rpsE EcSMS35_3598 - ribosomal protein S5 50.50 MEAN 5.49 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.