version 1.0
Escherichia coli SMS-3-5, complete genome - 1..5068389 4743 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3265 52.56 0 3484548..3485249 + 233 170681550 - EcSMS35_3404 - pirin family protein 3266 51.19 0 3485269..3485436 + 55 170681322 - EcSMS35_3405 - hypothetical protein 3267 56.60 +1 3485569..3486879 - 436 170681817 - EcSMS35_3406 - hypothetical protein 3268 50.68 0 3486907..3488238 - 443 170679999 - EcSMS35_3407 - serine transporter family protein 3269 53.39 0 3488513..3489883 - 456 170680456 tdcG EcSMS35_3408 - L-serine ammonia-lyase TdcG 3270 52.56 0 3489949..3490338 - 129 170680786 - EcSMS35_3409 - putative endoribonuclease L-PSP 3271 52.90 0 3490352..3492646 - 764 170681495 pflB1 EcSMS35_3410 - formate acetyltransferase 3272 48.22 0 3492680..3493888 - 402 170680069 tdcD EcSMS35_3411 - propionate kinase 3273 49.92 0 3493914..3495245 - 443 170680237 tdcC EcSMS35_3412 - threonine/serine transporter 3274 46.57 0 3495267..3496256 - 329 170683614 tdcB EcSMS35_3413 - threonine dehydratase, catabolic 3275 42.60 -1 3496355..3497293 - 312 170684278 tdcA EcSMS35_3414 - transcriptional regulator TdcA 3276 32.17 -2 3497482..3497826 + 114 170680434 tdcR EcSMS35_3415 - threonine dehydratase operon activator protein 3277 44.93 -1 3497908..3498045 - 45 170681106 - EcSMS35_3416 - hypothetical protein 3278 35.37 -2 3498082..3498621 + 179 170683716 - EcSMS35_3417 - hypothetical protein 3279 31.57 -2 3498643..3499830 + 395 170679783 - EcSMS35_3418 - hypothetical protein 3280 53.05 0 3500461..3501606 - 381 170683586 garK EcSMS35_3419 - glycerate kinase 3281 52.66 0 3501703..3502587 - 294 170683197 garR EcSMS35_3420 - 2-hydroxy-3-oxopropionate reductase 3282 53.05 0 3502623..3503393 - 256 170682298 garL EcSMS35_3421 - 2-dehydro-3-deoxyglucarate aldolase 3283 51.09 0 3503409..3504743 - 444 170683081 garP EcSMS35_3422 - galactarate permease GarP 3284 31.75 -2 3504764..3504889 + 41 170680979 - EcSMS35_3423 - hypothetical protein 3285 39.17 -2 3504952..3505071 + 39 170681459 - EcSMS35_3424 - hypothetical protein 3286 53.05 0 3505118..3506689 + 523 170680919 garD EcSMS35_3425 - galactarate dehydratase 3287 43.97 -1 3507033..3507173 + 46 170681751 sohA EcSMS35_3426 - HtrA suppressor protein SohA 3288 44.30 -1 3507173..3507637 + 154 170682166 - EcSMS35_3427 - hypothetical protein 3289 52.47 0 3507692..3508501 - 269 170680176 - EcSMS35_3428 - DeoR family transcriptional regulator 3290 54.80 0 3508750..3510030 + 426 170680844 - EcSMS35_3429 - D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 3291 50.84 0 3510053..3510526 + 157 170683585 agaV EcSMS35_3430 - PTS system, N-acetylgalactosamine-specific, IIB component 3292 56.28 +1 3510537..3511316 + 259 170684243 agaW EcSMS35_3431 - PTS system, N-acetylgalactosamine-specific, IIC component 3293 52.56 0 3511306..3512184 + 292 170683484 agaE EcSMS35_3432 - PTS system N-acetylgalactosamine-specific, IID component 3294 51.95 0 3512202..3512636 + 144 170684074 agaF EcSMS35_3433 - PTS system, mannose/sorbose-specific, IIA component 3295 57.92 +1 3512612..3513766 + 384 170681130 nagA1 EcSMS35_3434 - N-acetylglucosamine-6-phosphate deacetylase 3296 57.06 +1 3514117..3515271 + 384 170682634 - EcSMS35_3435 - AgaS family sugar isomerase 3297 52.50 0 3515284..3516144 + 286 170682643 agaY EcSMS35_3436 - tagatose-1,6-bisphosphate aldolase agaY 3298 44.23 -1 3516311..3516787 + 158 170683275 agaB EcSMS35_3437 - PTS system, D galactosamine-specific, IIB component 3299 51.24 0 3516826..3517629 + 267 170681846 agaC EcSMS35_3438 - PTS system, N-acetylgalactosamine-specific EIIC component 3300 49.12 0 3517619..3518410 + 263 170681996 agaD EcSMS35_3439 - PTS system, D-galactosamine-specific, IID component 3301 50.52 0 3518411..3519178 + 255 170681234 - EcSMS35_3440 - putative galactosamine-6-phosphate isomerase 3302 54.28 0 3519228..3520091 - 287 170681783 - EcSMS35_3441 - tetrapyrrole methylase family protein 3303 54.34 0 3520156..3522192 + 678 170679956 - EcSMS35_3442 - putative lipoprotein 3304 55.05 0 3522150..3522545 + 131 170680465 - EcSMS35_3443 - hypothetical protein 3305 49.75 0 3522565..3523155 + 196 170682125 diaA EcSMS35_3444 - DnaA initiator-associating protein DiaA 3306 53.82 0 3523165..3523740 + 191 170680506 - EcSMS35_3445 - phospholipid-binding domain-containing protein 3307 57.64 +1 3523853..3524893 - 346 170683334 - EcSMS35_3446 - putative permease 3308 55.35 0 3524966..3525601 - 211 170680214 - EcSMS35_3447 - NAD dependent epimerase/dehydratase family protein 3309 51.06 0 3525729..3526247 + 172 170683857 - EcSMS35_3449 - PfpI family intracellular peptidase 3310 53.83 0 3526227..3526670 - 147 170682320 - EcSMS35_3448 - hypothetical protein 3311 54.46 0 3526721..3527023 + 100 170681935 - EcSMS35_3451 - GIY-YIG catalytic domain-containing protein 3312 55.16 0 3527010..3527513 - 167 170682653 - EcSMS35_3450 - acetyltransferase 3313 51.05 0 3527507..3528031 - 174 170680098 - EcSMS35_3452 - sterol-binding protein 3314 34.21 -2 3528021..3528134 - 37 170681790 - EcSMS35_3453 - hypothetical protein 3315 57.33 +1 3528240..3529235 + 331 170683910 - EcSMS35_3454 - U32 family peptidase 3316 56.31 +1 3529244..3530122 + 292 170684049 - EcSMS35_3455 - U32 family peptidase 3317 56.65 +1 3530203..3531210 + 335 170679737 - EcSMS35_3456 - luciferase family monooxygenase 3318 53.73 0 3531329..3532573 - 414 170683709 mtr EcSMS35_3457 - tryptophan-specific transport protein 3319 55.66 0 3532727..3534616 - 629 170684314 deaD EcSMS35_3458 - cold-shock DEAD box protein A 3320 48.14 0 3534796..3535680 - 294 170682635 nlpI EcSMS35_3459 - lipoprotein NlpI 3321 53.70 0 3535789..3537924 - 711 170682265 pnp EcSMS35_3460 - polyribonucleotide nucleotidyltransferase 3322 51.85 0 3538171..3538440 - 89 170681850 rpsO EcSMS35_3461 - ribosomal protein S15 3323 53.02 0 3538589..3539533 - 314 170680914 truB EcSMS35_3462 - tRNA pseudouridine synthase B 3324 52.99 0 3539533..3539934 - 133 170680547 rbfA EcSMS35_3463 - ribosome-binding factor A 3325 53.31 0 3540098..3542770 - 890 170683744 infB EcSMS35_3464 - translation initiation factor IF-2 3326 52.89 0 3542795..3544282 - 495 170680571 nusA EcSMS35_3465 - transcription termination/antitermination factor NusA 3327 49.68 0 3544310..3544774 - 154 170680823 - EcSMS35_3466 - hypothetical protein 3328 53.20 0 3545393..3546736 + 447 170681371 argG EcSMS35_3468 - argininosuccinate synthase 3329 43.68 -1 3546744..3548261 - 505 170680504 yhbX EcSMS35_3469 - inner membrane protein yhbX 3330 49.85 0 3548929..3549261 - 110 170680429 secG EcSMS35_3471 - preprotein translocase, SecG subunit 3331 54.11 0 3549489..3550826 - 445 170684162 glmM EcSMS35_3472 - phosphoglucosamine mutase 3332 51.71 0 3550819..3551667 - 282 170682317 folP EcSMS35_3473 - dihydropteroate synthase 3333 53.45 0 3551757..3553700 - 647 170682536 hflB EcSMS35_3474 - ATP-dependent metallopeptidase HflB 3334 50.16 0 3553791..3554420 - 209 170681323 rrmJ EcSMS35_3475 - ribosomal RNA large subunit methyltransferase J 3335 48.64 0 3554546..3554839 + 97 170681512 - EcSMS35_3476 - putative RNA-binding protein 3336 48.64 0 3554995..3555471 - 158 170683303 greA EcSMS35_3477 - transcription elongation factor GreA 3337 53.14 0 3555720..3557153 + 477 170681453 dacB EcSMS35_3478 - D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 3338 53.20 0 3557194..3558366 - 390 170683110 - EcSMS35_3479 - GTP-binding protein Obg/CgtA 3339 53.00 0 3558382..3559347 - 321 170682428 - EcSMS35_3480 - putative transporter 3340 50.00 0 3559474..3559731 - 85 170684123 rpmA EcSMS35_3481 - ribosomal protein L27 3341 48.40 0 3559752..3560063 - 103 170684040 rplU EcSMS35_3482 - ribosomal protein L21 3342 52.88 0 3560322..3561293 + 323 170683435 ispB EcSMS35_3483 - octaprenyl-diphosphate synthase 3343 50.54 0 3561522..3561800 + 92 170680402 sfsB EcSMS35_3484 - sugar fermentation stimulation protein B 3344 53.17 0 3561848..3563107 - 419 170679709 murA EcSMS35_3485 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 3345 50.37 0 3563162..3563431 - 89 170683064 - EcSMS35_3486 - BolA/YrbA family protein 3346 53.74 0 3563576..3563869 - 97 170684008 yrbB EcSMS35_3487 - YrbB 3347 52.20 0 3563869..3564504 - 211 170682535 ttg2D EcSMS35_3488 - toluene tolerance protein Ttg2D 3348 49.28 0 3564523..3565074 - 183 170682506 - EcSMS35_3489 - Mce family protein 3349 55.43 0 3565079..3565861 - 260 170684208 - EcSMS35_3490 - toluene ABC transporter, permease protein 3350 54.44 0 3565869..3566678 - 269 170683530 - EcSMS35_3491 - toluene ABC transporter, ATP-binding protein 3351 51.94 0 3566888..3567865 + 325 170679873 - EcSMS35_3492 - sodium/calcium exchanger protein 3352 52.38 0 3567879..3568865 + 328 170679857 kdsD EcSMS35_3493 - arabinose 5-phosphate isomerase 3353 52.56 0 3568886..3569452 + 188 170681509 kdsC EcSMS35_3494 - 3-deoxy-manno-octulosonate-8-phosphatase 3354 46.18 0 3569449..3570024 + 191 170680880 - EcSMS35_3495 - hypothetical protein 3355 49.28 0 3569993..3570550 + 185 170682501 lptA EcSMS35_3496 - lipopolysaccharide ABC transporter, periplasmic lipopolysaccharide-binding protein 3356 54.13 0 3570557..3571282 + 241 170680394 lptB EcSMS35_3497 - lipopolysaccharide ABC transporter, ATP-binding protein 3357 52.86 0 3571330..3572763 + 477 170684031 rpoN EcSMS35_3498 - RNA polymerase sigma-54 factor 3358 44.79 -1 3572786..3573073 + 95 170683293 yfiA EcSMS35_3499 - ribosomal subunit interface protein 3359 51.83 0 3573191..3573682 + 163 170680578 ptsN EcSMS35_3500 - PTS IIA-like nitrogen-regulatory protein PtsN 3360 52.28 0 3573728..3574582 + 284 170679896 - EcSMS35_3501 - hypothetical protein 3361 48.72 0 3574579..3574851 + 90 170680806 ptsO EcSMS35_3502 - phosphocarrier protein NPr 3362 51.03 0 3575065..3575697 + 210 170682070 - EcSMS35_3504 - hypothetical protein 3363 52.54 0 3575694..3576422 - 242 170681307 mtgA EcSMS35_3503 - monofunctional biosynthetic peptidoglycan transglycosylase 3364 53.52 0 3576419..3577072 - 217 170683821 elbB EcSMS35_3505 - enhancing lycopene biosynthesis protein 2 50.50 MEAN 5.49 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0