version 1.0
Escherichia coli SMS-3-5, complete genome - 1..5068389 4743 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3216 53.84 0 3431981..3432892 + 303 170683099 ddtA EcSMS35_3354 - L(+)-tartrate dehydratase, alpha subunit 3217 53.47 0 3432889..3433494 + 201 170683420 ttdB EcSMS35_3355 - L(+)-tartrate dehydratase, beta subunit 3218 55.33 0 3433542..3435005 + 487 170681701 - EcSMS35_3356 - anion transporter 3219 56.80 +1 3435048..3436061 - 337 170682206 gcp EcSMS35_3357 - O-sialoglycoprotein endopeptidase 3220 51.85 0 3436299..3436514 + 71 170680203 rpsU EcSMS35_3358 - ribosomal protein S21 3221 52.12 0 3436625..3438370 + 581 170680884 dnaG EcSMS35_3359 - DNA primase 3222 52.99 0 3438565..3440406 + 613 170683578 rpoD EcSMS35_3360 - RNA polymerase sigma factor RpoD 3223 51.42 0 3440465..3441028 + 187 170684265 - EcSMS35_3361 - hypothetical protein 3224 53.65 0 3441085..3441591 - 168 170682273 mug EcSMS35_3362 - G/U mismatch-specific DNA glycosylase 3225 56.99 +1 3441845..3442609 - 254 170682681 - EcSMS35_3364 - siderophore-interacting protein 3226 53.04 0 3442896..3443519 + 207 170680145 - EcSMS35_3365 - PadR family transcriptional regulator 3227 54.96 0 3443548..3445068 - 506 170682786 aer EcSMS35_3366 - aerotaxis receptor 3228 55.43 0 3445576..3446865 + 429 170681164 ygjG EcSMS35_3367 - putrescine aminotransferase 3229 51.35 0 3446907..3447239 - 110 170681948 - EcSMS35_3368 - putative methionyl-tRNA synthetase, beta subunit 3230 51.32 0 3447457..3448440 + 327 170682761 ebgR EcSMS35_3369 - HTH-type transcriptional regulator EbgR 3231 54.06 0 3448624..3451716 + 1030 170680616 ebgA EcSMS35_3370 - beta-galactosidase, subunit alpha 3232 45.33 0 3451713..3452162 + 149 170683783 ebgC EcSMS35_3371 - evolved beta-galactosidase, beta subunit 3233 49.51 0 3452225..3453658 + 477 170679908 - EcSMS35_3372 - amino acid permease family protein 3234 52.19 0 3453792..3454862 + 356 170680553 - EcSMS35_3373 - hypothetical protein 3235 54.12 0 3454879..3457230 + 783 170681156 - EcSMS35_3374 - hypothetical protein 3236 56.76 +1 3457401..3459419 + 672 170679814 fadH EcSMS35_3375 - 2,4-dienoyl-CoA reductase 3237 53.65 0 3459537..3460673 - 378 170684079 - EcSMS35_3376 - methyltransferase family protein 3238 52.18 0 3460758..3461261 + 167 170683556 - EcSMS35_3377 - hypothetical protein 3239 49.42 0 3461338..3462021 + 227 170682034 - EcSMS35_3378 - putative SanA protein 3240 52.18 0 3462100..3463086 + 328 170682416 - EcSMS35_3379 - oxidoreductase, NAD binding 3241 53.52 0 3463370..3464335 + 321 170681879 alx EcSMS35_3380 - protein Alx 3242 55.26 0 3464659..3465903 + 414 170681216 sstT EcSMS35_3381 - sodium:serine/threonine symporter 3243 50.91 0 3465907..3466458 - 183 170679962 - EcSMS35_3382 - putative inner membrane protein 3244 53.70 0 3466541..3468028 - 495 170681891 uxaA EcSMS35_3383 - altronate dehydratase 3245 53.72 0 3468043..3469455 - 470 170683343 uxaC EcSMS35_3384 - glucuronate isomerase 3246 54.43 0 3469938..3471236 + 432 170683899 exuT EcSMS35_3385 - hexuronate transporter 3247 47.95 0 3471312..3472406 - 364 170684132 - EcSMS35_3386 - pilus biogenesis initiator 3248 46.74 0 3472403..3475087 - 894 170682266 - EcSMS35_3387 - hypothetical protein 3249 46.31 0 3475178..3475678 - 166 170683018 - EcSMS35_3388 - CS1 type fimbrial major subunit 3250 39.61 -1 3475708..3476424 - 238 170681823 - EcSMS35_3389 - putative CFA/I fimbrial subunit A 3251 16.28 -2 3476504..3476632 - 42 170682044 - EcSMS35_3390 - hypothetical protein 3252 50.71 0 3476714..3477490 + 258 170680363 exuR EcSMS35_3391 - exu regulon transcriptional regulator 3253 37.61 -2 3477676..3477792 - 38 170681007 - EcSMS35_3392 - hypothetical protein 3254 50.83 0 3477835..3478497 + 220 170684106 - EcSMS35_3393 - putative inner membrane protein 3255 54.47 0 3478516..3478884 + 122 170680365 - EcSMS35_3394 - hypothetical protein 3256 48.24 0 3479031..3479399 + 122 170680273 - EcSMS35_3395 - hypothetical protein 3257 54.90 0 3479437..3479742 + 101 170681844 - EcSMS35_3396 - hypothetical protein 3258 53.33 0 3479745..3480149 + 134 170683687 - EcSMS35_3397 - hypothetical protein 3259 56.67 +1 3480139..3480438 + 99 170680495 - EcSMS35_3398 - hypothetical protein 3260 49.48 0 3480534..3481016 + 160 170682888 - EcSMS35_3399 - putative inner membrane protein YqjF 3261 51.47 0 3481264..3482250 + 328 170682085 - EcSMS35_3400 - hypothetical protein 3262 51.37 0 3482533..3482898 + 121 170681534 - EcSMS35_3401 - putative inner membrane protein YhaH 3263 43.70 -1 3483140..3483496 + 118 170680803 - EcSMS35_3402 - putative inner membrane protein 3264 55.74 0 3483547..3484443 - 298 170679637 - EcSMS35_3403 - LysR family transcriptional regulator 3265 52.56 0 3484548..3485249 + 233 170681550 - EcSMS35_3404 - pirin family protein 3266 51.19 0 3485269..3485436 + 55 170681322 - EcSMS35_3405 - hypothetical protein 3267 56.60 +1 3485569..3486879 - 436 170681817 - EcSMS35_3406 - hypothetical protein 3268 50.68 0 3486907..3488238 - 443 170679999 - EcSMS35_3407 - serine transporter family protein 3269 53.39 0 3488513..3489883 - 456 170680456 tdcG EcSMS35_3408 - L-serine ammonia-lyase TdcG 3270 52.56 0 3489949..3490338 - 129 170680786 - EcSMS35_3409 - putative endoribonuclease L-PSP 3271 52.90 0 3490352..3492646 - 764 170681495 pflB1 EcSMS35_3410 - formate acetyltransferase 3272 48.22 0 3492680..3493888 - 402 170680069 tdcD EcSMS35_3411 - propionate kinase 3273 49.92 0 3493914..3495245 - 443 170680237 tdcC EcSMS35_3412 - threonine/serine transporter 3274 46.57 0 3495267..3496256 - 329 170683614 tdcB EcSMS35_3413 - threonine dehydratase, catabolic 3275 42.60 -1 3496355..3497293 - 312 170684278 tdcA EcSMS35_3414 - transcriptional regulator TdcA 3276 32.17 -2 3497482..3497826 + 114 170680434 tdcR EcSMS35_3415 - threonine dehydratase operon activator protein 3277 44.93 -1 3497908..3498045 - 45 170681106 - EcSMS35_3416 - hypothetical protein 3278 35.37 -2 3498082..3498621 + 179 170683716 - EcSMS35_3417 - hypothetical protein 3279 31.57 -2 3498643..3499830 + 395 170679783 - EcSMS35_3418 - hypothetical protein 3280 53.05 0 3500461..3501606 - 381 170683586 garK EcSMS35_3419 - glycerate kinase 3281 52.66 0 3501703..3502587 - 294 170683197 garR EcSMS35_3420 - 2-hydroxy-3-oxopropionate reductase 3282 53.05 0 3502623..3503393 - 256 170682298 garL EcSMS35_3421 - 2-dehydro-3-deoxyglucarate aldolase 3283 51.09 0 3503409..3504743 - 444 170683081 garP EcSMS35_3422 - galactarate permease GarP 3284 31.75 -2 3504764..3504889 + 41 170680979 - EcSMS35_3423 - hypothetical protein 3285 39.17 -2 3504952..3505071 + 39 170681459 - EcSMS35_3424 - hypothetical protein 3286 53.05 0 3505118..3506689 + 523 170680919 garD EcSMS35_3425 - galactarate dehydratase 3287 43.97 -1 3507033..3507173 + 46 170681751 sohA EcSMS35_3426 - HtrA suppressor protein SohA 3288 44.30 -1 3507173..3507637 + 154 170682166 - EcSMS35_3427 - hypothetical protein 3289 52.47 0 3507692..3508501 - 269 170680176 - EcSMS35_3428 - DeoR family transcriptional regulator 3290 54.80 0 3508750..3510030 + 426 170680844 - EcSMS35_3429 - D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit 3291 50.84 0 3510053..3510526 + 157 170683585 agaV EcSMS35_3430 - PTS system, N-acetylgalactosamine-specific, IIB component 3292 56.28 +1 3510537..3511316 + 259 170684243 agaW EcSMS35_3431 - PTS system, N-acetylgalactosamine-specific, IIC component 3293 52.56 0 3511306..3512184 + 292 170683484 agaE EcSMS35_3432 - PTS system N-acetylgalactosamine-specific, IID component 3294 51.95 0 3512202..3512636 + 144 170684074 agaF EcSMS35_3433 - PTS system, mannose/sorbose-specific, IIA component 3295 57.92 +1 3512612..3513766 + 384 170681130 nagA1 EcSMS35_3434 - N-acetylglucosamine-6-phosphate deacetylase 3296 57.06 +1 3514117..3515271 + 384 170682634 - EcSMS35_3435 - AgaS family sugar isomerase 3297 52.50 0 3515284..3516144 + 286 170682643 agaY EcSMS35_3436 - tagatose-1,6-bisphosphate aldolase agaY 3298 44.23 -1 3516311..3516787 + 158 170683275 agaB EcSMS35_3437 - PTS system, D galactosamine-specific, IIB component 3299 51.24 0 3516826..3517629 + 267 170681846 agaC EcSMS35_3438 - PTS system, N-acetylgalactosamine-specific EIIC component 3300 49.12 0 3517619..3518410 + 263 170681996 agaD EcSMS35_3439 - PTS system, D-galactosamine-specific, IID component 3301 50.52 0 3518411..3519178 + 255 170681234 - EcSMS35_3440 - putative galactosamine-6-phosphate isomerase 3302 54.28 0 3519228..3520091 - 287 170681783 - EcSMS35_3441 - tetrapyrrole methylase family protein 3303 54.34 0 3520156..3522192 + 678 170679956 - EcSMS35_3442 - putative lipoprotein 3304 55.05 0 3522150..3522545 + 131 170680465 - EcSMS35_3443 - hypothetical protein 3305 49.75 0 3522565..3523155 + 196 170682125 diaA EcSMS35_3444 - DnaA initiator-associating protein DiaA 3306 53.82 0 3523165..3523740 + 191 170680506 - EcSMS35_3445 - phospholipid-binding domain-containing protein 3307 57.64 +1 3523853..3524893 - 346 170683334 - EcSMS35_3446 - putative permease 3308 55.35 0 3524966..3525601 - 211 170680214 - EcSMS35_3447 - NAD dependent epimerase/dehydratase family protein 3309 51.06 0 3525729..3526247 + 172 170683857 - EcSMS35_3449 - PfpI family intracellular peptidase 3310 53.83 0 3526227..3526670 - 147 170682320 - EcSMS35_3448 - hypothetical protein 3311 54.46 0 3526721..3527023 + 100 170681935 - EcSMS35_3451 - GIY-YIG catalytic domain-containing protein 3312 55.16 0 3527010..3527513 - 167 170682653 - EcSMS35_3450 - acetyltransferase 3313 51.05 0 3527507..3528031 - 174 170680098 - EcSMS35_3452 - sterol-binding protein 3314 34.21 -2 3528021..3528134 - 37 170681790 - EcSMS35_3453 - hypothetical protein 3315 57.33 +1 3528240..3529235 + 331 170683910 - EcSMS35_3454 - U32 family peptidase 50.50 MEAN 5.49 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.