IslandPathversion 1.0

IslandPath Analysis: Escherichia coli SMS-3-5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 50.50 STD DEV: 5.49
Escherichia coli SMS-3-5, complete genome - 1..5068389
4743 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2771	 58.08	+1	2938490..2939083	-	197	170682784	kpdB	EcSMS35_2864	-	4-hydroxybenzoate decarboxylase, subunit B
2772	 51.47	0	2939230..2939637	+	135	170683273	-	EcSMS35_2865	-	MarR family transcriptional regulator
2773	 52.17	0	2939757..2940749	-	330	170684160	rpoS	EcSMS35_2866	-	RNA polymerase sigma factor RpoS
2774	 52.54	0	2940812..2941951	-	379	170679671	nlpD	EcSMS35_2867	-	lipoprotein NlpD
2775	 53.75	0	2942091..2942717	-	208	170682160	pcm	EcSMS35_2868	-	protein-L-isoaspartate O-methyltransferase
2776	 54.69	0	2942711..2943478	-	255	170681369	surE	EcSMS35_2869	-	multifunctional protein SurE
2777	 52.19	0	2943453..2944502	-	349	170681051	truD	EcSMS35_2870	-	tRNA pseudouridine synthase D
2778	 55.00	0	2944499..2944978	-	159	170680373	ispF	EcSMS35_2871	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
2779	 55.27	0	2944978..2945688	-	236	170681257	ispD	EcSMS35_2872	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
2780	 51.60	0	2945707..2946018	-	103	170680593	ftsB	EcSMS35_2873	-	cell division protein FtsB
2781	 50.83	0	2946006..2946125	-	39	170682170	-	EcSMS35_2874	-	hypothetical protein
2782	 47.22	0	2946212..2946535	-	107	170681455	-	EcSMS35_2875	-	hypothetical protein
2783	 51.98	0	2946585..2947190	-	201	170683859	cysC	EcSMS35_2876	-	adenylylsulfate kinase
2784	 54.41	0	2947190..2948617	-	475	170683324	cysN	EcSMS35_2877	-	sulfate adenylyltransferase, subunit 1
2785	 53.69	0	2948619..2949527	-	302	170679929	cysD	EcSMS35_2878	-	sulfate adenylyltransferase, subunit 2
2786	 49.13	0	2949779..2950816	+	345	170683777	iap	EcSMS35_2879	-	alkaline phosphatase isozyme conversion peptidase
2787	 57.37	+1	2950813..2951124	+	103	170683268	-	EcSMS35_2880	-	hypothetical protein
2788	 57.02	+1	2951918..2952031	+	37	170682057	-	EcSMS35_2881	-	hypothetical protein
2789	 49.31	0	2952306..2952593	-	95	170684220	cas2	EcSMS35_2882	-	CRISPR-associated Cas2 family protein
2790	 51.62	0	2952596..2953519	-	307	170681830	cas1	EcSMS35_2883	-	CRISPR-associated Cas1 family protein
2791	 54.99	0	2953516..2954166	-	216	170681320	cse3	EcSMS35_2884	-	CRISPR-associated Cse3 family protein
2792	 54.75	0	2954148..2954894	-	248	170680474	cas5e	EcSMS35_2885	-	CRISPR-associated Cas5 family protein
2793	 50.57	0	2954905..2955960	-	351	170679971	cse4	EcSMS35_2886	-	CRISPR-associated Cse4 family protein
2794	 51.96	0	2955975..2956511	-	178	170680421	cse2	EcSMS35_2887	-	CRISPR-associated Cse2 family protein
2795	 49.65	0	2956508..2958070	-	520	170683207	cse1	EcSMS35_2888	-	CRISPR-associated Cse1 family protein
2796	 51.15	0	2958168..2960867	-	899	170680605	cas3	EcSMS35_2889	-	CRISPR-associated helicase Cas3
2797	 50.48	0	2961479..2962213	-	244	170680095	cysH	EcSMS35_2890	-	phosphoadenosine phosphosulfate reductase
2798	 55.87	0	2962287..2963999	-	570	170681318	cysI	EcSMS35_2891	-	sulfite reductase (NADPH) hemoprotein, beta-component
2799	 56.72	+1	2963999..2965798	-	599	170680548	cysJ	EcSMS35_2892	-	sulfite reductase [NADPH] flavoprotein, alpha-component
2800	 39.47	-2	2966011..2966124	-	37	170682745	-	EcSMS35_2893	-	hypothetical protein
2801	 49.59	0	2966117..2966479	+	120	170682185	queD	EcSMS35_2894	-	queuosine biosynthesis protein QueD
2802	 55.42	0	2966557..2967828	+	423	170683360	-	EcSMS35_2895	-	pyridine nucleotide-disulphide oxidoreductase family protein
2803	 52.87	0	2967819..2968079	+	86	170682567	-	EcSMS35_2896	-	putative ferredoxin
2804	 47.22	0	2968096..2968671	+	191	170679687	-	EcSMS35_2897	-	glycerol-3-phosphate responsive antiterminator
2805	 55.40	0	2968818..2969678	-	286	170682876	-	EcSMS35_2898	-	electron transfer flavoprotein
2806	 55.51	0	2969675..2970454	-	259	170680852	-	EcSMS35_2899	-	electron transfer flavoprotein
2807	 54.26	0	2970432..2971769	-	445	170681816	-	EcSMS35_2900	-	major facilitator family transporter
2808	 50.79	0	2971863..2973317	-	484	170679795	-	EcSMS35_2901	-	FAD binding domain-containing protein
2809	 45.29	0	2973387..2974172	-	261	170680420	-	EcSMS35_2902	-	short chain dehydrogenase/reductase family oxidoreductase
2810	 49.06	0	2974490..2975767	+	425	170683431	-	EcSMS35_2903	-	major facilitator family transporter
2811	 49.02	0	2975794..2977272	+	492	170679797	-	EcSMS35_2904	-	carbohydrate kinase, FGGY family protein
2812	 47.77	0	2977437..2978357	+	306	170682402	scrK	EcSMS35_2905	-	fructokinase
2813	 46.90	0	2978525..2980042	+	505	170682892	scrY	EcSMS35_2906	-	sucrose porin ScrY
2814	 46.46	0	2980103..2981473	+	456	170681405	scrA	EcSMS35_2907	-	PTS system sucrose-specific EIIBC component ScrA
2815	 48.50	0	2981479..2982882	+	467	170680697	scrB	EcSMS35_2908	-	beta-fructofuranosidase
2816	 47.22	0	2982908..2983915	+	335	170682803	scrR	EcSMS35_2909	-	sucrose operon repressor
2817	 51.79	0	2984001..2984672	-	223	170682101	-	EcSMS35_2910	-	hypothetical protein
2818	 35.09	-2	2984706..2984819	+	37	170681100	-	EcSMS35_2911	-	hypothetical protein
2819	 42.62	-1	2984845..2985447	+	200	170682799	-	EcSMS35_2912	-	LemA family protein
2820	 48.43	0	2985461..2986354	+	297	170680054	-	EcSMS35_2913	-	hypothetical protein
2821	 45.60	0	2986369..2987517	+	382	170681683	-	EcSMS35_2914	-	hypothetical protein
2822	 43.28	-1	2987511..2988395	+	294	170683146	-	EcSMS35_2915	-	hypothetical protein
2823	 53.88	0	2988512..2989840	+	442	170680259	-	EcSMS35_2916	-	IS4 transposase
2824	 50.50	0	2989895..2991193	-	432	170684207	eno	EcSMS35_2917	-	phosphopyruvate hydratase
2825	 51.95	0	2991280..2992917	-	545	170680423	pyrG	EcSMS35_2918	-	CTP synthase
2826	 50.88	0	2993145..2993936	-	263	170682107	-	EcSMS35_2919	-	MazG family protein
2827	 47.92	0	2994008..2994343	-	111	170683531	chpA	EcSMS35_2920	-	pemK protein 1
2828	 47.79	0	2994343..2994591	-	82	170682877	chpR	EcSMS35_2921	-	pemI protein 1
2829	 53.83	0	2994669..2996903	-	744	170682452	relA	EcSMS35_2922	-	GTP diphosphokinase
2830	 50.92	0	2996951..2998252	-	433	170681551	rumA	EcSMS35_2923	-	23S rRNA (uracil-5-)-methyltransferase RumA
2831	 49.69	0	2998309..3001065	+	918	170680902	barA	EcSMS35_2924	-	sensor histidine kinase/response regulator BarA
2832	 53.69	0	3001296..3002636	-	446	170680334	-	EcSMS35_2925	-	glucarate dehydratase
2833	 54.14	0	3002657..3003997	-	446	170679833	-	EcSMS35_2926	-	glucarate dehydratase
2834	 52.18	0	3003999..3005351	-	450	170684213	gudP	EcSMS35_2927	-	glucarate permease
2835	 47.62	0	3005446..3005571	-	41	170683781	-	EcSMS35_2928	-	hypothetical protein
2836	 41.86	-1	3005565..3005693	+	42	170681822	-	EcSMS35_2929	-	hypothetical protein
2837	 51.78	0	3005786..3006235	-	149	170679697	-	EcSMS35_2930	-	flavodoxin
2838	 54.53	0	3006253..3007035	-	260	170682843	truC	EcSMS35_2931	-	tRNA pseudouridine synthase C
2839	 52.73	0	3007035..3007364	-	109	170681308	-	EcSMS35_2932	-	hypothetical protein
2840	 47.99	0	3007986..3008531	-	181	170683510	-	EcSMS35_2933	-	syd protein
2841	 49.12	0	3008599..3009447	+	282	170684047	queF	EcSMS35_2934	-	queuine synthase
2842	 51.36	0	3009559..3010923	+	454	170680380	-	EcSMS35_2935	-	hypothetical protein
2843	 52.25	0	3011479..3012768	+	429	170683290	-	EcSMS35_2936	-	serine transporter family protein
2844	 54.31	0	3012826..3014193	+	455	170680778	sdaB	EcSMS35_2937	-	L-serine ammonia-lyase 2
2845	 52.65	0	3014304..3015059	+	251	170681600	xni	EcSMS35_2938	-	exodeoxyribonuclease-9
2846	 53.91	0	3015164..3016315	-	383	170682829	fucO	EcSMS35_2939	-	lactaldehyde reductase
2847	 49.54	0	3016340..3016987	-	215	170682130	fucA	EcSMS35_2940	-	L-fuculose phosphate aldolase
2848	 36.96	-2	3017177..3017314	+	45	170683834	-	EcSMS35_2941	-	hypothetical protein
2849	 47.23	0	3017534..3018850	+	438	170683163	fucP	EcSMS35_2942	-	L-fucose:H+ symporter permease
2850	 54.67	0	3018883..3020658	+	591	170682875	fucI	EcSMS35_2943	-	L-fucose isomerase
2851	 50.88	0	3020767..3022185	+	472	170682163	fucK	EcSMS35_2944	-	L-fuculokinase
2852	 48.46	0	3022187..3022609	+	140	170683884	fucU	EcSMS35_2945	-	fucose operon protein FucU
2853	 48.50	0	3022667..3023398	+	243	170683158	fucR	EcSMS35_2946	-	L-fucose operon activator
2854	 52.32	0	3023442..3024542	-	366	170680808	-	EcSMS35_2947	-	hypothetical protein
2855	 54.29	0	3024535..3024930	-	131	170684153	-	EcSMS35_2948	-	hypothetical protein
2856	 49.35	0	3024949..3025866	-	305	170681756	gcvA	EcSMS35_2949	-	glycine cleavage system transcriptional activator
2857	 46.49	0	3026218..3026445	-	75	170682370	-	EcSMS35_2950	-	putative lipoprotein
2858	 56.05	+1	3026637..3027842	+	401	170680672	csdA	EcSMS35_2951	-	cysteine desulfurase, catalytic subunit CsdA
2859	 55.41	0	3027842..3028285	+	147	170681430	csdE	EcSMS35_2952	-	cysteine desulfurase, sulfur acceptor subunit CsdE
2860	 54.43	0	3028336..3029136	-	266	170680315	-	EcSMS35_2953	-	ThiF family protein
2861	 53.09	0	3029219..3030286	-	355	170681128	mltA	EcSMS35_2954	-	membrane-bound lytic murein transglycosylase A
2862	 44.20	-1	3030901..3031848	-	315	170684118	-	EcSMS35_2958	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
2863	 43.72	-1	3031920..3032516	-	198	170680141	-	EcSMS35_2959	-	KpsF/GutQ family sugar isomerase
2864	 37.93	-2	3032519..3033694	-	391	170682367	-	EcSMS35_2960	-	aminotransferase, classes I and II
2865	 44.34	-1	3033694..3035274	-	526	170683282	-	EcSMS35_2961	-	PTS system, maltose and glucose-specific IIBC component family protein
2866	 34.18	-2	3035306..3036130	-	274	170680940	-	EcSMS35_2962	-	putative transcriptional antiterminator
2867	 32.68	-2	3036226..3036378	+	50	170681355	-	EcSMS35_2963	-	hypothetical protein
2868	 53.27	0	3036388..3037641	-	417	170681690	amiC1	EcSMS35_2964	-	N-acetylmuramoyl-L-alanine amidase AmiC
2869	 52.63	0	3037873..3039204	+	443	170680431	argA	EcSMS35_2965	-	amino-acid N-acetyltransferase
2870	 54.79	0	3039266..3041092	-	608	170683529	recD	EcSMS35_2966	-	exodeoxyribonuclease V, alpha subunit
50.50	MEAN

5.49	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.