version 1.0
Escherichia coli SMS-3-5, complete genome - 1..5068389 4743 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2603 53.37 0 2757158..2757646 - 162 170684046 iscR EcSMS35_2684 - iron-sulfur cluster assembly transcription factor IscR 2604 54.52 0 2757917..2758657 - 246 170683683 - EcSMS35_2685 - RNA methyltransferase 2605 54.60 0 2758776..2759579 + 267 170682874 suhB EcSMS35_2686 - inositol-1-monophosphatase 2606 49.36 0 2759724..2760578 + 284 170682318 - EcSMS35_2687 - hypothetical protein 2607 52.15 0 2760769..2762049 + 426 170683567 csiE EcSMS35_2689 - stationary phase inducible protein CsiE 2608 56.05 +1 2762041..2763180 - 379 170684196 hcaT EcSMS35_2688 - 3-phenylpropionic acid transporter 2609 50.00 0 2763340..2764233 - 297 170681286 hcaR EcSMS35_2690 - hca operon transcriptional activator 2610 53.45 0 2764366..2765727 + 453 170680180 hcaE EcSMS35_2691 - 3-phenylpropionate dioxygenase alpha subunit 2611 51.83 0 2765724..2766242 + 172 170679701 hcaF EcSMS35_2692 - 3-phenylpropionate dioxygenase beta subunit 2612 55.76 0 2766242..2766562 + 106 170683920 hcaC EcSMS35_2693 - 3-phenylpropionate dioxygenase ferredoxin subunit 2613 56.46 +1 2766559..2767371 + 270 170683398 hcaB EcSMS35_2694 - 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase 2614 54.61 0 2767381..2768583 + 400 170683500 hcaD EcSMS35_2695 - 3-phenylpropionate dioxygenase ferredoxin--NAD(+) reductase component 2615 49.65 0 2768680..2769102 + 140 170683033 - EcSMS35_2696 - putative inner membrane protein YphA 2616 55.10 0 2769150..2770022 - 290 170682346 - EcSMS35_2697 - aldose 1-epimerase family protein 2617 53.33 0 2770034..2771128 - 364 170681398 - EcSMS35_2698 - zinc-binding dehydrogenase family oxidoreductase 2618 55.26 0 2771161..2772159 - 332 170680743 - EcSMS35_2699 - putative sugar ABC transporter, permease protein 2619 55.69 0 2772184..2773695 - 503 170683588 - EcSMS35_2700 - putative sugar ABC transporter, ATP-binding protein 2620 46.14 0 2773718..2774701 - 327 170682923 - EcSMS35_2701 - putative sugar ABC transporter, periplasmic sugar-binding protein 2621 54.78 0 2774798..2778079 - 1093 170682243 - EcSMS35_2702 - TPR repeat-containing protein 2622 51.76 0 2778197..2779390 + 397 170681604 - EcSMS35_2703 - ROK family protein 2623 52.87 0 2779454..2780707 - 417 170680929 glyA EcSMS35_2704 - serine hydroxymethyltransferase 2624 52.90 0 2781035..2782225 + 396 170680268 hmp EcSMS35_2705 - flavohemoprotein 2625 50.15 0 2782270..2782608 - 112 170679611 glnB EcSMS35_2706 - nitrogen regulatory protein P-II 1 2626 54.76 0 2782669..2784003 - 444 170681075 - EcSMS35_2707 - sigma-54 dependent response regulator 2627 54.48 0 2783993..2784706 - 237 170680612 - EcSMS35_2708 - putative lipoprotein 2628 53.36 0 2784871..2786298 - 475 170680109 - EcSMS35_2709 - sensor histidine kinase 2629 56.69 +1 2786875..2790762 - 1295 170682234 purL EcSMS35_2710 - phosphoribosylformylglycinamidine synthase 2630 50.29 0 2791022..2792578 + 518 170681428 - EcSMS35_2712 - putative transglycosylase 2631 54.37 0 2792575..2793078 - 167 170682913 tadA EcSMS35_2711 - tRNA-specific adenosine deaminase 2632 53.14 0 2793136..2793771 - 211 170679764 yhfB EcSMS35_2713 - HAD hydrolase YhfB 2633 51.83 0 2793980..2794828 + 282 170680195 - EcSMS35_2714 - RpiR family transcriptional regulator 2634 44.21 -1 2794860..2795144 + 94 170683213 - EcSMS35_2715 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2635 50.39 0 2795839..2796219 - 126 170684119 acpS EcSMS35_2716 - holo-(acyl-carrier-protein) synthase 2636 55.33 0 2796219..2796950 - 243 170682415 pdxJ EcSMS35_2717 - pyridoxine 5'-phosphate synthase 2637 53.91 0 2796962..2797690 - 242 170681019 recO EcSMS35_2718 - DNA repair protein RecO 2638 52.32 0 2797702..2798607 - 301 170681506 era EcSMS35_2719 - GTP-binding protein Era 2639 51.10 0 2798604..2799284 - 226 170680897 rnc EcSMS35_2720 - ribonuclease III 2640 52.00 0 2799557..2800531 - 324 170680067 lepB EcSMS35_2721 - signal peptidase I 2641 53.61 0 2800547..2802346 - 599 170679646 lepA EcSMS35_2722 - GTP-binding protein LepA 2642 53.12 0 2802543..2803022 - 159 170684237 rseC EcSMS35_2723 - sigma-E factor regulatory protein RseC 2643 50.57 0 2803019..2803975 - 318 170683551 rseB EcSMS35_2724 - sigma-E factor regulatory protein RseB 2644 52.07 0 2803975..2804625 - 216 170682893 rseA EcSMS35_2725 - sigma-E factor negative regulatory protein 2645 48.78 0 2804658..2805233 - 191 170682217 rpoE EcSMS35_2726 - RNA polymerase sigma-E factor 2646 53.05 0 2805641..2807263 + 540 170681372 nadB EcSMS35_2728 - L-aspartate oxidase 2647 52.30 0 2807248..2807985 - 245 170679700 - EcSMS35_2727 - putative methyltransferase 2648 55.36 0 2808117..2809451 + 444 170684258 srmB EcSMS35_2729 - ATP-dependent RNA helicase SrmB 2649 49.09 0 2809484..2810365 - 293 170683897 - EcSMS35_2730 - LysR family transcriptional regulator 2650 50.51 0 2810468..2811055 + 195 170680022 - EcSMS35_2731 - LysE family translocator protein 2651 48.44 0 2811110..2811493 - 127 170680667 grcA EcSMS35_2732 - autonomous glycyl radical cofactor 2652 52.90 0 2811798..2812487 + 229 170683958 ung EcSMS35_2733 - uracil-DNA glycosylase 2653 56.36 +1 2812535..2813572 - 345 170683534 - EcSMS35_2734 - RNA methyltransferase 2654 49.05 0 2813779..2814198 + 139 170680235 - EcSMS35_2735 - putative thioredoxin 2655 51.93 0 2814267..2814965 + 232 170679752 - EcSMS35_2736 - DTW domain-containing protein 2656 54.27 0 2814997..2817657 + 886 170681301 - EcSMS35_2737 - CoA-binding domain/acetyltransferase domain-containing protein 2657 48.89 0 2817771..2819126 + 451 170680781 pssA EcSMS35_2738 - CDP-diacylglycerol--serine O-phosphatidyltransferase 2658 56.04 +1 2819223..2819495 + 90 170682656 - EcSMS35_2740 - putative lipoprotein 2659 48.96 0 2819492..2820790 - 432 170682366 kgtP EcSMS35_2739 - alpha-ketoglutarate permease 2660 51.44 0 2826569..2829142 - 857 170683980 clpB EcSMS35_2746 - ATP-dependent chaperone protein ClpB 2661 54.23 0 2829272..2830003 - 243 170684200 - EcSMS35_2747 - hypothetical protein 2662 52.50 0 2830000..2830980 - 326 170683711 rluD EcSMS35_2748 - ribosomal large subunit pseudouridine synthase D 2663 50.81 0 2831115..2831852 + 245 170682905 - EcSMS35_2749 - outer membrane assembly lipoprotein YfiO 2664 46.20 0 2832123..2832464 + 113 170682385 - EcSMS35_2750 - ribosomal subunit interface protein 2665 48.58 0 2832714..2833874 + 386 170681627 pheA EcSMS35_2751 - chorismate mutase/prephenate dehydratase 2666 52.23 0 2833917..2835038 - 373 170679824 tyrA EcSMS35_2752 - chorismate mutase/prephenate dehydrogenase 2667 51.54 0 2835049..2836119 - 356 170683035 aroF EcSMS35_2753 - 3-deoxy-7-phosphoheptulonate synthase, Tyr-sensitive 2668 45.08 0 2836329..2836694 + 121 170680740 - EcSMS35_2754 - putative lipoprotein 2669 44.70 -1 2836844..2837362 + 172 170682610 - EcSMS35_2755 - hypothetical protein 2670 48.28 0 2837355..2838578 + 407 170683267 - EcSMS35_2756 - GGDEF domain-containing protein 2671 51.14 0 2838594..2839076 + 160 170681549 - EcSMS35_2757 - OmpA family protein 2672 48.28 0 2839153..2839500 - 115 170682299 rplS EcSMS35_2758 - ribosomal protein L19 2673 53.52 0 2839542..2840309 - 255 170680491 trmD EcSMS35_2759 - tRNA (guanine-N1)-methyltransferase 2674 48.55 0 2840340..2840891 - 183 170681223 rimM EcSMS35_2760 - 16S rRNA processing protein RimM 2675 51.41 0 2840907..2841155 - 82 170682475 rpsP EcSMS35_2761 - ribosomal protein S16 2676 54.11 0 2841292..2842653 - 453 170684039 ffh EcSMS35_2762 - signal recognition particle protein 2677 52.13 0 2842745..2843611 + 288 170681191 - EcSMS35_2763 - putative cytochrome C assembly protein 2678 50.91 0 2843656..2844918 + 420 170681983 - EcSMS35_2764 - CBS/transporter associated domain-containing protein 2679 42.74 -1 2845042..2845647 + 201 170681847 - EcSMS35_2765 - hypothetical protein 2680 50.93 0 2845682..2846272 - 196 170681212 grpE EcSMS35_2766 - co-chaperone GrpE 2681 50.06 0 2846395..2847273 + 292 170679880 ppnK EcSMS35_2767 - NAD(+) kinase 2682 51.99 0 2847359..2849020 + 553 170683348 recN EcSMS35_2768 - DNA repair protein RecN 2683 50.00 0 2849169..2849510 + 113 170680255 - EcSMS35_2769 - SmpA/OmlA family lipoprotein 2684 51.20 0 2849572..2849862 - 96 170681237 - EcSMS35_2770 - RnfH family protein 2685 47.17 0 2849852..2850328 - 158 170683083 - EcSMS35_2771 - polyketide cyclase/dehydrase family protein 2686 51.55 0 2850460..2850942 + 160 170679596 smpB EcSMS35_2772 - SsrA-binding protein 2687 49.72 0 2851680..2856377 - 1565 170679851 - EcSMS35_2773 - hypothetical protein 2688 46.67 0 2856313..2856432 - 39 170681339 - EcSMS35_2774 - hypothetical protein 2689 36.67 -2 2857184..2857933 - 249 170680843 - EcSMS35_2775 - hypothetical protein 2690 37.95 -2 2860012..2862264 + 750 170681220 - EcSMS35_2778 - alpha amylase family protein 2691 53.37 0 2862601..2863578 + 325 170682703 - EcSMS35_2779 - protein CsiD 2692 57.05 +1 2863598..2864866 + 422 170682247 - EcSMS35_2780 - FAD dependent oxidoreductase 2693 57.49 +1 2864889..2866337 + 482 170679622 gabD EcSMS35_2781 - succinate-semialdehyde dehydrogenase (NAD(P)(+)) 2694 59.80 +1 2866351..2867631 + 426 170683877 gabT2 EcSMS35_2782 - 4-aminobutyrate transaminase 2695 51.25 0 2867868..2869268 + 466 170680659 gabP EcSMS35_2783 - gamma-aminobutyrate permease 2696 53.70 0 2869289..2869951 + 220 170683260 csiR EcSMS35_2784 - gab operon transcriptional repressor CsiR 2697 49.11 0 2869952..2870401 - 149 170681151 - EcSMS35_2785 - phospholipid-binding protein 2698 50.94 0 2870485..2870643 - 52 170681644 - EcSMS35_2786 - hypothetical protein 2699 53.00 0 2870826..2871125 + 99 170681146 - EcSMS35_2787 - ArsR family transcriptional regulator 2700 46.10 0 2871135..2871659 + 174 170681672 - EcSMS35_2788 - putative inner membrane protein 2701 49.38 0 2871706..2872110 - 134 170679595 stpA EcSMS35_2789 - H-NS histone family protein StpA 2702 49.11 0 2872778..2873227 + 149 170680685 - EcSMS35_2790 - hypothetical protein 50.50 MEAN 5.49 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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