version 1.0
Escherichia coli SMS-3-5, complete genome - 1..5068389 4743 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2201 57.58 +1 2292197..2292328 + 43 170684057 - EcSMS35_2270 - hypothetical protein 2202 47.71 0 2292408..2292560 + 50 170680531 - EcSMS35_2271 - hypothetical protein 2203 52.16 0 2292586..2294205 + 539 170679893 - EcSMS35_2272 - ISL3 family transposase 2204 44.86 -1 2295950..2296513 - 187 170682560 - EcSMS35_2274 - hypothetical protein 2205 36.35 -2 2297723..2299546 - 607 170682832 - EcSMS35_2275 - hypothetical protein 2206 43.10 -1 2299911..2301476 + 521 170682431 - EcSMS35_2276 - hypothetical protein 2207 48.64 0 2301700..2302908 - 402 170680457 - EcSMS35_2277 - phage integrase family site specific recombinase 2208 52.83 0 2303366..2305642 - 758 170679955 clpA EcSMS35_2278 - ATP-dependent Clp protease ATP-binding subunit ClpA 2209 45.17 0 2305673..2305993 - 106 170683903 clpS EcSMS35_2279 - ATP-dependent Clp protease adaptor protein ClpS 2210 48.44 0 2306316..2306540 + 74 170683368 cspD EcSMS35_2280 - cold shock domain-containing protein CspD 2211 54.13 0 2306613..2308559 - 648 170683653 macB EcSMS35_2281 - macrolide-specific ABC-type efflux carrier protein MacB 2212 53.41 0 2308556..2309671 - 371 170683052 macA EcSMS35_2282 - macrolide-specific efflux protein MacA 2213 49.95 0 2309786..2310778 + 330 170680310 - EcSMS35_2284 - hypothetical protein 2214 53.16 0 2310775..2312433 - 552 170682448 - EcSMS35_2283 - hypothetical protein 2215 52.44 0 2312859..2313554 + 231 170684199 aqpZ EcSMS35_2285 - aquaporin Z 2216 49.32 0 2314068..2315093 - 341 170682362 - EcSMS35_2286 - IS110 family transposase 2217 53.16 0 2315324..2316271 - 315 170680883 dusC EcSMS35_2287 - tRNA-dihydrouridine synthase C 2218 49.12 0 2316510..2316908 + 132 170681362 - EcSMS35_2288 - LrgA family protein 2219 53.02 0 2316905..2317600 + 231 170679809 - EcSMS35_2289 - LrgB family protein 2220 54.35 0 2317730..2318614 + 294 170680352 cdd EcSMS35_2290 - cytidine deaminase 2221 48.47 0 2318764..2319483 + 239 170683493 sanA EcSMS35_2291 - protein SanA 2222 43.33 -1 2319486..2319725 + 79 170684176 - EcSMS35_2292 - hypothetical protein 2223 51.33 0 2319919..2321157 + 412 170683988 - EcSMS35_2293 - pyridine nucleotide-disulfide oxidoreductase 2224 50.57 0 2321151..2322386 + 411 170682869 - EcSMS35_2294 - dihydroorotate dehydrogenase family protein 2225 50.15 0 2322457..2323467 - 336 170680415 mglC EcSMS35_2295 - galactose ABC transporter, permease protein 2226 45.04 0 2323483..2325003 - 506 170679772 mglA EcSMS35_2296 - galactose ABC transporter, ATP-binding protein 2227 51.15 0 2325064..2326062 - 332 170680313 mglB EcSMS35_2297 - galactose ABC transporter, periplasmic galactose-binding protein 2228 51.68 0 2326342..2327382 - 346 170679819 galS EcSMS35_2298 - transcriptional regulator GalS 2229 53.97 0 2327524..2328681 - 385 170681337 - EcSMS35_2299 - hypothetical protein 2230 50.82 0 2328698..2329366 - 222 170680773 folE EcSMS35_2300 - GTP cyclohydrolase I 2231 54.96 0 2329623..2330459 + 278 170682901 fghA1 EcSMS35_2301 - S-formylglutathione hydrolase 2232 52.96 0 2330491..2332416 - 641 170682371 cirA EcSMS35_2302 - colicin I receptor 2233 53.40 0 2332774..2334243 - 489 170679799 lysP EcSMS35_2303 - lysine-specific permease 2234 53.97 0 2334448..2335329 - 293 170682677 - EcSMS35_2304 - LysR family transcriptional regulator 2235 52.76 0 2335428..2336477 + 349 170681096 - EcSMS35_2305 - hypothetical protein 2236 52.21 0 2336551..2337408 + 285 170681734 nfo EcSMS35_2306 - endonuclease 4 2237 51.79 0 2337411..2338499 + 362 170683507 - EcSMS35_2307 - PfkB family kinase 2238 51.08 0 2338555..2339805 - 416 170684054 - EcSMS35_2308 - NupC family nucleoside transporter 2239 51.70 0 2339905..2340846 - 313 170683370 - EcSMS35_2309 - inosine-uridine preferring nucleoside hydrolase family protein 2240 43.35 -1 2340976..2341674 + 232 170683945 nsr EcSMS35_2310 - regulatory protein Nsr 2241 50.76 0 2341742..2342992 - 416 170681919 - EcSMS35_2311 - NupC family nucleoside transporter 2242 48.56 0 2343086..2344024 - 312 170682601 - EcSMS35_2312 - indigoidine synthase A like protein 2243 47.13 0 2344012..2344953 - 313 170680599 - EcSMS35_2313 - kinase, pfkB family protein 2244 56.03 +1 2345377..2347068 - 563 170681268 fruA EcSMS35_2314 - PTS system, fructose-specific, IIBC component 2245 53.89 0 2347085..2348023 - 312 170681800 fruK EcSMS35_2315 - 1-phosphofructokinase 2246 55.53 0 2348023..2349153 - 376 170683388 fruB EcSMS35_2316 - PTS system fructose-specific phosphotransferase enzyme IIA component 2247 40.15 -1 2349319..2349450 + 43 170683990 - EcSMS35_2317 - hypothetical protein 2248 52.79 0 2349521..2350702 + 393 170680537 setB EcSMS35_2319 - sugar efflux transporter B 2249 55.69 0 2350699..2350953 - 84 170679926 - EcSMS35_2318 - hypothetical protein 2250 49.56 0 2351108..2351680 + 190 170681704 - EcSMS35_2320 - elongation factor P family protein 2251 51.87 0 2351903..2353369 + 488 170680151 - EcSMS35_2321 - mannitol dehydrogenase family protein 2252 54.61 0 2353487..2354473 + 328 170681990 - EcSMS35_2322 - CobW/P47K family protein 2253 43.70 -1 2354512..2355225 + 237 170682623 - EcSMS35_2323 - PAP2 family protein 2254 47.27 0 2355637..2356203 + 188 170681203 - EcSMS35_2324 - NlpC/P60 family protein 2255 49.78 0 2356384..2357940 + 518 170681845 - EcSMS35_2325 - putative cyclic diguanylate phosphodiesterase 2256 50.63 0 2358022..2359836 + 604 170681154 - EcSMS35_2326 - ABC transporter, periplasmic solute-binding protein 2257 51.69 0 2359837..2360931 + 364 170681691 - EcSMS35_2327 - ABC transporter, permease protein 2258 53.51 0 2360931..2361956 + 341 170680077 - EcSMS35_2328 - ABC transporter, permease protein 2259 51.45 0 2361958..2363547 + 529 170680600 - EcSMS35_2329 - ABC transporter, ATP-binding protein 2260 49.28 0 2363551..2363895 - 114 170682649 - EcSMS35_2330 - hypothetical protein 2261 53.15 0 2364229..2365419 - 396 170683634 bcr EcSMS35_2331 - bicyclomycin resistance protein 2262 53.30 0 2365447..2366142 - 231 170681582 rsuA EcSMS35_2332 - ribosomal small subunit pseudouridine synthase A 2263 53.15 0 2366292..2368052 + 586 170682105 - EcSMS35_2333 - putative helicase 2264 50.18 0 2368177..2368461 + 94 170680132 rplY EcSMS35_2334 - ribosomal L25p family protein 2265 52.38 0 2368600..2369607 - 335 170680719 ndpA EcSMS35_2335 - nucleoid-associated protein NdpA 2266 38.46 -2 2369652..2369768 - 38 170682652 - EcSMS35_2336 - hypothetical protein 2267 50.00 0 2369789..2370016 + 75 170683474 - EcSMS35_2337 - hypothetical protein 2268 52.07 0 2370036..2371796 + 586 170681591 - EcSMS35_2338 - sulfatase family protein 2269 52.78 0 2374961..2375608 + 215 170679777 narP EcSMS35_2341 - nitrate/nitrite response regulator NarP 2270 54.42 0 2375643..2376695 - 350 170680448 - EcSMS35_2342 - cytochrome c-type biogenesis family protein 2271 55.20 0 2376692..2377249 - 185 170684059 dsbE EcSMS35_2343 - thiol:disulfide interchange protein DsbE 2272 57.41 +1 2377246..2379189 - 647 170679920 ccmF EcSMS35_2344 - cytochrome c-type biogenesis protein CcmF 2273 53.33 0 2379186..2379665 - 159 170680024 ccmE EcSMS35_2345 - cytochrome c-type biogenesis protein CcmE 2274 58.10 +1 2379662..2379871 - 69 170681750 ccmD EcSMS35_2346 - heme exporter protein D 2275 55.69 0 2379868..2380605 - 245 170683112 ccmC EcSMS35_2347 - heme exporter protein C 2276 56.71 +1 2380647..2381309 - 220 170680661 ccmB EcSMS35_2348 - heme exporter protein CcmB 2277 55.83 0 2381306..2381923 - 205 170682203 ccmA EcSMS35_2349 - heme ABC exporter, ATP-binding protein CcmA 2278 51.58 0 2381942..2382544 - 200 170683912 napC EcSMS35_2350 - cytochrome c-type protein napC 2279 56.44 +1 2382554..2383003 - 149 170681658 napB EcSMS35_2351 - periplasmic nitrate reductase, diheme cytochrome c subunit 2280 55.79 0 2383000..2383863 - 287 170681157 napH EcSMS35_2352 - periplasmic nitrate reductase, NapH 2281 59.34 +1 2383850..2384545 - 231 170680735 napG EcSMS35_2353 - periplasmic nitrate reductase, NapG 2282 55.89 0 2384552..2387038 - 828 170679943 napA EcSMS35_2354 - periplasmic nitrate reductase, large subunit 2283 54.17 0 2387035..2387298 - 87 170683051 napD EcSMS35_2355 - NapD protein 2284 54.34 0 2387288..2387782 - 164 170682644 napF EcSMS35_2356 - ferredoxin-type protein NapF 2285 40.00 -1 2387891..2388055 + 54 170680170 - EcSMS35_2357 - hypothetical protein 2286 49.90 0 2388190..2388678 + 162 170679765 eco EcSMS35_2358 - ecotin 2287 54.22 0 2388828..2390474 - 548 170684210 mqo EcSMS35_2359 - malate dehydrogenase (acceptor) 2288 53.35 0 2390692..2392335 - 547 170683689 - EcSMS35_2360 - ABC transporter ATP-binding protein 2289 53.00 0 2392411..2393061 - 216 170682238 alkB EcSMS35_2361 - alkylated DNA repair protein AlkB 2290 57.18 +1 2393061..2394125 - 354 170684032 ada EcSMS35_2362 - regulatory protein Ada 2291 53.69 0 2394199..2395254 - 351 170681131 apbE EcSMS35_2363 - thiamine biosynthesis lipoprotein ApbE 2292 48.68 0 2395366..2396460 - 364 170680935 ompC EcSMS35_2364 - outer membrane protein C 2293 49.72 0 2397199..2399871 + 890 170683966 yojN EcSMS35_2365 - sensor histidine kinase YojN 2294 48.08 0 2399888..2400538 + 216 170682257 rcsB EcSMS35_2366 - capsular synthesis regulator component B 2295 50.74 0 2400624..2403473 - 949 170679899 rcsC EcSMS35_2367 - sensor histidine kinase/response regulator RcsC 2296 48.88 0 2403640..2405466 + 608 170680522 atoS EcSMS35_2368 - sensory box histidine kinase AtoS 2297 49.42 0 2405463..2406848 + 461 170681202 atoC EcSMS35_2369 - sigma-54 dependent response regulator AtoC 2298 53.54 0 2407044..2407706 + 220 170681854 pcaI EcSMS35_2370 - 3-oxoadipate CoA-transferase, subunit A 2299 53.15 0 2407706..2408356 + 216 170682047 - EcSMS35_2371 - 3-oxoacid CoA-transferase, B subunit 2300 53.06 0 2408353..2409675 + 440 170682719 - EcSMS35_2372 - putative short chain fatty acid transporter 50.50 MEAN 5.49 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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