version 1.0
Escherichia coli SMS-3-5, complete genome - 1..5068389 4743 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1740 49.01 0 1822996..1823901 - 301 170683200 ompG EcSMS35_1803 - monomeric porin OmpG 1741 49.40 0 1823946..1825028 - 360 170680817 - EcSMS35_1804 - sugar ABC transporter, ATP-binding protein 1742 55.61 0 1825042..1825701 - 219 170682001 pgmB EcSMS35_1805 - beta-phosphoglucomutase 1743 53.79 0 1825698..1827965 - 755 170682507 - EcSMS35_1806 - glycosy hydrolase family protein 1744 55.46 0 1827962..1829005 - 347 170684205 - EcSMS35_1807 - gfo/idh/mocA family protein 1745 52.34 0 1829027..1829815 - 262 170683456 - EcSMS35_1808 - AP endonuclease 1746 55.94 0 1829833..1830885 - 350 170681445 - EcSMS35_1809 - zinc-binding dehydrogenase family oxidoreductase 1747 52.79 0 1830916..1831758 - 280 170682092 - EcSMS35_1810 - putative sugar ABC transporter, permease protein 1748 53.40 0 1831745..1832626 - 293 170682754 - EcSMS35_1811 - putative sugar ABC transporter, permease protein 1749 51.35 0 1832647..1833939 - 430 170683434 - EcSMS35_1812 - putative sugar ABC transporter, periplasmic sugar-binding protein 1750 44.23 -1 1833953..1835632 - 559 170679871 - EcSMS35_1813 - alpha amylase family protein 1751 51.43 0 1835846..1836160 - 104 170682062 pspE EcSMS35_1814 - phage shock protein E 1752 55.86 0 1836235..1836456 - 73 170683517 pspD EcSMS35_1815 - phage shock protein PspD 1753 49.72 0 1836465..1836824 - 119 170684285 pspC EcSMS35_1816 - phage shock protein C 1754 48.00 0 1836824..1837048 - 74 170682840 pspB EcSMS35_1817 - phage shock protein B 1755 49.63 0 1837102..1837770 - 222 170680978 pspA EcSMS35_1818 - phage shock protein A 1756 51.64 0 1837937..1838914 + 325 170684159 pspF EcSMS35_1819 - sigma-54 dependent transcriptional regulator PspF 1757 57.58 +1 1839045..1840310 - 421 170682308 gabT1 EcSMS35_1820 - 4-aminobutyrate transaminase 1758 58.47 +1 1840348..1841628 - 426 170679683 puuB EcSMS35_1821 - gamma-glutamylputrescine oxidoreductase 1759 58.00 +1 1841630..1843117 - 495 170680173 puuC EcSMS35_1822 - gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase 1760 50.72 0 1843267..1843824 - 185 170680966 puuR EcSMS35_1823 - transcriptional regulator PuuR 1761 53.52 0 1843851..1844603 - 250 170679609 puuD EcSMS35_1824 - gamma-glutamyl-gamma-aminobutyrate hydrolase 1762 53.56 0 1844827..1846245 + 472 170682225 puuA EcSMS35_1825 - glutamate--putrescine ligase 1763 53.61 0 1846548..1847933 + 461 170682974 - EcSMS35_1826 - amino acid permease 1764 48.78 0 1848067..1848312 + 81 170683601 - EcSMS35_1827 - hypothetical protein 1765 54.14 0 1848649..1850268 + 539 170684301 sapA EcSMS35_1828 - peptide ABC transporter, periplasmic peptide-binding protein 1766 50.62 0 1850265..1851230 + 321 170683242 sapB EcSMS35_1829 - peptide ABC transporter, permease protein SapB 1767 57.13 +1 1851217..1852107 + 296 170684277 sapC EcSMS35_1830 - peptide ABC transporter, permease protein SapC 1768 51.06 0 1852107..1853099 + 330 170679617 sapD EcSMS35_1831 - peptide ABC transporter, ATP-binding protein SapD 1769 51.55 0 1853101..1853907 + 268 170680270 sapF EcSMS35_1832 - peptide transport system, ATP-binding protein SapF 1770 49.48 0 1853956..1855119 - 387 170680921 eefD EcSMS35_1833 - multidrug efflux transport protein EefD 1771 53.78 0 1855128..1856501 - 457 170681888 eefC EcSMS35_1834 - multidrug efflux outer membrane protein EefC 1772 51.93 0 1856505..1859612 - 1035 170683789 eefB EcSMS35_1835 - multidrug efflux transport protein EefB 1773 51.52 0 1859612..1860733 - 373 170683115 eefA EcSMS35_1836 - multidrug efflux transport protein EefA 1774 47.97 0 1860882..1861448 - 188 170681981 eefR EcSMS35_1837 - transcriptional regulator EefR 1775 42.55 -1 1861624..1861764 - 46 170683953 - EcSMS35_1838 - hypothetical protein 1776 53.74 0 1861926..1862714 + 262 170680950 fabI EcSMS35_1839 - enoyl-(acyl-carrier-protein) reductase (NADH) 1777 50.53 0 1862859..1863986 + 375 170682969 - EcSMS35_1840 - hypothetical protein 1778 53.39 0 1864054..1865988 + 644 170681733 rnb EcSMS35_1841 - exoribonuclease II 1779 48.54 0 1866223..1868208 + 661 170681077 - EcSMS35_1842 - sensory box-containing diguanylate cyclase/cyclic diguanylate phosphodiesterase 1780 47.70 0 1868356..1868529 + 57 170680708 - EcSMS35_1843 - hypothetical protein 1781 49.33 0 1868619..1869368 + 249 170683876 - EcSMS35_1844 - DeoR family transcriptional regulator 1782 52.51 0 1869637..1869855 + 72 170681513 - EcSMS35_1845 - osmotically inducible lipoprotein B 1783 50.30 0 1869981..1870310 - 109 170680982 - EcSMS35_1846 - putative translation initation factor SUI1 1784 53.25 0 1870307..1871044 - 245 170680162 pyrF EcSMS35_1847 - orotidine 5'-phosphate decarboxylase 1785 48.37 0 1871060..1871212 + 50 170679727 - EcSMS35_1848 - hypothetical protein 1786 52.31 0 1871236..1872405 - 389 170683676 - EcSMS35_1849 - TPR repeat-containing protein 1787 49.84 0 1872412..1872720 - 102 170680512 - EcSMS35_1850 - hypothetical protein 1788 49.93 0 1872869..1873633 - 254 170682357 pgpB EcSMS35_1851 - phosphatidylglycerophosphatase B 1789 49.92 0 1873803..1874393 + 196 170683390 ribA EcSMS35_1852 - GTP cyclohydrolase II 1790 52.88 0 1874457..1877132 - 891 170681003 acnA EcSMS35_1853 - aconitate hydratase 1 1791 45.24 0 1877452..1877619 - 55 170681124 - EcSMS35_1854 - hypothetical protein 1792 48.84 0 1877622..1877750 - 42 170680282 - EcSMS35_1855 - hypothetical protein 1793 48.92 0 1878081..1879055 - 324 170679623 cysB EcSMS35_1856 - HTH-type transcriptional regulator CysB 1794 51.66 0 1879264..1881861 - 865 170682590 topA EcSMS35_1857 - DNA topoisomerase I 1795 47.62 0 1882241..1882492 + 83 170681925 - EcSMS35_1858 - hypothetical protein 1796 50.67 0 1882528..1883577 - 349 170682481 sohB EcSMS35_1859 - S49 family peptidase 1797 52.17 0 1883797..1884555 + 252 170681806 - EcSMS35_1860 - short chain dehydrogenase/reductase family oxidoreductase 1798 50.08 0 1884552..1885142 + 196 170680960 btuR EcSMS35_1861 - cob(I)yrinic acid a,c-diamide adenosyltransferase 1799 34.95 -2 1885195..1885503 - 102 170680559 - EcSMS35_1862 - hypothetical protein 1800 37.82 -2 1885514..1886515 - 333 170679656 - EcSMS35_1863 - putative lipoprotein 1801 53.88 0 1886685..1887560 - 291 170682451 rluB EcSMS35_1864 - ribosomal large subunit pseudouridine synthase B 1802 47.15 0 1887771..1889666 - 631 170681982 - EcSMS35_1865 - hypothetical protein 1803 49.16 0 1889694..1890350 - 218 170681810 - EcSMS35_1866 - Sua5/YciO/YrdC/YwlC family protein 1804 53.97 0 1890311..1891192 - 293 170681023 - EcSMS35_1867 - putative phosphoesterase 1805 54.06 0 1891466..1893028 + 520 170680165 trpE EcSMS35_1868 - anthranilate synthase, component I 1806 56.20 +1 1893028..1894623 + 531 170679698 trpD EcSMS35_1869 - anthranilate synthase, component II 1807 52.64 0 1894624..1895985 + 453 170683763 trpC EcSMS35_1870 - tryptophan biosynthesis protein trpCF 1808 54.61 0 1895997..1897190 + 397 170683411 trpB EcSMS35_1871 - tryptophan synthase, beta subunit 1809 55.02 0 1897190..1897996 + 268 170682783 trpA EcSMS35_1872 - tryptophan synthase, alpha subunit 1810 50.00 0 1898377..1898556 + 59 170681776 - EcSMS35_1873 - hypothetical protein 1811 41.57 -1 1898621..1899142 + 173 170680983 yciF EcSMS35_1874 - YciF protein 1812 41.94 -1 1899415..1899693 + 92 170681561 - EcSMS35_1875 - hypothetical protein 1813 50.55 0 1899753..1900391 - 212 170682349 ompW EcSMS35_1876 - outer membrane protein W 1814 48.66 0 1900746..1901489 + 247 170684316 - EcSMS35_1877 - hypothetical protein 1815 46.67 0 1901519..1902058 + 179 170680207 ispZ EcSMS35_1878 - intracellular septation protein A 1816 49.12 0 1902163..1902561 + 132 170680833 yciA EcSMS35_1879 - acyl-CoA thioesterase YciA 1817 53.69 0 1902601..1903332 - 243 170681605 tonB EcSMS35_1880 - outer membrane receptor-mediated transport energizer protein TonB 1818 49.16 0 1903541..1903837 + 98 170682147 - EcSMS35_1881 - YciL domain-containing protein 1819 48.06 0 1903990..1904247 + 85 170682975 - EcSMS35_1882 - hypothetical protein 1820 32.50 -2 1904356..1906149 + 597 170683822 - EcSMS35_1884 - sulfatase family protein 1821 42.83 -1 1906146..1906745 - 199 170682453 - EcSMS35_1883 - hypothetical protein 1822 47.19 0 1906891..1907157 - 88 170680068 - EcSMS35_1885 - hypothetical protein 1823 53.16 0 1907391..1907738 + 115 170680737 - EcSMS35_1886 - IS3 family transposase 1824 50.61 0 1907782..1908192 + 136 170681071 - EcSMS35_1887 - IS2 transposase orfA 1825 54.97 0 1908150..1909055 + 301 170680938 - EcSMS35_1888 - IS2 transposase orfB 1826 50.19 0 1909030..1909569 + 179 170682061 - EcSMS35_1889 - IS911 transposase orfB 1827 42.51 -1 1910255..1911463 + 402 170682593 kch EcSMS35_1890 - potassium channel protein kch 1828 51.47 0 1911834..1913294 + 486 170683378 cls EcSMS35_1891 - cardiolipin synthetase 1829 47.88 0 1913329..1913658 + 109 170683928 - EcSMS35_1892 - hypothetical protein 1830 52.14 0 1913711..1914715 - 334 170680026 oppF EcSMS35_1893 - oligopeptide ABC transporter, ATP-binding protein OppF 1831 51.97 0 1914712..1915725 - 337 170684293 oppD EcSMS35_1894 - oligopeptide ABC transporter, ATP-binding protein OppD 1832 52.98 0 1915737..1916642 - 301 170683469 oppC EcSMS35_1895 - oligopeptide ABC transporter, permease protein OppC 1833 46.15 0 1916660..1917580 - 306 170681715 oppB EcSMS35_1896 - oligopeptide ABC transporter, permease protein OppB 1834 47.23 0 1917666..1919342 - 558 170681304 oppA EcSMS35_1897 - oligopeptide ABC transporter, periplasmic oligopeptide-binding protein 1835 33.00 -2 1919581..1919877 + 98 170682343 - EcSMS35_1899 - hypothetical protein 1836 33.33 -2 1919853..1920008 - 51 170682771 - EcSMS35_1898 - hypothetical protein 1837 47.69 0 1920035..1920682 - 215 170681952 - EcSMS35_1900 - MarC family integral membrane protein 1838 50.41 0 1921159..1923834 + 891 170683946 adhE EcSMS35_1901 - aldehyde-alcohol dehydrogenase 1839 43.04 -1 1924137..1924754 - 205 170680630 tdk EcSMS35_1902 - thymidine kinase 50.50 MEAN 5.49 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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