version 1.0
Escherichia coli SMS-3-5, complete genome - 1..5068389 4743 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1524 51.02 0 1572738..1573913 - 391 170682319 manA EcSMS35_1586 - mannose-6-phosphate isomerase, class I 1525 50.88 0 1574112..1575758 + 548 170682150 fumA EcSMS35_1587 - fumarate hydratase 1526 53.56 0 1575901..1577304 + 467 170681319 fumC EcSMS35_1589 - fumarate hydratase 1527 50.00 0 1577301..1578242 - 313 170680500 tus EcSMS35_1588 - DNA replication terminus site-binding protein 1528 50.61 0 1578306..1579607 - 433 170682743 rstB EcSMS35_1590 - sensor histidine kinase RstB 1529 49.72 0 1579611..1580330 - 239 170683236 rstA EcSMS35_1591 - transcriptional regulatory protein RstA 1530 47.62 0 1580459..1580794 + 111 170680025 - EcSMS35_1593 - hypothetical protein 1531 50.21 0 1580791..1581513 - 240 170683762 - EcSMS35_1592 - short chain dehydrogenase/reductase family oxidoreductase 1532 53.36 0 1581550..1582932 - 460 170680556 arcD EcSMS35_1594 - arginine/ornithine antiporter 1533 51.11 0 1583118..1584062 - 314 170681099 ydgH EcSMS35_1595 - YdgH protein 1534 52.51 0 1584587..1586119 + 510 170682207 pntA EcSMS35_1596 - NAD(P) transhydrogenase, alpha subunit 1535 52.12 0 1586130..1587518 + 462 170682723 - EcSMS35_1597 - NAD(P) transhydrogenase, beta subunit 1536 49.76 0 1587543..1588577 - 344 170683134 - EcSMS35_1598 - PerM family permease 1537 42.90 -1 1588989..1589354 + 121 170683606 mdtJ EcSMS35_1599 - multidrug resistance protein MdtJ 1538 51.82 0 1589341..1589670 + 109 170682978 mdtI EcSMS35_1600 - multidrug resistance protein MdtI 1539 52.07 0 1589709..1590530 - 273 170684042 - EcSMS35_1601 - S1A family peptidase 1540 52.38 0 1590806..1591078 - 90 170681639 - EcSMS35_1602 - acid shock repeat-containing protein 1541 44.83 -1 1591190..1592398 + 402 170681161 - EcSMS35_1603 - IS10 transposase 1542 53.35 0 1592877..1594130 - 417 170680108 ynfM EcSMS35_1604 - major facilitator family transporter 1543 52.24 0 1594237..1595130 + 297 170680231 - EcSMS35_1605 - LysR family transcriptional regulator 1544 52.74 0 1595265..1596485 + 406 170679760 mic EcSMS35_1606 - transcriptional regulator Mic 1545 52.01 0 1596610..1597305 + 231 170684001 bioD2 EcSMS35_1608 - dethiobiotin synthase 1546 53.94 0 1597258..1598514 - 418 170682758 - EcSMS35_1607 - chloride channel (ClC) family protein 1547 53.33 0 1598709..1599323 - 204 170680290 dmsD EcSMS35_1609 - twin-arginine leader-binding protein DmsD 1548 52.16 0 1599366..1600220 - 284 170680653 dmsC2 EcSMS35_1610 - anaerobic dimethyl sulfoxide reductase, C subunit 1549 52.27 0 1600222..1600839 - 205 170679927 dmsB_1 EcSMS35_1611 - dimethylsulfoxide reductase, B subunit 1550 50.06 0 1603333..1605759 - 808 170682222 ynfE EcSMS35_1613 - anaerobic dimethyl sulfoxide reductase, A subunit YnfE 1551 56.54 +1 1605958..1606263 - 101 170681546 - EcSMS35_1614 - hypothetical protein 1552 43.78 -1 1606335..1607081 + 248 170680891 - EcSMS35_1615 - hypothetical protein 1553 47.06 0 1607084..1607644 - 186 170682991 speG EcSMS35_1616 - diamine N-acetyltransferase 1554 50.58 0 1607679..1608020 - 113 170680551 - EcSMS35_1617 - hypothetical protein 1555 51.99 0 1608155..1608481 + 108 170683618 - EcSMS35_1618 - hypothetical protein 1556 51.11 0 1608687..1609901 + 404 170684261 rspA EcSMS35_1619 - starvation-sensing protein RspA 1557 45.39 0 1609913..1610932 + 339 170681959 rspB EcSMS35_1620 - starvation sensing protein RspB 1558 46.64 0 1610990..1612357 + 455 170680764 ydfJ EcSMS35_1621 - inner membrane metabolite transport protein ydfJ 1559 37.61 -2 1612320..1612436 + 38 170681422 - EcSMS35_1622 - hypothetical protein 1560 49.83 0 1612446..1613906 + 486 170679858 - EcSMS35_1623 - mannitol dehydrogenase family protein 1561 51.47 0 1613942..1614145 - 67 170679938 - EcSMS35_1624 - hypothetical protein 1562 50.36 0 1614322..1615008 - 228 170679935 - EcSMS35_1625 - GntR family transcriptional regulator 1563 51.00 0 1615097..1615843 - 248 170680775 - EcSMS35_1626 - NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg 1564 50.34 0 1615980..1618025 + 681 170681397 dcp EcSMS35_1627 - peptidyl-dipeptidase Dcp 1565 46.56 0 1618388..1618780 + 130 170681831 - EcSMS35_1628 - hypothetical protein 1566 44.33 -1 1619035..1619925 + 296 170681992 - EcSMS35_1629 - diguanylate cyclase 1567 50.00 0 1620366..1621553 - 395 170682596 ydeE EcSMS35_1630 - major facilitator family transporter 1568 50.33 0 1621748..1622647 + 299 170682899 eamA EcSMS35_1631 - drug/metabolite exporter family transporter 1569 41.34 -1 1622692..1623390 - 232 170681310 - EcSMS35_1632 - GntR family transcriptional regulator 1570 41.35 -1 1623589..1623900 + 103 170679787 - EcSMS35_1633 - PTS system lactose/cellobiose family IIB subunit 1571 43.84 -1 1624014..1625336 + 440 170680463 - EcSMS35_1634 - PTS system lactose/cellobiose family IIC subunit 1572 45.51 0 1625364..1625675 + 103 170683356 - EcSMS35_1635 - PTS system lactose/cellobiose-specific family IIA subunit 1573 42.00 -1 1625731..1627404 + 557 170680584 bglH EcSMS35_1636 - glucoside specific outer membrane porin BglH 1574 45.21 0 1627429..1628868 + 479 170683087 - EcSMS35_1637 - putative 6-phospho-beta-glucosidase BglA 1575 49.32 0 1628925..1629143 - 72 170682435 marB EcSMS35_1638 - multiple antibiotic resistance protein MarB 1576 45.57 0 1629175..1629558 - 127 170684233 marA EcSMS35_1639 - multiple antibiotic resistance protein MarA 1577 49.66 0 1629579..1630013 - 144 170683414 marR EcSMS35_1640 - multiple antibiotic resistance protein MarR 1578 50.00 0 1630225..1630890 + 221 170680289 marC EcSMS35_1641 - multiple antibiotic resistance protein MarC 1579 51.55 0 1630915..1632105 - 396 170680058 sotB EcSMS35_1642 - sugar efflux transporter SotB 1580 49.59 0 1632023..1632145 + 40 170681467 - EcSMS35_1643 - hypothetical protein 1581 50.83 0 1632182..1632301 + 39 170681472 - EcSMS35_1645 - hypothetical protein 1582 39.70 -1 1632255..1633370 - 371 170680980 - EcSMS35_1644 - hypothetical protein 1583 54.20 0 1633448..1634329 - 293 170682090 - EcSMS35_1646 - LysR family transcriptional regulator 1584 53.06 0 1634430..1635818 + 462 170684086 - EcSMS35_1647 - aldehyde dehydrogenase (NAD) family protein 1585 51.56 0 1635882..1636808 + 308 170683424 glsA2 EcSMS35_1648 - glutaminase 1586 50.28 0 1636808..1637167 + 119 170684186 - EcSMS35_1649 - hypothetical protein 1587 48.56 0 1637306..1638724 + 472 170683666 - EcSMS35_1650 - diguanylate cyclase 1588 51.79 0 1638952..1640403 + 483 170679585 uxaB EcSMS35_1651 - tagaturonate reductase 1589 48.31 0 1640600..1641514 + 304 170681385 - EcSMS35_1652 - hypothetical protein 1590 54.15 0 1641518..1642276 - 252 170681176 tam EcSMS35_1653 - trans-aconitate 2-methyltransferase 1591 46.74 0 1642333..1642623 - 96 170682706 lsrG EcSMS35_1654 - lsrG protein 1592 49.89 0 1642647..1643522 - 291 170682465 lsrF EcSMS35_1655 - lsrF protein 1593 49.66 0 1643549..1644571 - 340 170683902 lsrB EcSMS35_1656 - autoinducer-2 ABC transporter, periplasmic autoinducer-2-binding protein LsrB 1594 53.27 0 1644583..1645575 - 330 170680972 lsrD EcSMS35_1657 - autoinducer-2 ABC transporter, permease protein LsrD 1595 53.84 0 1645575..1646603 - 342 170681527 lsrC EcSMS35_1658 - autoinducer-2 ABC transporter, permease protein LsrC 1596 53.26 0 1646597..1648132 - 511 170679722 lsrA EcSMS35_1659 - autoinducer-2 ABC transporter, ATP-binding protein LsrA 1597 50.10 0 1648381..1649334 + 317 170680199 lsrR EcSMS35_1660 - transcriptional repressor LsrR 1598 52.54 0 1649413..1651005 + 530 170683577 lsrK EcSMS35_1661 - autoinducer-2 kinase 1599 50.07 0 1651535..1656415 + 1626 170684085 - EcSMS35_1662 - pertactin family protein 1600 39.84 -1 1656724..1656846 + 40 170682223 - EcSMS35_1663 - hypothetical protein 1601 46.99 0 1657614..1658177 + 187 170682216 - EcSMS35_1664 - fimbrial protein 1602 44.87 -1 1658540..1659250 + 236 170683705 - EcSMS35_1665 - periplasmic pilus chaperone family protein 1603 44.34 -1 1659328..1661943 + 871 170679788 - EcSMS35_1666 - fimbrial usher family protein 1604 44.26 -1 1661957..1662487 + 176 170684138 - EcSMS35_1667 - protein FimF-like protein 1605 46.45 0 1662500..1663147 + 215 170682655 - EcSMS35_1669 - protein FimG-like protein 1606 54.97 0 1662987..1663892 - 301 170684099 - EcSMS35_1668 - IS2 transposase orfB 1607 50.61 0 1663850..1664260 - 136 170683416 - EcSMS35_1670 - IS2 transposase orfA 1608 44.04 -1 1664399..1665313 + 304 170683036 - EcSMS35_1671 - protein FimH-like protein 1609 49.82 0 1665652..1667931 + 759 170682379 - EcSMS35_1672 - molybdopterin oxidoreductase, alpha subunit 1610 38.38 -2 1668179..1668376 + 65 170680802 - EcSMS35_1673 - hypothetical protein 1611 40.29 -1 1668451..1669212 + 253 170680428 - EcSMS35_1674 - AraC family transcriptional regulator 1612 44.51 -1 1669676..1671295 + 539 170679774 - EcSMS35_1675 - sulfatase 1613 38.95 -2 1671347..1672504 + 385 170682242 - EcSMS35_1676 - radical SAM domain-containing protein 1614 43.18 -1 1672795..1674480 + 561 170682224 - EcSMS35_1677 - inner membrane ABC transporter ATP-binding protein 1615 46.06 0 1674518..1676890 + 790 170681386 - EcSMS35_1678 - TonB-dependent receptor 1616 46.80 0 1676947..1679730 + 927 170681032 pqqL EcSMS35_1679 - M16B family peptidase 1617 53.89 0 1680092..1681492 + 466 170680042 gadA EcSMS35_1680 - glutamate decarboxylase GadA 1618 48.24 0 1681648..1683183 + 511 170679725 gadC EcSMS35_1681 - glutamate:gamma aminobutyrate antiporter 1619 52.92 0 1683419..1684633 + 404 170683453 - EcSMS35_1682 - putative lipoprotein 1620 44.69 -1 1685009..1686391 + 460 170683103 - EcSMS35_1683 - diguanylate cyclase 1621 50.21 0 1686392..1688815 + 807 170683445 dos EcSMS35_1684 - heme-regulated cyclic AMP phosphodiesterase 1622 52.75 0 1689073..1689654 + 193 170680875 ddpX EcSMS35_1685 - D-alanyl-D-alanine dipeptidase 1623 50.29 0 1689668..1691218 + 516 170681069 - EcSMS35_1686 - putative ABC transporter periplasmic-binding protein yddS precursor 50.50 MEAN 5.49 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.