IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
884	 47.88	0	985746..986240	+	164	170080547	lrp	ECDH10B_0959	-	DNA-binding transcriptional dual regulator, leucine-binding
885	 54.01	0	986375..990364	+	1329	170080548	ftsK	ECDH10B_0960	-	DNA-binding membrane protein required for chromosome resolution and partitioning
886	 50.98	0	990523..991134	+	203	170080549	lolA	ECDH10B_0961	-	chaperone for lipoproteins
887	 53.57	0	991145..992488	+	447	170080550	ycaJ	ECDH10B_0962	-	recombination protein
888	 52.67	0	992579..993871	+	430	170080551	serS	ECDH10B_0963	-	seryl-tRNA synthetase, also charges selenocysteinyl-tRNA with serine
889	 52.72	0	994110..996554	+	814	170080552	dmsA	ECDH10B_0964	-	dimethyl sulfoxide reductase, anaerobic, subunit A
890	 51.78	0	996565..997182	+	205	170080553	dmsB	ECDH10B_0965	-	dimethyl sulfoxide reductase, anaerobic, subunit B
891	 54.63	0	997184..998047	+	287	170080554	dmsC	ECDH10B_0966	-	dimethyl sulfoxide reductase, anaerobic, subunit C
892	 46.25	-1	998082..998708	-	208	170080555	ycaC	ECDH10B_0967	-	hydrolase
893	 52.05	0	999022..1000170	+	382	170080556	ycaD	ECDH10B_0968	-	transporter
894	 47.17	0	1000380..1001810	+	476	170080557	ycaM	ECDH10B_0969	-	transporter
895	 46.64	0	1001811..1002719	-	302	170080558	ycaN	ECDH10B_0970	-	DNA-binding transcriptional regulator
896	 42.81	-1	1002819..1003409	+	196	170080559	ycaK	ECDH10B_0971	-	hypothetical protein
897	 50.34	0	1003491..1004231	-	246	170080560	pflA	ECDH10B_0972	-	pyruvate formate lyase activating enzyme 1
898	 51.20	0	1004423..1006705	-	760	170080561	pflB	ECDH10B_0973	-	pyruvate formate lyase I
899	 48.95	0	1006760..1007617	-	285	170080562	focA	ECDH10B_0974	-	formate transporter
900	 51.56	0	1008023..1009783	-	586	170080563	ycaO	ECDH10B_0975	-	hypothetical protein
901	 47.62	0	1009913..1010605	+	230	170080564	ycaP	ECDH10B_0976	-	inner membrane protein
902	 50.14	0	1010804..1011892	+	362	170080565	serC	ECDH10B_0977	-	3-phosphoserine/phosphohydroxythreonine aminotransferase
903	 50.78	0	1011963..1013246	+	427	170080566	aroA	ECDH10B_0978	-	5-enolpyruvylshikimate-3-phosphate synthetase
904	 49.93	0	1013415..1014179	+	254	170080567	ycaL	ECDH10B_0979	-	peptidase with chaperone function
905	 53.65	0	1014352..1015035	+	227	170080568	cmk	ECDH10B_0980	-	cytidylate kinase
906	 51.19	0	1015146..1016819	+	557	170080569	rpsA	ECDH10B_0981	-	30S ribosomal subunit protein S1
907	 49.12	0	1016979..1017263	+	94	170080570	ihfB	ECDH10B_0982	-	integration host factor (IHF), DNA-binding protein, beta subunit
908	 49.49	0	1017471..1019735	+	754	170080571	ycaI	ECDH10B_0983	-	inner membrane protein
909	 50.89	0	1019772..1021520	+	582	170080572	msbA	ECDH10B_0984	-	lipid ABC transporter membrane protein; ATP-binding protein
910	 54.61	0	1021517..1022503	+	328	170080573	lpxK	ECDH10B_0985	-	lipid A 4'kinase
911	 52.31	0	1022540..1023772	+	410	170080574	ycaQ	ECDH10B_0986	-	hypothetical protein
912	 48.09	0	1023824..1024006	+	60	170080575	ycaR	ECDH10B_0987	-	hypothetical protein
913	 52.74	0	1024003..1024749	+	248	170080576	kdsB	ECDH10B_0988	-	3-deoxy-manno-octulosonate cytidylyltransferase
914	 52.46	0	1024903..1025796	+	297	170080577	ycbJ	ECDH10B_0989	-	hypothetical protein
915	 52.18	0	1025773..1026552	-	259	170080578	ycbC	ECDH10B_0990	-	inner membrane protein
916	 51.53	0	1026688..1027473	+	261	170080579	smtA	ECDH10B_0991	-	S-adenosyl-L-methionine-dependent methyltransferase
917	 52.83	0	1027470..1028792	+	440	170080580	mukF	ECDH10B_0992	-	involved in chromosome partioning, Ca2+ binding protein
918	 52.36	0	1028800..1029477	+	225	170080581	mukE	ECDH10B_0993	-	MukE
919	 55.66	0	1029477..1033937	+	1486	170080582	mukB	ECDH10B_0994	-	fused chromosome partitioning protein: nucleotide hydrolase; protein; protein
920	 53.14	0	1034198..1036045	+	615	170080583	ycbB	ECDH10B_0995	-	carboxypeptidase
921	 49.73	0	1036226..1036774	+	182	170080584	ycbK	ECDH10B_0996	-	hypothetical protein
922	 51.54	0	1036801..1037448	+	215	170080585	ycbL	ECDH10B_0997	-	metal-binding protein
923	 52.23	0	1037670..1038860	-	396	170080586	aspC	ECDH10B_0998	-	aspartate aminotransferase, PLP-dependent
924	 47.75	0	1039045..1040133	-	362	170080587	ompF	ECDH10B_0999	-	outer membrane porin 1a (Ia;b;F)
925	 52.39	0	1040736..1042136	-	466	170080588	asnS	ECDH10B_1000	-	asparaginyl tRNA synthetase
926	 51.21	0	1042305..1043507	-	400	170080589	pncB	ECDH10B_1001	-	nicotinate phosphoribosyltransferase
927	 53.46	0	1043773..1046385	+	870	170080590	pepN	ECDH10B_1002	-	aminopeptidase N
928	 55.60	0	1046428..1047195	-	255	170080591	ssuB	ECDH10B_1003	-	alkanesulfonate ABC transporter ATP-binding protein
929	 55.81	0	1047192..1047983	-	263	170080592	ssuC	ECDH10B_1004	-	alkanesulfonate ABC transporter membrane protein
930	 56.98	+1	1047994..1049139	-	381	170080593	ssuD	ECDH10B_1005	-	alkanesulfonate monooxygenase, FMNH(2)-dependent
931	 52.40	0	1049136..1050095	-	319	170080594	ssuA	ECDH10B_1006	-	alkanesulfonate ABC transporter periplasmic-binding protein
932	 54.17	0	1050088..1050663	-	191	170080595	ssuE	ECDH10B_1007	-	NAD(P)H-dependent FMN reductase
933	 42.41	-1	1051019..1051558	+	179	170080596	ycbQ	ECDH10B_1008	-	fimbrial-like adhesin protein
934	 45.01	-1	1051641..1052342	+	233	170080597	ycbR	ECDH10B_1009	-	periplasmic pilin chaperone
935	 47.87	0	1052367..1054967	+	866	170080598	ycbS	ECDH10B_1010	-	outer membrane usher protein
936	 48.27	0	1054958..1056028	+	356	170080599	ycbT	ECDH10B_1011	-	fimbrial-like adhesin protein
937	 46.96	0	1056040..1056582	+	180	170080600	ycbU	ECDH10B_1012	-	fimbrial-like adhesin protein
938	 47.29	0	1056590..1057105	+	171	170080601	ycbV	ECDH10B_1013	-	fimbrial-like adhesin protein
939	 51.76	0	1057098..1057808	+	236	170080602	ycbF	ECDH10B_1014	-	periplasmic pilini chaperone
940	 46.98	0	1057919..1058929	+	336	170080603	pyrD	ECDH10B_1015	-	dihydro-orotate oxidase, FMN-linked
941	 49.36	0	1059103..1059645	+	180	170080604	ycbW	ECDH10B_1016	-	hypothetical protein
942	 50.45	0	1059642..1060751	-	369	170080605	ycbX	ECDH10B_1017	-	2Fe-2S cluster-containing protein
943	 54.24	0	1060995..1063103	+	702	170080606	rlmL	ECDH10B_1018	-	23S rRNA m2G2445 methyltransferase
944	 52.41	0	1063115..1065022	+	635	170080607	uup	ECDH10B_1019	-	ABC transporter ATP-binding protein
945	 52.23	0	1065152..1066405	+	417	170080608	pqiA	ECDH10B_1020	-	paraquat-inducible membrane protein A
946	 50.21	0	1066410..1068050	+	546	170080609	pqiB	ECDH10B_1021	-	paraquat-inducible protein B
947	 52.13	0	1068047..1068610	+	187	170080610	ymbA	ECDH10B_1022	-	hypothetical protein
948	 54.17	0	1068866..1069033	+	55	170080611	rmf	ECDH10B_1023	-	ribosome modulation factor
949	 53.18	0	1069103..1069621	-	172	170080612	fabA	ECDH10B_1024	-	beta-hydroxydecanoyl thioester dehydrase
950	 51.79	0	1069690..1071450	-	586	170080613	ycbZ	ECDH10B_1025	-	peptidase
951	 46.14	-1	1071636..1072088	+	150	170080614	ycbG	ECDH10B_1026	-	hypothetical protein
952	 53.79	0	1072164..1073204	-	346	170080615	ompA	ECDH10B_1027	-	outer membrane protein A (3a;II*;G;d)
953	 48.24	0	1073561..1074070	-	169	170080616	sulA	ECDH10B_1028	-	SOS cell division inhibitor
954	 48.10	0	1074289..1074918	+	209	170080617	sxy	ECDH10B_1029	-	CRP-S promoter co-activator
955	 52.23	0	1074881..1077034	-	717	170080618	yccS	ECDH10B_1030	-	inner membrane protein
956	 48.32	0	1077053..1077499	-	148	170080619	yccF	ECDH10B_1031	-	inner membrane protein
957	 53.04	0	1077622..1079676	+	684	170080620	helD	ECDH10B_1032	-	DNA helicase IV
958	 52.72	0	1079708..1080166	-	152	170080621	mgsA	ECDH10B_1033	-	methylglyoxal synthase
959	 50.68	0	1080262..1080924	-	220	170080622	yccT	ECDH10B_1034	-	hypothetical protein
960	 54.35	0	1081097..1081510	+	137	170080623	yccU	ECDH10B_1035	-	CoA-binding protein
961	 55.66	0	1081555..1081872	-	105	170080624	hspQ	ECDH10B_1036	-	DNA-binding protein, hemimethylated
962	 51.81	0	1081930..1083120	-	396	170080625	yccW	ECDH10B_1037	-	methyltransferase
963	 52.33	0	1083215..1083493	+	92	170080626	yccX	ECDH10B_1038	-	acylphosphatase
964	 46.67	0	1083490..1083819	-	109	170080627	yccK	ECDH10B_1039	-	sulfur transfer protein
965	 51.21	0	1083910..1084569	-	219	170080628	yccA	ECDH10B_1040	-	inner membrane protein
966	 56.12	+1	1085290..1086408	+	372	170080629	hyaA	ECDH10B_1042	-	hydrogenase 1, small subunit
967	 56.52	+1	1086405..1088198	+	597	170080630	hyaB	ECDH10B_1043	-	hydrogenase 1, large subunit
968	 51.84	0	1088217..1088924	+	235	170080631	hyaC	ECDH10B_1044	-	hydrogenase 1, b-type cytochrome subunit
969	 58.84	+1	1088921..1089508	+	195	170080632	hyaD	ECDH10B_1045	-	hypothetical protein
970	 56.64	+1	1089505..1089903	+	132	170080633	hyaE	ECDH10B_1046	-	HyaE
971	 54.90	0	1089900..1090757	+	285	170080634	hyaF	ECDH10B_1047	-	HyaF
972	 54.05	0	1090891..1092435	+	514	170080635	appC	ECDH10B_1048	-	cytochrome bd-II oxidase, subunit I
973	 53.12	0	1092447..1093583	+	378	170080636	appB	ECDH10B_1049	-	cytochrome bd-II oxidase, subunit II
974	 53.89	0	1093768..1095066	+	432	170080637	appA	ECDH10B_1050	-	phosphoanhydride phosphorylase
975	 50.53	0	1095181..1097361	-	726	170080638	etk	ECDH10B_1051	-	cryptic autophosphorylating protein tyrosine kinase Etk
976	 52.35	0	1097381..1097827	-	148	170080639	etp	ECDH10B_1052	-	phosphotyrosine-protein phosphatase
977	 50.96	0	1097815..1098954	-	379	170080640	gfcE	ECDH10B_1053	-	exopolysaccharide export protein
978	 51.98	0	1099000..1101096	-	698	170080