IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
437	 52.38	0	483869..484918	-	349	170080100	allD	ECDH10B_0473	-	ureidoglycolate dehydrogenase
438	 55.58	0	485235..486902	+	555	170080101	fdrA	ECDH10B_0474	-	acyl-CoA synthetase
439	 57.22	+1	486912..488171	+	419	170080102	ylbE	ECDH10B_0475	-	hypothetical protein
440	 56.86	+1	488182..488997	+	271	170080103	ylbF	ECDH10B_0476	-	hypothetical protein
441	 56.94	+1	488994..489887	+	297	170080104	ybcF	ECDH10B_0477	-	carbamate kinase
442	 56.46	+1	490082..491149	-	355	170080105	purK	ECDH10B_0478	-	N5-carboxyaminoimidazole ribonucleotide synthase
443	 59.02	+1	491146..491655	-	169	170080106	purE	ECDH10B_0479	-	N5-carboxyaminoimidazole ribonucleotide mutase
444	 54.50	0	491773..492495	-	240	170080107	lpxH	ECDH10B_0480	-	UDP-2,3-diacylglucosamine pyrophosphatase
445	 47.88	0	492498..492992	-	164	170080108	ppiB	ECDH10B_0481	-	peptidyl-prolyl cis-trans isomerase B (rotamase B)
446	 54.47	0	493166..494551	+	461	170080109	cysS	ECDH10B_0482	-	cysteinyl-tRNA synthetase
447	 53.07	0	494587..495108	-	173	170080110	ybcI	ECDH10B_0483	-	inner membrane protein
448	 54.93	0	495216..495428	-	70	170080111	ybcJ	ECDH10B_0484	-	RNA-binding protein
449	 54.33	0	495430..496296	-	288	170080112	folD	ECDH10B_0485	-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase
450	 44.57	-1	496767..497309	+	180	170080113	sfmA	ECDH10B_0486	-	fimbrial-like adhesin protein
451	 42.57	-1	497529..498221	+	230	170080114	sfmC	ECDH10B_0487	-	pilin chaperone, periplasmic
452	 47.81	0	498252..500855	+	867	170080115	sfmD	ECDH10B_0488	-	outer membrane export usher protein
453	 45.53	-1	500891..501874	+	327	170080116	sfmH	ECDH10B_0489	-	fimbrial-like adhesin protein
454	 50.00	0	501885..502400	+	171	170080117	sfmF	ECDH10B_0490	-	fimbrial-like adhesin protein
455	 36.65	-2	502403..503035	-	210	170080118	fimZ	ECDH10B_0491	-	DNA-binding transcriptional regulator
456	 46.91	0	503370..504533	-	387	170080119	intD	ECDH10B_0493	-	DLP12 prophage; integrase
457	 49.62	0	504653..504916	-	87	170080120	ybcC	ECDH10B_0494	-	DLP12 prophage; exonuclease
458	 50.16	0	505388..505696	+	102	170080121	insE-3	ECDH10B_0496	-	DLP12 prophage; IS3 element protein InsE
459	 55.13	0	505693..506559	+	288	170080122	insF-3	ECDH10B_0497	-	DLP12 prophage; IS3 element protein InsF
460	 48.92	0	506617..506802	+	61	170080123	renD	ECDH10B_0498	-	DLP12 prophage; hypothetical protein
461	 41.14	-2	506870..507202	+	110	170080124	emrE	ECDH10B_0499	-	DLP12 prophage; multidrug resistance protein
462	 35.56	-2	507457..508983	+	508	170080125	ybcK	ECDH10B_0500	-	DLP12 prophage; recombinase
463	 42.39	-1	509448..509999	+	183	170080126	ybcL	ECDH10B_0501	-	DLP12 prophage; kinase inhibitor
464	 36.22	-2	510009..510806	+	265	170080127	ybcM	ECDH10B_0502	-	DLP12 prophage; DNA-binding transcriptional regulator
465	 50.44	0	511021..511476	+	151	170080128	ybcN	ECDH10B_0503	-	DLP12 prophage; hypothetical protein
466	 48.54	0	511476..511646	+	56	170080129	ninE	ECDH10B_0504	-	DLP12 prophage; hypothetical protein
467	 53.26	0	511639..511929	+	96	170080130	ybcO	ECDH10B_0505	-	DLP12 prophage; hypothetical protein
468	 53.17	0	511926..512288	+	120	170080131	rusA	ECDH10B_0506	-	DLP12 prophage; endonuclease RUS
469	 47.52	0	512285..512425	+	46	170080132	ylcG	ECDH10B_0507	-	DLP12 prophage; hypothetical protein
470	 42.97	-1	512511..512894	+	127	170080133	ybcQ	ECDH10B_0508	-	DLP12 prophage; antitermination protein
471	 54.67	0	513292..514308	-	338	170080134	insH-2	ECDH10B_0510	-	DLP12 prophage; IS5 transposase and trans-activator
472	 47.69	0	515953..516168	+	71	170080135	essD	ECDH10B_0511	-	DLP12 prophage; phage lysis protein
473	 47.59	0	516168..516665	+	165	170080136	ybcS	ECDH10B_0512	-	DLP12 prophage; lysozyme
474	 51.30	0	516662..517123	+	153	170080137	rzpD	ECDH10B_0513	-	DLP12 prophage; murein endopeptidase
475	 56.83	+1	516882..517064	+	60	170080138	rzoD	ECDH10B_0514	-	DLP12 prophage; lipoprotein
476	 41.50	-2	517155..517448	-	97	170080139	borD	ECDH10B_0515	-	DLP12 prophage; lipoprotein
477	 31.63	-2	517739..518149	-	136	170080140	ybcV	ECDH10B_0516	-	DLP12 prophage; hypothetical protein
478	 39.61	-2	518435..518641	+	68	170080141	ybcW	ECDH10B_0517	-	DLP12 prophage; hypothetical protein
479	 52.56	0	519389..519934	+	181	170080142	nohB	ECDH10B_0518	-	DLP12 prophage; DNA packaging protein
480	 31.73	-2	522236..522985	+	249	170080143	appY	ECDH10B_0522	-	DLP12 prophage; DNA-binding transcriptional activator
481	 43.40	-1	523235..524188	-	317	170080144	ompT	ECDH10B_0523	-	DLP12 prophage; outer membrane protease VII (outer membrane protein 3b)
482	 46.33	-1	524702..525463	-	253	170080145	envY	ECDH10B_0524	-	DNA-binding transcriptional activator of porin biosynthesis
483	 52.30	0	525646..526536	-	296	170080146	ybcH	ECDH10B_0525	-	hypothetical protein
484	 55.06	0	526537..529509	-	990	170080147	nfrA	ECDH10B_0526	-	bacteriophage N4 receptor, outer membrane subunit
485	 52.50	0	529496..531733	-	745	170080148	nfrB	ECDH10B_0527	-	bacteriophage N4 receptor, inner membrane subunit
486	 52.04	0	531883..533325	-	480	170080149	cusS	ECDH10B_0528	-	sensory histidine kinase in two-component regulatory system with CusR, senses copper ions
487	 53.80	0	533315..533998	-	227	170080150	cusR	ECDH10B_0529	-	DNA-binding response regulator in two-component regulatory system with CusS
488	 51.24	0	534155..535528	+	457	170080151	cusC	ECDH10B_0530	-	copper/silver efflux system, outer membrane component
489	 45.35	-1	535686..536018	+	110	170080152	cusF	ECDH10B_0531	-	periplasmic copper-binding protein
490	 55.72	0	536034..537257	+	407	170080153	cusB	ECDH10B_0532	-	copper/silver efflux system, membrane fusion protein
491	 55.69	0	537269..540412	+	1047	170080154	cusA	ECDH10B_0533	-	copper/silver efflux system, membrane component
492	 52.51	0	540514..541890	+	458	170080155	pheP	ECDH10B_0534	-	phenylalanine transporter
493	 47.52	0	541971..543218	-	415	170080156	ybdG	ECDH10B_0535	-	mechanosensitive channel
494	 51.53	0	543326..543979	-	217	170080157	nfnB	ECDH10B_0536	-	dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive
495	 47.15	0	544073..544441	-	122	170080158	ybdF	ECDH10B_0537	-	hypothetical protein
496	 50.60	0	544506..544754	-	82	170080159	ybdJ	ECDH10B_0538	-	inner membrane protein
497	 51.92	0	544820..545938	-	372	170080160	ybdK	ECDH10B_0539	-	gamma-glutamyl:cysteine ligase
498	 47.71	0	546391..546543	+	50	170080161	hokE	ECDH10B_0540	-	toxic polypeptide, small
499	 51.93	0	546620..547732	+	370	170080162	insL-2	ECDH10B_0541	-	IS186/IS421 transposase
500	 47.46	0	548014..548643	-	209	170080163	entD	ECDH10B_0542	-	phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex
501	 54.08	0	548809..551049	-	746	170080164	fepA	ECDH10B_0543	-	iron-enterobactin outer membrane transporter
502	 55.02	0	551370..552494	+	374	170080165	fes	ECDH10B_0544	-	enterobactin/ferric enterobactin esterase
503	 55.71	0	552497..552715	+	72	170080166	ybdZ	ECDH10B_0545	-	hypothetical protein
504	 56.54	+1	552712..556593	+	1293	170080167	entF	ECDH10B_0546	-	enterobactin synthase multienzyme complex component F, ATP-dependent
505	 44.97	-1	556809..557942	+	377	170080168	fepE	ECDH10B_0547	-	regulator of length of O-antigen component of lipopolysaccharide chains
506	 53.92	0	557939..558754	-	271	170080169	fepC	ECDH10B_0548	-	iron-enterobactin ABC transporter ATP-binding protein
507	 58.21	+1	558751..559743	-	330	170080170	fepG	ECDH10B_0549	-	iron-enterobactin ABC transporter membrane component
508	 61.00	+2	559740..560744	-	334	170080171	fepD	ECDH10B_0550	-	iron-enterobactin ABC transporter membrane protein
509	 58.03	+1	560855..562105	+	416	170080172	entS	ECDH10B_0551	-	transporter
510	 55.07	0	562109..563065	-	318	170080173	fepB	ECDH10B_0552	-	iron-enterobactin ABC transporter periplasmic-binding component
511	 56.46	+1	563440..564615	+	391	170080174	entC	ECDH10B_0553	-	isochorismate synthase 1
512	 56.05	+1	564625..566235	+	536	170080175	entE	ECDH10B_0554	-	enterobactin synthetase component E
513	 55.36	0	566249..567106	+	285	170080176	entB	ECDH10B_0555	-	isochorismatase
514	 57.97	+1	567106..567852	+	248	170080177	entA	ECDH10B_0556	-	2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
515	 56.76	+1	567855..568268	+	137	170080178	ybdB	ECDH10B_0557	-	hypothetical protein
516	 57.22	+1	568449..570554	+	701	170080179	cstA	ECDH10B_0558	-	carbon starvation protein
517	 52.02	0	570737..570934	+	65	170080180	ybdD	ECDH10B_0559	-	hypothetical protein
518	 55.19	0	570944..572032	-	362	170080181	ybdH	ECDH10B_0560	-	oxidoreductase
519	 53.83	0	572141..573301	+	386	170080182	ybdL	ECDH10B_0561	-	methionine aminotransferase, PLP-dependent
520	 46.83	0	573302..573931	-	209	170080183	ybdM	ECDH10B_0562	-	hypothetical protein
521	 47.58	0	573904..575124	-	406	170080184	ybdN	ECDH10B_0563	-	hypothetical protein
522	 38.65	-2	575271..576173	-	300	170080185	ybdO	ECDH10B_0564	-	DNA-binding transcriptional regulator
523	 46.85	0	576382..577128	-	248	170080186	dsbG	ECDH10B_0565	-	periplasmic disulfide isomerase/thiol-disulphide oxidase
524	 50.00	0	577500..578063	+	187	170080187	ahpC	ECDH10B_0566	-	alkyl hydroperoxide reductase, C22 subunit
525	 53.13	0	578308..579873	+	521	170080188	ahpF	ECDH10B_0567	-	alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding
526	 49.88	0	579994..580422	-	142	170080189	uspG	ECDH10B_0568	-	universal stress protein UP12
527	 50.12	0	580643..581881	+	412	170080190	ybdR	ECDH10B_0569	-	oxidoreductase, Zn-dependent and NAD(P)-binding
528	 54.74	0	582112..582522	-	136	170080191	rnk	ECDH10B_0570	-	regulator of nucleoside diphosphate kinase
529	 51.18	0	582752..583558	-	268	170080192	rna	ECDH10B_0571	-	ribonuclease I
530