version 1.0
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137 4126 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 433 51.23 0 479120..480421 + 433 170080096 ybbY ECDH10B_0469 - uracil/xanthine transporter 434 55.58 0 480443..481588 + 381 170080097 glxK ECDH10B_0470 - glycerate kinase II 435 46.18 -1 481816..482601 - 261 170080098 ylbA ECDH10B_0471 - hypothetical protein 436 51.38 0 482612..483847 - 411 170080099 allC ECDH10B_0472 - allantoate amidohydrolase 437 52.38 0 483869..484918 - 349 170080100 allD ECDH10B_0473 - ureidoglycolate dehydrogenase 438 55.58 0 485235..486902 + 555 170080101 fdrA ECDH10B_0474 - acyl-CoA synthetase 439 57.22 +1 486912..488171 + 419 170080102 ylbE ECDH10B_0475 - hypothetical protein 440 56.86 +1 488182..488997 + 271 170080103 ylbF ECDH10B_0476 - hypothetical protein 441 56.94 +1 488994..489887 + 297 170080104 ybcF ECDH10B_0477 - carbamate kinase 442 56.46 +1 490082..491149 - 355 170080105 purK ECDH10B_0478 - N5-carboxyaminoimidazole ribonucleotide synthase 443 59.02 +1 491146..491655 - 169 170080106 purE ECDH10B_0479 - N5-carboxyaminoimidazole ribonucleotide mutase 444 54.50 0 491773..492495 - 240 170080107 lpxH ECDH10B_0480 - UDP-2,3-diacylglucosamine pyrophosphatase 445 47.88 0 492498..492992 - 164 170080108 ppiB ECDH10B_0481 - peptidyl-prolyl cis-trans isomerase B (rotamase B) 446 54.47 0 493166..494551 + 461 170080109 cysS ECDH10B_0482 - cysteinyl-tRNA synthetase 447 53.07 0 494587..495108 - 173 170080110 ybcI ECDH10B_0483 - inner membrane protein 448 54.93 0 495216..495428 - 70 170080111 ybcJ ECDH10B_0484 - RNA-binding protein 449 54.33 0 495430..496296 - 288 170080112 folD ECDH10B_0485 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase 450 44.57 -1 496767..497309 + 180 170080113 sfmA ECDH10B_0486 - fimbrial-like adhesin protein 451 42.57 -1 497529..498221 + 230 170080114 sfmC ECDH10B_0487 - pilin chaperone, periplasmic 452 47.81 0 498252..500855 + 867 170080115 sfmD ECDH10B_0488 - outer membrane export usher protein 453 45.53 -1 500891..501874 + 327 170080116 sfmH ECDH10B_0489 - fimbrial-like adhesin protein 454 50.00 0 501885..502400 + 171 170080117 sfmF ECDH10B_0490 - fimbrial-like adhesin protein 455 36.65 -2 502403..503035 - 210 170080118 fimZ ECDH10B_0491 - DNA-binding transcriptional regulator 456 46.91 0 503370..504533 - 387 170080119 intD ECDH10B_0493 - DLP12 prophage; integrase 457 49.62 0 504653..504916 - 87 170080120 ybcC ECDH10B_0494 - DLP12 prophage; exonuclease 458 50.16 0 505388..505696 + 102 170080121 insE-3 ECDH10B_0496 - DLP12 prophage; IS3 element protein InsE 459 55.13 0 505693..506559 + 288 170080122 insF-3 ECDH10B_0497 - DLP12 prophage; IS3 element protein InsF 460 48.92 0 506617..506802 + 61 170080123 renD ECDH10B_0498 - DLP12 prophage; hypothetical protein 461 41.14 -2 506870..507202 + 110 170080124 emrE ECDH10B_0499 - DLP12 prophage; multidrug resistance protein 462 35.56 -2 507457..508983 + 508 170080125 ybcK ECDH10B_0500 - DLP12 prophage; recombinase 463 42.39 -1 509448..509999 + 183 170080126 ybcL ECDH10B_0501 - DLP12 prophage; kinase inhibitor 464 36.22 -2 510009..510806 + 265 170080127 ybcM ECDH10B_0502 - DLP12 prophage; DNA-binding transcriptional regulator 465 50.44 0 511021..511476 + 151 170080128 ybcN ECDH10B_0503 - DLP12 prophage; hypothetical protein 466 48.54 0 511476..511646 + 56 170080129 ninE ECDH10B_0504 - DLP12 prophage; hypothetical protein 467 53.26 0 511639..511929 + 96 170080130 ybcO ECDH10B_0505 - DLP12 prophage; hypothetical protein 468 53.17 0 511926..512288 + 120 170080131 rusA ECDH10B_0506 - DLP12 prophage; endonuclease RUS 469 47.52 0 512285..512425 + 46 170080132 ylcG ECDH10B_0507 - DLP12 prophage; hypothetical protein 470 42.97 -1 512511..512894 + 127 170080133 ybcQ ECDH10B_0508 - DLP12 prophage; antitermination protein 471 54.67 0 513292..514308 - 338 170080134 insH-2 ECDH10B_0510 - DLP12 prophage; IS5 transposase and trans-activator 472 47.69 0 515953..516168 + 71 170080135 essD ECDH10B_0511 - DLP12 prophage; phage lysis protein 473 47.59 0 516168..516665 + 165 170080136 ybcS ECDH10B_0512 - DLP12 prophage; lysozyme 474 51.30 0 516662..517123 + 153 170080137 rzpD ECDH10B_0513 - DLP12 prophage; murein endopeptidase 475 56.83 +1 516882..517064 + 60 170080138 rzoD ECDH10B_0514 - DLP12 prophage; lipoprotein 476 41.50 -2 517155..517448 - 97 170080139 borD ECDH10B_0515 - DLP12 prophage; lipoprotein 477 31.63 -2 517739..518149 - 136 170080140 ybcV ECDH10B_0516 - DLP12 prophage; hypothetical protein 478 39.61 -2 518435..518641 + 68 170080141 ybcW ECDH10B_0517 - DLP12 prophage; hypothetical protein 479 52.56 0 519389..519934 + 181 170080142 nohB ECDH10B_0518 - DLP12 prophage; DNA packaging protein 480 31.73 -2 522236..522985 + 249 170080143 appY ECDH10B_0522 - DLP12 prophage; DNA-binding transcriptional activator 481 43.40 -1 523235..524188 - 317 170080144 ompT ECDH10B_0523 - DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) 482 46.33 -1 524702..525463 - 253 170080145 envY ECDH10B_0524 - DNA-binding transcriptional activator of porin biosynthesis 483 52.30 0 525646..526536 - 296 170080146 ybcH ECDH10B_0525 - hypothetical protein 484 55.06 0 526537..529509 - 990 170080147 nfrA ECDH10B_0526 - bacteriophage N4 receptor, outer membrane subunit 485 52.50 0 529496..531733 - 745 170080148 nfrB ECDH10B_0527 - bacteriophage N4 receptor, inner membrane subunit 486 52.04 0 531883..533325 - 480 170080149 cusS ECDH10B_0528 - sensory histidine kinase in two-component regulatory system with CusR, senses copper ions 487 53.80 0 533315..533998 - 227 170080150 cusR ECDH10B_0529 - DNA-binding response regulator in two-component regulatory system with CusS 488 51.24 0 534155..535528 + 457 170080151 cusC ECDH10B_0530 - copper/silver efflux system, outer membrane component 489 45.35 -1 535686..536018 + 110 170080152 cusF ECDH10B_0531 - periplasmic copper-binding protein 490 55.72 0 536034..537257 + 407 170080153 cusB ECDH10B_0532 - copper/silver efflux system, membrane fusion protein 491 55.69 0 537269..540412 + 1047 170080154 cusA ECDH10B_0533 - copper/silver efflux system, membrane component 492 52.51 0 540514..541890 + 458 170080155 pheP ECDH10B_0534 - phenylalanine transporter 493 47.52 0 541971..543218 - 415 170080156 ybdG ECDH10B_0535 - mechanosensitive channel 494 51.53 0 543326..543979 - 217 170080157 nfnB ECDH10B_0536 - dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive 495 47.15 0 544073..544441 - 122 170080158 ybdF ECDH10B_0537 - hypothetical protein 496 50.60 0 544506..544754 - 82 170080159 ybdJ ECDH10B_0538 - inner membrane protein 497 51.92 0 544820..545938 - 372 170080160 ybdK ECDH10B_0539 - gamma-glutamyl:cysteine ligase 498 47.71 0 546391..546543 + 50 170080161 hokE ECDH10B_0540 - toxic polypeptide, small 499 51.93 0 546620..547732 + 370 170080162 insL-2 ECDH10B_0541 - IS186/IS421 transposase 500 47.46 0 548014..548643 - 209 170080163 entD ECDH10B_0542 - phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 501 54.08 0 548809..551049 - 746 170080164 fepA ECDH10B_0543 - iron-enterobactin outer membrane transporter 502 55.02 0 551370..552494 + 374 170080165 fes ECDH10B_0544 - enterobactin/ferric enterobactin esterase 503 55.71 0 552497..552715 + 72 170080166 ybdZ ECDH10B_0545 - hypothetical protein 504 56.54 +1 552712..556593 + 1293 170080167 entF ECDH10B_0546 - enterobactin synthase multienzyme complex component F, ATP-dependent 505 44.97 -1 556809..557942 + 377 170080168 fepE ECDH10B_0547 - regulator of length of O-antigen component of lipopolysaccharide chains 506 53.92 0 557939..558754 - 271 170080169 fepC ECDH10B_0548 - iron-enterobactin ABC transporter ATP-binding protein 507 58.21 +1 558751..559743 - 330 170080170 fepG ECDH10B_0549 - iron-enterobactin ABC transporter membrane component 508 61.00 +2 559740..560744 - 334 170080171 fepD ECDH10B_0550 - iron-enterobactin ABC transporter membrane protein 509 58.03 +1 560855..562105 + 416 170080172 entS ECDH10B_0551 - transporter 510 55.07 0 562109..563065 - 318 170080173 fepB ECDH10B_0552 - iron-enterobactin ABC transporter periplasmic-binding component 511 56.46 +1 563440..564615 + 391 170080174 entC ECDH10B_0553 - isochorismate synthase 1 512 56.05 +1 564625..566235 + 536 170080175 entE ECDH10B_0554 - enterobactin synthetase component E 513 55.36 0 566249..567106 + 285 170080176 entB ECDH10B_0555 - isochorismatase 514 57.97 +1 567106..567852 + 248 170080177 entA ECDH10B_0556 - 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase 515 56.76 +1 567855..568268 + 137 170080178 ybdB ECDH10B_0557 - hypothetical protein 516 57.22 +1 568449..570554 + 701 170080179 cstA ECDH10B_0558 - carbon starvation protein 517 52.02 0 570737..570934 + 65 170080180 ybdD ECDH10B_0559 - hypothetical protein 518 55.19 0 570944..572032 - 362 170080181 ybdH ECDH10B_0560 - oxidoreductase 519 53.83 0 572141..573301 + 386 170080182 ybdL ECDH10B_0561 - methionine aminotransferase, PLP-dependent 520 46.83 0 573302..573931 - 209 170080183 ybdM ECDH10B_0562 - hypothetical protein 521 47.58 0 573904..575124 - 406 170080184 ybdN ECDH10B_0563 - hypothetical protein 522 38.65 -2 575271..576173 - 300 170080185 ybdO ECDH10B_0564 - DNA-binding transcriptional regulator 523 46.85 0 576382..577128 - 248 170080186 dsbG ECDH10B_0565 - periplasmic disulfide isomerase/thiol-disulphide oxidase 524 50.00 0 577500..578063 + 187 170080187 ahpC ECDH10B_0566 - alkyl hydroperoxide reductase, C22 subunit 525 53.13 0 578308..579873 + 521 170080188 ahpF ECDH10B_0567 - alkyl hydroperoxide reductase, F52a subunit, FAD/NAD(P)-binding 526 49.88 0 579994..580422 - 142 170080189 uspG ECDH10B_0568 - universal stress protein UP12 527 50.12 0 580643..581881 + 412 170080190 ybdR ECDH10B_0569 - oxidoreductase, Zn-dependent and NAD(P)-binding 528 54.74 0 582112..582522 - 136 170080191 rnk ECDH10B_0570 - regulator of nucleoside diphosphate kinase 529 51.18 0 582752..583558 - 268 170080192 rna ECDH10B_0571 - ribonuclease I 530 50.61 0 583672..585135 - 487 170080193 citT ECDH10B_0572 - citrate:succinate antiporter 531 54.72 0 585186..586064 - 292 170080194 citG ECDH10B_0573 - triphosphoribosyl-dephospho-CoA transferase 532 58.33 +1 586039..586590 - 183 170080195 citX ECDH10B_0574 - apo-citrate lyase phosphoribosyl-dephospho-CoA transferase 51.13 MEAN 4.76 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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