version 1.0
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137 4126 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 407 53.16 0 450196..451128 + 310 170080070 ybaS ECDH10B_0442 - glutaminase 408 53.29 0 451131..452423 + 430 170080071 ybaT ECDH10B_0443 - transporter 409 58.58 +1 452548..452955 + 135 170080072 cueR ECDH10B_0444 - DNA-binding transcriptional activator of copper-responsive regulon genes 410 57.46 +1 452956..453411 - 151 170080073 ybbJ ECDH10B_0445 - inner membrane protein 411 52.83 0 453411..454328 - 305 170080074 qmcA ECDH10B_0446 - protease, membrane anchored 412 45.43 -1 454474..455151 + 225 170080075 ybbL ECDH10B_0447 - ABC transporter ATP-binding protein 413 46.15 -1 455138..455917 + 259 170080076 ybbM ECDH10B_0448 - inner membrane protein 414 55.91 +1 455980..456834 - 284 170080077 ybbN ECDH10B_0449 - thioredoxin domain-containing protein 415 54.32 0 456895..457704 - 269 170080078 ybbO ECDH10B_0450 - oxidoreductase 416 52.79 0 457694..458320 - 208 170080079 tesA ECDH10B_0451 - multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1 417 56.62 +1 458288..458974 + 228 170080080 ybbA ECDH10B_0452 - ABC transporter ATP-binding protein 418 57.60 +1 458971..461385 + 804 170080081 ybbP ECDH10B_0453 - inner membrane protein 419 60.13 +1 461816..466096 + 1426 170080082 rhsD ECDH10B_0454 - rhsD element protein 420 30.62 -2 466136..466504 + 122 170080083 ybbC ECDH10B_0455 - hypothetical protein 421 44.59 -1 466504..467214 + 236 170080084 ylbH ECDH10B_0456 - protein, rhs-like protein 422 50.27 0 468200..468571 - 123 170080085 ylbG ECDH10B_0458 - DNA-binding transcriptional regulator 423 55.62 0 468687..469781 - 364 170080086 ybbB ECDH10B_0459 - tRNA 2-selenouridine synthase, selenophosphate-dependent 424 52.43 0 469850..470776 - 308 170080087 allS ECDH10B_0460 - DNA-binding transcriptional activator of the allD operon 425 51.14 0 471006..471488 + 160 170080088 allA ECDH10B_0461 - ureidoglycolate hydrolase 426 52.57 0 471566..472381 + 271 170080089 allR ECDH10B_0462 - DNA-binding transcriptional repressor 427 52.92 0 472471..474252 + 593 170080090 gcl ECDH10B_0463 - glyoxylate carboligase 428 44.66 -1 474265..475041 + 258 170080091 hyi ECDH10B_0464 - hydroxypyruvate isomerase 429 50.74 0 475141..476019 + 292 170080092 glxR ECDH10B_0465 - tartronate semialdehyde reductase, NADH-dependent 430 35.48 -2 476051..476329 + 92 170080093 ybbV ECDH10B_0466 - hypothetical protein 431 47.01 0 476188..477642 + 484 170080094 ybbW ECDH10B_0467 - allantoin transporter 432 51.62 0 477702..479063 + 453 170080095 allB ECDH10B_0468 - allantoinase 433 51.23 0 479120..480421 + 433 170080096 ybbY ECDH10B_0469 - uracil/xanthine transporter 434 55.58 0 480443..481588 + 381 170080097 glxK ECDH10B_0470 - glycerate kinase II 435 46.18 -1 481816..482601 - 261 170080098 ylbA ECDH10B_0471 - hypothetical protein 436 51.38 0 482612..483847 - 411 170080099 allC ECDH10B_0472 - allantoate amidohydrolase 437 52.38 0 483869..484918 - 349 170080100 allD ECDH10B_0473 - ureidoglycolate dehydrogenase 438 55.58 0 485235..486902 + 555 170080101 fdrA ECDH10B_0474 - acyl-CoA synthetase 439 57.22 +1 486912..488171 + 419 170080102 ylbE ECDH10B_0475 - hypothetical protein 440 56.86 +1 488182..488997 + 271 170080103 ylbF ECDH10B_0476 - hypothetical protein 441 56.94 +1 488994..489887 + 297 170080104 ybcF ECDH10B_0477 - carbamate kinase 442 56.46 +1 490082..491149 - 355 170080105 purK ECDH10B_0478 - N5-carboxyaminoimidazole ribonucleotide synthase 443 59.02 +1 491146..491655 - 169 170080106 purE ECDH10B_0479 - N5-carboxyaminoimidazole ribonucleotide mutase 444 54.50 0 491773..492495 - 240 170080107 lpxH ECDH10B_0480 - UDP-2,3-diacylglucosamine pyrophosphatase 445 47.88 0 492498..492992 - 164 170080108 ppiB ECDH10B_0481 - peptidyl-prolyl cis-trans isomerase B (rotamase B) 446 54.47 0 493166..494551 + 461 170080109 cysS ECDH10B_0482 - cysteinyl-tRNA synthetase 447 53.07 0 494587..495108 - 173 170080110 ybcI ECDH10B_0483 - inner membrane protein 448 54.93 0 495216..495428 - 70 170080111 ybcJ ECDH10B_0484 - RNA-binding protein 449 54.33 0 495430..496296 - 288 170080112 folD ECDH10B_0485 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase 450 44.57 -1 496767..497309 + 180 170080113 sfmA ECDH10B_0486 - fimbrial-like adhesin protein 451 42.57 -1 497529..498221 + 230 170080114 sfmC ECDH10B_0487 - pilin chaperone, periplasmic 452 47.81 0 498252..500855 + 867 170080115 sfmD ECDH10B_0488 - outer membrane export usher protein 453 45.53 -1 500891..501874 + 327 170080116 sfmH ECDH10B_0489 - fimbrial-like adhesin protein 454 50.00 0 501885..502400 + 171 170080117 sfmF ECDH10B_0490 - fimbrial-like adhesin protein 455 36.65 -2 502403..503035 - 210 170080118 fimZ ECDH10B_0491 - DNA-binding transcriptional regulator 456 46.91 0 503370..504533 - 387 170080119 intD ECDH10B_0493 - DLP12 prophage; integrase 457 49.62 0 504653..504916 - 87 170080120 ybcC ECDH10B_0494 - DLP12 prophage; exonuclease 458 50.16 0 505388..505696 + 102 170080121 insE-3 ECDH10B_0496 - DLP12 prophage; IS3 element protein InsE 459 55.13 0 505693..506559 + 288 170080122 insF-3 ECDH10B_0497 - DLP12 prophage; IS3 element protein InsF 460 48.92 0 506617..506802 + 61 170080123 renD ECDH10B_0498 - DLP12 prophage; hypothetical protein 461 41.14 -2 506870..507202 + 110 170080124 emrE ECDH10B_0499 - DLP12 prophage; multidrug resistance protein 462 35.56 -2 507457..508983 + 508 170080125 ybcK ECDH10B_0500 - DLP12 prophage; recombinase 463 42.39 -1 509448..509999 + 183 170080126 ybcL ECDH10B_0501 - DLP12 prophage; kinase inhibitor 464 36.22 -2 510009..510806 + 265 170080127 ybcM ECDH10B_0502 - DLP12 prophage; DNA-binding transcriptional regulator 465 50.44 0 511021..511476 + 151 170080128 ybcN ECDH10B_0503 - DLP12 prophage; hypothetical protein 466 48.54 0 511476..511646 + 56 170080129 ninE ECDH10B_0504 - DLP12 prophage; hypothetical protein 467 53.26 0 511639..511929 + 96 170080130 ybcO ECDH10B_0505 - DLP12 prophage; hypothetical protein 468 53.17 0 511926..512288 + 120 170080131 rusA ECDH10B_0506 - DLP12 prophage; endonuclease RUS 469 47.52 0 512285..512425 + 46 170080132 ylcG ECDH10B_0507 - DLP12 prophage; hypothetical protein 470 42.97 -1 512511..512894 + 127 170080133 ybcQ ECDH10B_0508 - DLP12 prophage; antitermination protein 471 54.67 0 513292..514308 - 338 170080134 insH-2 ECDH10B_0510 - DLP12 prophage; IS5 transposase and trans-activator 472 47.69 0 515953..516168 + 71 170080135 essD ECDH10B_0511 - DLP12 prophage; phage lysis protein 473 47.59 0 516168..516665 + 165 170080136 ybcS ECDH10B_0512 - DLP12 prophage; lysozyme 474 51.30 0 516662..517123 + 153 170080137 rzpD ECDH10B_0513 - DLP12 prophage; murein endopeptidase 475 56.83 +1 516882..517064 + 60 170080138 rzoD ECDH10B_0514 - DLP12 prophage; lipoprotein 476 41.50 -2 517155..517448 - 97 170080139 borD ECDH10B_0515 - DLP12 prophage; lipoprotein 477 31.63 -2 517739..518149 - 136 170080140 ybcV ECDH10B_0516 - DLP12 prophage; hypothetical protein 478 39.61 -2 518435..518641 + 68 170080141 ybcW ECDH10B_0517 - DLP12 prophage; hypothetical protein 479 52.56 0 519389..519934 + 181 170080142 nohB ECDH10B_0518 - DLP12 prophage; DNA packaging protein 480 31.73 -2 522236..522985 + 249 170080143 appY ECDH10B_0522 - DLP12 prophage; DNA-binding transcriptional activator 481 43.40 -1 523235..524188 - 317 170080144 ompT ECDH10B_0523 - DLP12 prophage; outer membrane protease VII (outer membrane protein 3b) 482 46.33 -1 524702..525463 - 253 170080145 envY ECDH10B_0524 - DNA-binding transcriptional activator of porin biosynthesis 483 52.30 0 525646..526536 - 296 170080146 ybcH ECDH10B_0525 - hypothetical protein 484 55.06 0 526537..529509 - 990 170080147 nfrA ECDH10B_0526 - bacteriophage N4 receptor, outer membrane subunit 485 52.50 0 529496..531733 - 745 170080148 nfrB ECDH10B_0527 - bacteriophage N4 receptor, inner membrane subunit 486 52.04 0 531883..533325 - 480 170080149 cusS ECDH10B_0528 - sensory histidine kinase in two-component regulatory system with CusR, senses copper ions 487 53.80 0 533315..533998 - 227 170080150 cusR ECDH10B_0529 - DNA-binding response regulator in two-component regulatory system with CusS 488 51.24 0 534155..535528 + 457 170080151 cusC ECDH10B_0530 - copper/silver efflux system, outer membrane component 489 45.35 -1 535686..536018 + 110 170080152 cusF ECDH10B_0531 - periplasmic copper-binding protein 490 55.72 0 536034..537257 + 407 170080153 cusB ECDH10B_0532 - copper/silver efflux system, membrane fusion protein 491 55.69 0 537269..540412 + 1047 170080154 cusA ECDH10B_0533 - copper/silver efflux system, membrane component 492 52.51 0 540514..541890 + 458 170080155 pheP ECDH10B_0534 - phenylalanine transporter 493 47.52 0 541971..543218 - 415 170080156 ybdG ECDH10B_0535 - mechanosensitive channel 494 51.53 0 543326..543979 - 217 170080157 nfnB ECDH10B_0536 - dihydropteridine reductase, NAD(P)H-dependent, oxygen-insensitive 495 47.15 0 544073..544441 - 122 170080158 ybdF ECDH10B_0537 - hypothetical protein 496 50.60 0 544506..544754 - 82 170080159 ybdJ ECDH10B_0538 - inner membrane protein 497 51.92 0 544820..545938 - 372 170080160 ybdK ECDH10B_0539 - gamma-glutamyl:cysteine ligase 498 47.71 0 546391..546543 + 50 170080161 hokE ECDH10B_0540 - toxic polypeptide, small 499 51.93 0 546620..547732 + 370 170080162 insL-2 ECDH10B_0541 - IS186/IS421 transposase 500 47.46 0 548014..548643 - 209 170080163 entD ECDH10B_0542 - phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex 501 54.08 0 548809..551049 - 746 170080164 fepA ECDH10B_0543 - iron-enterobactin outer membrane transporter 502 55.02 0 551370..552494 + 374 170080165 fes ECDH10B_0544 - enterobactin/ferric enterobactin esterase 503 55.71 0 552497..552715 + 72 170080166 ybdZ ECDH10B_0545 - hypothetical protein 504 56.54 +1 552712..556593 + 1293 170080167 entF ECDH10B_0546 - enterobactin synthase multienzyme complex component F, ATP-dependent 505 44.97 -1 556809..557942 + 377 170080168 fepE ECDH10B_0547 - regulator of length of O-antigen component of lipopolysaccharide chains 506 53.92 0 557939..558754 - 271 170080169 fepC ECDH10B_0548 - iron-enterobactin ABC transporter ATP-binding protein 51.13 MEAN 4.76 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0