IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
384	 53.97	0	419809..422958	-	1049	170080047	acrB	ECDH10B_0418	-	multidrug efflux system protein
385	 53.85	0	422981..424174	-	397	170080048	acrA	ECDH10B_0419	-	multidrug efflux system
386	 45.37	-1	424316..424963	+	215	170080049	acrR	ECDH10B_0420	-	DNA-binding transcriptional repressor
387	 51.89	0	425091..428453	+	1120	170080050	kefA	ECDH10B_0421	-	fused protein; mechanosensitive channel protein
388	 48.15	0	428665..428826	-	53	170080051	ybaM	ECDH10B_0422	-	hypothetical protein
389	 58.90	+1	428840..429367	-	175	170080052	priC	ECDH10B_0423	-	primosomal replication protein N''
390	 52.12	0	429437..429814	+	125	170080053	ybaN	ECDH10B_0424	-	inner membrane protein
391	 54.35	0	429967..430518	+	183	170080054	apt	ECDH10B_0425	-	adenine phosphoribosyltransferase
392	 57.66	+1	430647..432578	+	643	170080055	dnaX	ECDH10B_0426	-	DNA polymerase III/DNA elongation factor III, tau and gamma subunits
393	 52.73	0	432631..432960	+	109	170080056	ybaB	ECDH10B_0427	-	hypothetical protein
394	 57.76	+1	432960..433565	+	201	170080057	recR	ECDH10B_0428	-	gap repair protein
395	 52.85	0	433675..435549	+	624	170080058	htpG	ECDH10B_0429	-	HSP90 family molecular chaperone
396	 51.78	0	435730..436374	+	214	170080059	adk	ECDH10B_0430	-	adenylate kinase
397	 53.89	0	436610..437572	+	320	170080060	hemH	ECDH10B_0431	-	ferrochelatase
398	 52.08	0	437569..438528	-	319	170080061	aes	ECDH10B_0432	-	acetyl esterase
399	 51.88	0	438680..439984	+	434	170080062	gsk	ECDH10B_0433	-	inosine/guanosine kinase
400	 55.46	0	440117..441793	-	558	170080063	ybaL	ECDH10B_0434	-	transporter
401	 52.42	0	442031..443251	-	406	170080064	fsr	ECDH10B_0435	-	fosmidomycin efflux system
402	 50.88	0	443469..445121	+	550	170080065	ushA	ECDH10B_0436	-	bifunctional UDP-sugar hydrolase and 5'-nucleotidase
403	 50.83	0	445158..445637	-	159	170080066	ybaK	ECDH10B_0437	-	bifunctional cys-tRNA Pro deacetylase and cys-tRNA Cys deacylase
404	 54.09	0	445841..446635	-	264	170080067	ybaP	ECDH10B_0439	-	hypothetical protein
405	 44.74	-1	446773..447114	+	113	170080068	ybaQ	ECDH10B_0440	-	DNA-binding transcriptional regulator
406	 58.28	+1	447430..449934	-	834	170080069	copA	ECDH10B_0441	-	copper transporter
407	 53.16	0	450196..451128	+	310	170080070	ybaS	ECDH10B_0442	-	glutaminase
408	 53.29	0	451131..452423	+	430	170080071	ybaT	ECDH10B_0443	-	transporter
409	 58.58	+1	452548..452955	+	135	170080072	cueR	ECDH10B_0444	-	DNA-binding transcriptional activator of copper-responsive regulon genes
410	 57.46	+1	452956..453411	-	151	170080073	ybbJ	ECDH10B_0445	-	inner membrane protein
411	 52.83	0	453411..454328	-	305	170080074	qmcA	ECDH10B_0446	-	protease, membrane anchored
412	 45.43	-1	454474..455151	+	225	170080075	ybbL	ECDH10B_0447	-	ABC transporter ATP-binding protein
413	 46.15	-1	455138..455917	+	259	170080076	ybbM	ECDH10B_0448	-	inner membrane protein
414	 55.91	+1	455980..456834	-	284	170080077	ybbN	ECDH10B_0449	-	thioredoxin domain-containing protein
415	 54.32	0	456895..457704	-	269	170080078	ybbO	ECDH10B_0450	-	oxidoreductase
416	 52.79	0	457694..458320	-	208	170080079	tesA	ECDH10B_0451	-	multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1
417	 56.62	+1	458288..458974	+	228	170080080	ybbA	ECDH10B_0452	-	ABC transporter ATP-binding protein
418	 57.60	+1	458971..461385	+	804	170080081	ybbP	ECDH10B_0453	-	inner membrane protein
419	 60.13	+1	461816..466096	+	1426	170080082	rhsD	ECDH10B_0454	-	rhsD element protein
420	 30.62	-2	466136..466504	+	122	170080083	ybbC	ECDH10B_0455	-	hypothetical protein
421	 44.59	-1	466504..467214	+	236	170080084	ylbH	ECDH10B_0456	-	protein, rhs-like protein
422	 50.27	0	468200..468571	-	123	170080085	ylbG	ECDH10B_0458	-	DNA-binding transcriptional regulator
423	 55.62	0	468687..469781	-	364	170080086	ybbB	ECDH10B_0459	-	tRNA 2-selenouridine synthase, selenophosphate-dependent
424	 52.43	0	469850..470776	-	308	170080087	allS	ECDH10B_0460	-	DNA-binding transcriptional activator of the allD operon
425	 51.14	0	471006..471488	+	160	170080088	allA	ECDH10B_0461	-	ureidoglycolate hydrolase
426	 52.57	0	471566..472381	+	271	170080089	allR	ECDH10B_0462	-	DNA-binding transcriptional repressor
427	 52.92	0	472471..474252	+	593	170080090	gcl	ECDH10B_0463	-	glyoxylate carboligase
428	 44.66	-1	474265..475041	+	258	170080091	hyi	ECDH10B_0464	-	hydroxypyruvate isomerase
429	 50.74	0	475141..476019	+	292	170080092	glxR	ECDH10B_0465	-	tartronate semialdehyde reductase, NADH-dependent
430	 35.48	-2	476051..476329	+	92	170080093	ybbV	ECDH10B_0466	-	hypothetical protein
431	 47.01	0	476188..477642	+	484	170080094	ybbW	ECDH10B_0467	-	allantoin transporter
432	 51.62	0	477702..479063	+	453	170080095	allB	ECDH10B_0468	-	allantoinase
433	 51.23	0	479120..480421	+	433	170080096	ybbY	ECDH10B_0469	-	uracil/xanthine transporter
434	 55.58	0	480443..481588	+	381	170080097	glxK	ECDH10B_0470	-	glycerate kinase II
435	 46.18	-1	481816..482601	-	261	170080098	ylbA	ECDH10B_0471	-	hypothetical protein
436	 51.38	0	482612..483847	-	411	170080099	allC	ECDH10B_0472	-	allantoate amidohydrolase
437	 52.38	0	483869..484918	-	349	170080100	allD	ECDH10B_0473	-	ureidoglycolate dehydrogenase
438	 55.58	0	485235..486902	+	555	170080101	fdrA	ECDH10B_0474	-	acyl-CoA synthetase
439	 57.22	+1	486912..488171	+	419	170080102	ylbE	ECDH10B_0475	-	hypothetical protein
440	 56.86	+1	488182..488997	+	271	170080103	ylbF	ECDH10B_0476	-	hypothetical protein
441	 56.94	+1	488994..489887	+	297	170080104	ybcF	ECDH10B_0477	-	carbamate kinase
442	 56.46	+1	490082..491149	-	355	170080105	purK	ECDH10B_0478	-	N5-carboxyaminoimidazole ribonucleotide synthase
443	 59.02	+1	491146..491655	-	169	170080106	purE	ECDH10B_0479	-	N5-carboxyaminoimidazole ribonucleotide mutase
444	 54.50	0	491773..492495	-	240	170080107	lpxH	ECDH10B_0480	-	UDP-2,3-diacylglucosamine pyrophosphatase
445	 47.88	0	492498..492992	-	164	170080108	ppiB	ECDH10B_0481	-	peptidyl-prolyl cis-trans isomerase B (rotamase B)
446	 54.47	0	493166..494551	+	461	170080109	cysS	ECDH10B_0482	-	cysteinyl-tRNA synthetase
447	 53.07	0	494587..495108	-	173	170080110	ybcI	ECDH10B_0483	-	inner membrane protein
448	 54.93	0	495216..495428	-	70	170080111	ybcJ	ECDH10B_0484	-	RNA-binding protein
449	 54.33	0	495430..496296	-	288	170080112	folD	ECDH10B_0485	-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase and 5,10-methylene-tetrahydrofolate cyclohydrolase
450	 44.57	-1	496767..497309	+	180	170080113	sfmA	ECDH10B_0486	-	fimbrial-like adhesin protein
451	 42.57	-1	497529..498221	+	230	170080114	sfmC	ECDH10B_0487	-	pilin chaperone, periplasmic
452	 47.81	0	498252..500855	+	867	170080115	sfmD	ECDH10B_0488	-	outer membrane export usher protein
453	 45.53	-1	500891..501874	+	327	170080116	sfmH	ECDH10B_0489	-	fimbrial-like adhesin protein
454	 50.00	0	501885..502400	+	171	170080117	sfmF	ECDH10B_0490	-	fimbrial-like adhesin protein
455	 36.65	-2	502403..503035	-	210	170080118	fimZ	ECDH10B_0491	-	DNA-binding transcriptional regulator
456	 46.91	0	503370..504533	-	387	170080119	intD	ECDH10B_0493	-	DLP12 prophage; integrase
457	 49.62	0	504653..504916	-	87	170080120	ybcC	ECDH10B_0494	-	DLP12 prophage; exonuclease
458	 50.16	0	505388..505696	+	102	170080121	insE-3	ECDH10B_0496	-	DLP12 prophage; IS3 element protein InsE
459	 55.13	0	505693..506559	+	288	170080122	insF-3	ECDH10B_0497	-	DLP12 prophage; IS3 element protein InsF
460	 48.92	0	506617..506802	+	61	170080123	renD	ECDH10B_0498	-	DLP12 prophage; hypothetical protein
461	 41.14	-2	506870..507202	+	110	170080124	emrE	ECDH10B_0499	-	DLP12 prophage; multidrug resistance protein
462	 35.56	-2	507457..508983	+	508	170080125	ybcK	ECDH10B_0500	-	DLP12 prophage; recombinase
463	 42.39	-1	509448..509999	+	183	170080126	ybcL	ECDH10B_0501	-	DLP12 prophage; kinase inhibitor
464	 36.22	-2	510009..510806	+	265	170080127	ybcM	ECDH10B_0502	-	DLP12 prophage; DNA-binding transcriptional regulator
465	 50.44	0	511021..511476	+	151	170080128	ybcN	ECDH10B_0503	-	DLP12 prophage; hypothetical protein
466	 48.54	0	511476..511646	+	56	170080129	ninE	ECDH10B_0504	-	DLP12 prophage; hypothetical protein
467	 53.26	0	511639..511929	+	96	170080130	ybcO	ECDH10B_0505	-	DLP12 prophage; hypothetical protein
468	 53.17	0	511926..512288	+	120	170080131	rusA	ECDH10B_0506	-	DLP12 prophage; endonuclease RUS
469	 47.52	0	512285..512425	+	46	170080132	ylcG	ECDH10B_0507	-	DLP12 prophage; hypothetical protein
470	 42.97	-1	512511..512894	+	127	170080133	ybcQ	ECDH10B_0508	-	DLP12 prophage; antitermination protein
471	 54.67	0	513292..514308	-	338	170080134	insH-2	ECDH10B_0510	-	DLP12 prophage; IS5 transposase and trans-activator
472	 47.69	0	515953..516168	+	71	170080135	essD	ECDH10B_0511	-	DLP12 prophage; phage lysis protein
473	 47.59	0	516168..516665	+	165	170080136	ybcS	ECDH10B_0512	-	DLP12 prophage; lysozyme
474	 51.30	0	516662..517123	+	153	170080137	rzpD	ECDH10B_0513	-	DLP12 prophage; murein endopeptidase
475	 56.83	+1	516882..517064	+	60	170080138	rzoD	ECDH10B_0514	-	DLP12 prophage; lipoprotein
476	 41.50	-2	517155..517448	-	97	170080139	borD	ECDH10B_0515	-	DLP12 prophage; lipoprotein
477	 31.63	-2	517739..518149	-	136	170080140	ybcV	ECDH10B_0516	-	DLP12 prophage; hypothetical protein
478	 39.61	-2	518435..518641	+	68	170080141	ybcW	ECDH10B_0517	-	DLP12 prophage; hypothetical protein