IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
4008	 49.84	0	4548347..4549303	+	318	170083671	ytfQ	ECDH10B_4422	-	sugar ABC transporter periplasmic-binding protein
4009	 55.56	0	4549443..4550945	+	500	170083672	ytfR	ECDH10B_4423	-	sugar ABC transporter ATP-binding protein
4010	 51.81	0	4553414..4554409	+	331	170083673	yjfF	ECDH10B_4426	-	sugar ABC transporter membrane protein
4011	 51.45	0	4554442..4555440	-	332	170083674	fbp	ECDH10B_4427	-	fructose-1,6-bisphosphatase I
4012	 55.31	0	4555616..4556989	+	457	170083675	mpl	ECDH10B_4428	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
4013	 52.90	0	4557145..4557696	-	183	170083676	yjgA	ECDH10B_4429	-	hypothetical protein
4014	 54.25	0	4557790..4559142	+	450	170083677	pmbA	ECDH10B_4430	-	peptidase required for the maturation and secretion of the antibiotic peptide MccB17
4015	 50.97	0	4559731..4560195	-	154	170083678	nrdG	ECDH10B_4432	-	anaerobic ribonucleotide reductase activating protein
4016	 53.53	0	4560353..4562491	-	712	170083679	nrdD	ECDH10B_4433	-	anaerobic ribonucleoside-triphosphate reductase
4017	 53.08	0	4562885..4564540	-	551	170083680	treC	ECDH10B_4434	-	trehalose-6-P hydrolase
4018	 54.36	0	4564590..4566011	-	473	170083681	treB	ECDH10B_4435	-	fused trehalose(maltose)-specific PTS enzyme: IIB component; IIC component
4019	 53.80	0	4566130..4567077	-	315	170083682	treR	ECDH10B_4436	-	DNA-binding transcriptional repressor
4020	 52.47	0	4567456..4570152	+	898	170083683	mgtA	ECDH10B_4437	-	magnesium transporter
4021	 52.97	0	4570358..4570744	-	128	170083684	yjgF	ECDH10B_4438	-	ketoacid-binding protein
4022	 48.48	0	4570817..4571278	-	153	170083685	pyrI	ECDH10B_4439	-	aspartate carbamoyltransferase, regulatory subunit
4023	 53.74	0	4571291..4572226	-	311	170083686	pyrB	ECDH10B_4440	-	aspartate carbamoyltransferase, catalytic subunit
4024	 50.37	0	4572230..4572364	-	44	170083687	pyrL	ECDH10B_4441	-	pyrBI operon leader peptide
4025	 47.22	0	4572645..4573040	-	131	170083688	yjgH	ECDH10B_4442	-	mRNA endoribonuclease
4026	 54.34	0	4573171..4573884	-	237	170083689	yjgI	ECDH10B_4443	-	oxidoreductase
4027	 49.16	0	4573955..4574548	+	197	170083690	yjgJ	ECDH10B_4444	-	transcriptional regulator
4028	 50.11	0	4574693..4575145	+	150	170083691	yjgK	ECDH10B_4445	-	hypothetical protein
4029	 32.18	-2	4575268..4577082	+	604	170083692	yjgL	ECDH10B_4446	-	hypothetical protein
4030	 52.14	0	4577138..4578142	-	334	170083693	argI	ECDH10B_4447	-	ornithine carbamoyltransferase 1
4031	 48.92	0	4578304..4578720	+	138	170083694	rraB	ECDH10B_4448	-	ribonuclease E inhibitor protein
4032	 51.98	0	4578865..4579368	-	167	170083695	yjgM	ECDH10B_4449	-	acetyltransferase
4033	 37.09	-2	4579561..4580757	+	398	170083696	yjgN	ECDH10B_4450	-	inner membrane protein
4034	 54.59	0	4580813..4583668	-	951	170083697	valS	ECDH10B_4451	-	valyl-tRNA synthetase
4035	 54.05	0	4583668..4584111	-	147	170083698	holC	ECDH10B_4452	-	DNA polymerase III, chi subunit
4036	 55.29	0	4584271..4585782	-	503	170083699	pepA	ECDH10B_4453	-	aminopeptidase A, a cyteinylglycinase
4037	 54.77	0	4586049..4587149	+	366	170083700	yjgP	ECDH10B_4454	-	inner membrane protein
4038	 54.29	0	4587149..4588231	+	360	170083701	yjgQ	ECDH10B_4455	-	inner membrane protein
4039	 53.76	0	4588392..4589894	-	500	170083702	yjgR	ECDH10B_4456	-	ATPase
4040	 47.05	0	4589972..4590970	-	332	170083703	idnR	ECDH10B_4457	-	DNA-binding transcriptional repressor, 5-gluconate-binding
4041	 50.61	0	4591037..4592356	-	439	170083704	idnT	ECDH10B_4458	-	L-idonate and D-gluconate transporter
4042	 49.41	0	4592418..4593182	-	254	170083705	idnO	ECDH10B_4459	-	5-keto-D-gluconate-5-reductase
4043	 47.38	0	4593206..4594237	-	343	170083706	idnD	ECDH10B_4460	-	L-idonate 5-dehydrogenase, NAD-binding
4044	 43.44	-1	4594454..4595017	+	187	170083707	idnK	ECDH10B_4461	-	D-gluconate kinase, thermosensitive
4045	 55.59	0	4595021..4596040	-	339	170083708	yjgB	ECDH10B_4462	-	Zn-dependent/NAD(P)-binding alcohol dehydrogenase
4046	 45.76	-1	4596581..4597771	+	396	170083709	intB	ECDH10B_4464	-	KpLE2 phage-like element; integrase
4047	 50.85	0	4598058..4598468	+	136	170083710	insC-6	ECDH10B_4465	-	KpLE2 phage-like element; IS2 insertion element repressor InsA
4048	 55.08	0	4598426..4599331	+	301	170083711	insD-6	ECDH10B_4466	-	KpLE2 phage-like element; IS2 insertion element transposase InsAB'
4049	 46.13	-1	4599430..4599765	+	111	170083712	yjgW	ECDH10B_4467	-	KpLE2 phage-like element; protein
4050	 58.18	+1	4601091..4601420	+	109	170083713	yjgZ	ECDH10B_4472	-	KpLE2 phage-like element; protein
4051	 54.18	0	4601934..4603262	-	442	170083714	insG	ECDH10B_4473	-	KpLE2 phage-like element; IS4 transposase
4052	 36.29	-2	4603889..4605106	+	405	170083715	yjhB	ECDH10B_4474	-	KpLE2 phage-like element; transporter
4053	 38.70	-2	4605118..4606236	+	372	170083716	yjhC	ECDH10B_4475	-	KpLE2 phage-like element; oxidoreductase
4054	 43.07	-1	4607028..4607294	+	88	170083717	insN-2	ECDH10B_4478	-	KpLE2 phage-like element; partial regulator of insertion element IS911B
4055	 45.83	-1	4607297..4608448	-	383	170083718	insI-3	ECDH10B_4479	-	KpLE2 phage-like element; IS30 transposase
4056	 55.28	0	4608789..4609385	+	198	170083719	insO-2	ECDH10B_4481	-	KpLE2 phage-like element; partial transposase of insertion element IS911B
4057	 52.17	0	4609551..4609964	+	137	170083720	yjhV	ECDH10B_4484	-	KpLE2 phage-like element; protein
4058	 54.04	0	4610521..4611288	-	255	170083721	fecE	ECDH10B_4485	-	KpLE2 phage-like iron-dicitrate ABC transporter ATP-binding protein
4059	 59.77	+1	4611289..4612245	-	318	170083722	fecD	ECDH10B_4486	-	KpLE2 phage-like iron-dicitrate ABC transporter membrane protein
4060	 60.66	+2	4612242..4613240	-	332	170083723	fecC	ECDH10B_4487	-	KpLE2 phage-like iron-dicitrate ABC transporter membrane protein
4061	 57.70	+1	4613237..4614139	-	300	170083724	fecB	ECDH10B_4488	-	KpLE2 phage-like iron-dicitrate ABC transporter periplasmic-binding protein
4062	 58.54	+1	4614184..4616508	-	774	170083725	fecA	ECDH10B_4489	-	KpLE2 phage-like element; ferric citrate outer membrane transporter
4063	 59.01	+1	4616595..4617548	-	317	170083726	fecR	ECDH10B_4490	-	KpLE2 phage-like element; transmembrane signal transducer for ferric citrate transport
4064	 54.60	0	4617545..4618066	-	173	170083727	fecI	ECDH10B_4491	-	KpLE2 phage-like element; RNA polymerase, sigma 19 factor
4065	 52.90	0	4618358..4618633	+	91	170083728	insA-7	ECDH10B_4492	-	KpLE2 phage-like element; IS1 repressor protein InsA
4066	 50.35	0	4619169..4620155	-	328	170083729	yjhU	ECDH10B_4496	-	KpLE2 phage-like element; DNA-binding transcriptional regulator
4067	 49.04	0	4620502..4621851	-	449	170083730	yjhF	ECDH10B_4497	-	KpLE2 phage-like element; transporter
4068	 54.52	0	4621958..4623925	-	655	170083731	yjhG	ECDH10B_4498	-	KpLE2 phage-like element; dehydratase
4069	 52.65	0	4623936..4624841	-	301	170083732	yjhH	ECDH10B_4499	-	KpLE2 phage-like element; lyase/synthase
4070	 40.81	-2	4624846..4625634	-	262	170083733	yjhI	ECDH10B_4500	-	KpLE2 phage-like element; DNA-binding transcriptional regulator
4071	 49.68	0	4625937..4626719	-	260	170083734	sgcR	ECDH10B_4501	-	KpLE2 phage-like element; DNA-binding transcriptional regulator
4072	 55.45	0	4626736..4627368	-	210	170083735	sgcE	ECDH10B_4502	-	KpLE2 phage-like element; epimerase
4073	 54.40	0	4627380..4627811	-	143	170083736	sgcA	ECDH10B_4503	-	KpLE2 phage-like element; phosphotransferase enzyme IIA component
4074	 53.28	0	4627942..4628748	-	268	170083737	sgcQ	ECDH10B_4504	-	KpLE2 phage-like element; nucleoside triphosphatase
4075	 51.75	0	4628761..4630074	-	437	170083738	sgcC	ECDH10B_4505	-	KpLE2 phage-like element; phosphotransferase enzyme IIC component
4076	 48.39	0	4630086..4630364	-	92	170083739	sgcB	ECDH10B_4506	-	enzyme IIB component of PTS
4077	 52.41	0	4630361..4631482	-	373	170083740	sgcX	ECDH10B_4507	-	KpLE2 phage-like element
4078	 59.57	+1	4632268..4633014	-	248	170083741	yjhP	ECDH10B_4508	-	KpLE2 phage-like element; methyltransferase
4079	 55.31	0	4633070..4633615	-	181	170083742	yjhQ	ECDH10B_4509	-	KpLE2 phage-like element; acetyltransferase
4080	 49.61	0	4633627..4633884	-	85	170083743	yjhX	ECDH10B_4510	-	hypothetical protein
4081	 48.73	0	4636445..4637425	-	326	170083744	yjhS	ECDH10B_4512	-	hypothetical protein
4082	 44.17	-1	4637490..4638596	-	368	170083745	yjhT	ECDH10B_4513	-	hypothetical protein
4083	 42.96	-1	4638616..4639332	-	238	170083746	yjhA	ECDH10B_4514	-	N-acetylnuraminic acid outer membrane channel protein
4084	 50.51	0	4644180..4644674	-	164	170083747	yjjA	ECDH10B_4516	-	hypothetical protein
4085	 50.54	0	4644723..4645460	-	245	170083748	dnaC	ECDH10B_4517	-	DNA biosynthesis protein
4086	 57.04	+1	4645463..4646002	-	179	170083749	dnaT	ECDH10B_4518	-	DNA biosynthesis protein (primosomal protein I)
4087	 48.01	0	4646109..4646435	-	108	170083750	yjjB	ECDH10B_4519	-	inner membrane protein
4088	 51.62	0	4646573..4647343	-	256	170083751	yjjP	ECDH10B_4520	-	inner membrane protein
4089	 45.04	-1	4647962..4648687	+	241	170083752	yjjQ	ECDH10B_4521	-	DNA-binding transcriptional regulator
4090	 45.67	-1	4648699..4649322	+	207	170083753	bglJ	ECDH10B_4522	-	DNA-binding transcriptional activator
4091	 53.11	0	4649360..4650148	-	262	170083754	fhuF	ECDH10B_4523	-	ferric iron reductase involved in ferric hydroximate transport
4092	 48.10	0	4650289..4650525	+	78	170083755	yjjZ	ECDH10B_4524	-	hypothetical protein
4093	 55.72	0	4651154..4652185	-	343	170083756	rsmC	ECDH10B_4528	-	16S RNA m2G1207 methylase
4094	 57.73	+1	4652288..4652701	+	137	170083757	holD	ECDH10B_4529	-	DNA polymerase III, psi subunit
4095	 52.35	0	4652670..4653116	+	148	170083758	rimI	ECDH10B_4530	-	acetylase for 30S ribosomal subunit protein S18
4096	 53.54	0	4653131..4653808	+	225	170083759	yjjG	ECDH10B_4531	-	hydrolase
4097	 54.03	0	4653899..4655488	+	529	170083760	prfC	ECDH10B_4532	-	peptide chain release factor RF-3
4098	 51.65	0	4655881..4656486	+	201	170083761	osmY	ECDH10B_4533	-	periplasmic protein
4099	 51.11	0	4656595..4656774	+	59