IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3970	 54.31	0	4512660..4514285	+	541	170083633	aidB	ECDH10B_4382	-	isovaleryl CoA dehydrogenase
3971	 51.09	0	4514402..4514677	-	91	170083634	yjfN	ECDH10B_4383	-	hypothetical protein
3972	 48.79	0	4514826..4515155	-	109	170083635	yjfO	ECDH10B_4384	-	hypothetical protein
3973	 53.20	0	4515337..4516086	+	249	170083636	yjfP	ECDH10B_4385	-	hydrolase
3974	 50.66	0	4516083..4516838	-	251	170083637	ulaR	ECDH10B_4386	-	DNA-binding transcriptional dual regulator
3975	 52.21	0	4516946..4518010	-	354	170083638	ulaG	ECDH10B_4387	-	L-ascorbate 6-phosphate lactonase
3976	 53.08	0	4518365..4519762	+	465	170083639	ulaA	ECDH10B_4388	-	L-ascorbate-specific enzyme IIC component of PTS
3977	 50.65	0	4519778..4520083	+	101	170083640	ulaB	ECDH10B_4389	-	L-ascorbate-specific enzyme IIB component of PTS
3978	 53.98	0	4520093..4520557	+	154	170083641	ulaC	ECDH10B_4390	-	L-ascorbate-specific enzyme IIA component of PTS
3979	 57.14	+1	4520571..4521221	+	216	170083642	ulaD	ECDH10B_4391	-	3-keto-L-gulonate 6-phosphate decarboxylase
3980	 56.73	+1	4521231..4522085	+	284	170083643	ulaE	ECDH10B_4392	-	L-xylulose 5-phosphate 3-epimerase
3981	 57.21	+1	4522085..4522771	+	228	170083644	ulaF	ECDH10B_4393	-	L-ribulose 5-phosphate 4-epimerase
3982	 46.01	-1	4522901..4523176	-	91	170083645	yjfY	ECDH10B_4394	-	hypothetical protein
3983	 52.53	0	4523503..4523898	+	131	170083646	rpsF	ECDH10B_4395	-	30S ribosomal subunit protein S6
3984	 52.63	0	4524224..4524451	+	75	170083647	rpsR	ECDH10B_4397	-	30S ribosomal subunit protein S18
3985	 49.78	0	4524493..4524942	+	149	170083648	rplI	ECDH10B_4398	-	50S ribosomal subunit protein L9
3986	 42.39	-1	4525013..4525807	-	264	170083649	yjfZ	ECDH10B_4399	-	hypothetical protein
3987	 42.20	-1	4526154..4526480	+	108	170083650	ytfA	ECDH10B_4400	-	transcriptional regulator
3988	 55.71	0	4526464..4527102	-	212	170083651	ytfB	ECDH10B_4401	-	cell envelope opacity-associated protein
3989	 55.72	0	4527320..4527940	+	206	170083652	fklB	ECDH10B_4402	-	FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)
3990	 52.58	0	4528249..4529661	+	470	170083653	cycA	ECDH10B_4403	-	D-alanine/D-serine/glycine transporter
3991	 53.09	0	4529706..4530368	-	220	170083654	ytfE	ECDH10B_4404	-	regulator of cell morphogenesis and cell wall metabolism
3992	 55.49	0	4530476..4531450	-	324	170083655	ytfF	ECDH10B_4405	-	inner membrane protein
3993	 54.24	0	4531549..4532409	-	286	170083656	ytfG	ECDH10B_4406	-	NAD(P)H:quinone oxidoreductase
3994	 56.17	+1	4532498..4532878	+	126	170083657	ytfH	ECDH10B_4407	-	transcriptional regulator
3995	 49.49	0	4533007..4534950	-	647	170083658	cpdB	ECDH10B_4408	-	2':3'-cyclic-nucleotide 2'-phosphodiesterase
3996	 36.10	-2	4536092..4537030	+	312	170083659	ytfI	ECDH10B_4410	-	hypothetical protein
3997	 52.43	0	4537093..4537647	-	184	170083660	ytfJ	ECDH10B_4411	-	transcriptional regulator
3998	 43.48	-1	4537972..4538178	+	68	170083661	ytfK	ECDH10B_4412	-	hypothetical protein
3999	 50.74	0	4538257..4539600	-	447	170083662	ytfL	ECDH10B_4413	-	inner membrane protein
4000	 54.46	0	4539923..4540561	-	212	170083663	msrA	ECDH10B_4414	-	methionine sulfoxide reductase A
4001	 53.34	0	4540767..4542500	+	577	170083664	ytfM	ECDH10B_4415	-	outer membrane protein and surface antigen
4002	 55.00	0	4542497..4546276	+	1259	170083665	ytfN	ECDH10B_4416	-	hypothetical protein
4003	 51.46	0	4546279..4546620	+	113	170083666	ytfP	ECDH10B_4417	-	hypothetical protein
4004	 52.22	0	4546361..4546630	-	89	170083667	yzfA	ECDH10B_4418	-	hypothetical protein
4005	 50.40	0	4546832..4547083	+	83	170083668	chpS	ECDH10B_4419	-	antitoxin of the ChpB-ChpS toxin-antitoxin system
4006	 53.85	0	4547077..4547427	+	116	170083669	chpB	ECDH10B_4420	-	toxin of the ChpB-ChpS toxin-antitoxin system
4007	 51.22	0	4547507..4548037	-	176	170083670	ppa	ECDH10B_4421	-	inorganic pyrophosphatase
4008	 49.84	0	4548347..4549303	+	318	170083671	ytfQ	ECDH10B_4422	-	sugar ABC transporter periplasmic-binding protein
4009	 55.56	0	4549443..4550945	+	500	170083672	ytfR	ECDH10B_4423	-	sugar ABC transporter ATP-binding protein
4010	 51.81	0	4553414..4554409	+	331	170083673	yjfF	ECDH10B_4426	-	sugar ABC transporter membrane protein
4011	 51.45	0	4554442..4555440	-	332	170083674	fbp	ECDH10B_4427	-	fructose-1,6-bisphosphatase I
4012	 55.31	0	4555616..4556989	+	457	170083675	mpl	ECDH10B_4428	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
4013	 52.90	0	4557145..4557696	-	183	170083676	yjgA	ECDH10B_4429	-	hypothetical protein
4014	 54.25	0	4557790..4559142	+	450	170083677	pmbA	ECDH10B_4430	-	peptidase required for the maturation and secretion of the antibiotic peptide MccB17
4015	 50.97	0	4559731..4560195	-	154	170083678	nrdG	ECDH10B_4432	-	anaerobic ribonucleotide reductase activating protein
4016	 53.53	0	4560353..4562491	-	712	170083679	nrdD	ECDH10B_4433	-	anaerobic ribonucleoside-triphosphate reductase
4017	 53.08	0	4562885..4564540	-	551	170083680	treC	ECDH10B_4434	-	trehalose-6-P hydrolase
4018	 54.36	0	4564590..4566011	-	473	170083681	treB	ECDH10B_4435	-	fused trehalose(maltose)-specific PTS enzyme: IIB component; IIC component
4019	 53.80	0	4566130..4567077	-	315	170083682	treR	ECDH10B_4436	-	DNA-binding transcriptional repressor
4020	 52.47	0	4567456..4570152	+	898	170083683	mgtA	ECDH10B_4437	-	magnesium transporter
4021	 52.97	0	4570358..4570744	-	128	170083684	yjgF	ECDH10B_4438	-	ketoacid-binding protein
4022	 48.48	0	4570817..4571278	-	153	170083685	pyrI	ECDH10B_4439	-	aspartate carbamoyltransferase, regulatory subunit
4023	 53.74	0	4571291..4572226	-	311	170083686	pyrB	ECDH10B_4440	-	aspartate carbamoyltransferase, catalytic subunit
4024	 50.37	0	4572230..4572364	-	44	170083687	pyrL	ECDH10B_4441	-	pyrBI operon leader peptide
4025	 47.22	0	4572645..4573040	-	131	170083688	yjgH	ECDH10B_4442	-	mRNA endoribonuclease
4026	 54.34	0	4573171..4573884	-	237	170083689	yjgI	ECDH10B_4443	-	oxidoreductase
4027	 49.16	0	4573955..4574548	+	197	170083690	yjgJ	ECDH10B_4444	-	transcriptional regulator
4028	 50.11	0	4574693..4575145	+	150	170083691	yjgK	ECDH10B_4445	-	hypothetical protein
4029	 32.18	-2	4575268..4577082	+	604	170083692	yjgL	ECDH10B_4446	-	hypothetical protein
4030	 52.14	0	4577138..4578142	-	334	170083693	argI	ECDH10B_4447	-	ornithine carbamoyltransferase 1
4031	 48.92	0	4578304..4578720	+	138	170083694	rraB	ECDH10B_4448	-	ribonuclease E inhibitor protein
4032	 51.98	0	4578865..4579368	-	167	170083695	yjgM	ECDH10B_4449	-	acetyltransferase
4033	 37.09	-2	4579561..4580757	+	398	170083696	yjgN	ECDH10B_4450	-	inner membrane protein
4034	 54.59	0	4580813..4583668	-	951	170083697	valS	ECDH10B_4451	-	valyl-tRNA synthetase
4035	 54.05	0	4583668..4584111	-	147	170083698	holC	ECDH10B_4452	-	DNA polymerase III, chi subunit
4036	 55.29	0	4584271..4585782	-	503	170083699	pepA	ECDH10B_4453	-	aminopeptidase A, a cyteinylglycinase
4037	 54.77	0	4586049..4587149	+	366	170083700	yjgP	ECDH10B_4454	-	inner membrane protein
4038	 54.29	0	4587149..4588231	+	360	170083701	yjgQ	ECDH10B_4455	-	inner membrane protein
4039	 53.76	0	4588392..4589894	-	500	170083702	yjgR	ECDH10B_4456	-	ATPase
4040	 47.05	0	4589972..4590970	-	332	170083703	idnR	ECDH10B_4457	-	DNA-binding transcriptional repressor, 5-gluconate-binding
4041	 50.61	0	4591037..4592356	-	439	170083704	idnT	ECDH10B_4458	-	L-idonate and D-gluconate transporter
4042	 49.41	0	4592418..4593182	-	254	170083705	idnO	ECDH10B_4459	-	5-keto-D-gluconate-5-reductase
4043	 47.38	0	4593206..4594237	-	343	170083706	idnD	ECDH10B_4460	-	L-idonate 5-dehydrogenase, NAD-binding
4044	 43.44	-1	4594454..4595017	+	187	170083707	idnK	ECDH10B_4461	-	D-gluconate kinase, thermosensitive
4045	 55.59	0	4595021..4596040	-	339	170083708	yjgB	ECDH10B_4462	-	Zn-dependent/NAD(P)-binding alcohol dehydrogenase
4046	 45.76	-1	4596581..4597771	+	396	170083709	intB	ECDH10B_4464	-	KpLE2 phage-like element; integrase
4047	 50.85	0	4598058..4598468	+	136	170083710	insC-6	ECDH10B_4465	-	KpLE2 phage-like element; IS2 insertion element repressor InsA
4048	 55.08	0	4598426..4599331	+	301	170083711	insD-6	ECDH10B_4466	-	KpLE2 phage-like element; IS2 insertion element transposase InsAB'
4049	 46.13	-1	4599430..4599765	+	111	170083712	yjgW	ECDH10B_4467	-	KpLE2 phage-like element; protein
4050	 58.18	+1	4601091..4601420	+	109	170083713	yjgZ	ECDH10B_4472	-	KpLE2 phage-like element; protein
4051	 54.18	0	4601934..4603262	-	442	170083714	insG	ECDH10B_4473	-	KpLE2 phage-like element; IS4 transposase
4052	 36.29	-2	4603889..4605106	+	405	170083715	yjhB	ECDH10B_4474	-	KpLE2 phage-like element; transporter
4053	 38.70	-2	4605118..4606236	+	372	170083716	yjhC	ECDH10B_4475	-	KpLE2 phage-like element; oxidoreductase
4054	 43.07	-1	4607028..4607294	+	88	170083717	insN-2	ECDH10B_4478	-	KpLE2 phage-like element; partial regulator of insertion element IS911B
4055	 45.83	-1	4607297..4608448	-	383	170083718	insI-3	ECDH10B_4479	-	KpLE2 phage-like element; IS30 transposase
4056	 55.28	0	4608789..4609385	+	198	170083719	insO-2	ECDH10B_4481	-	KpLE2 phage-like element; partial transposase of insertion element IS911B
4057	 52.17	0	4609551..4609964	+	137	170083720	yjhV	ECDH10B_4484	-	KpLE2 phage-like element; protein
4058	 54.04	0	4610521..4611288	-	255	170083721	fecE	ECDH10B_4485	-	KpLE2 phage-like iron-dicitrate ABC transporter ATP-binding protein
4059	 59.77	+1	4611289..4612245	-	318	170083722	fecD	ECDH10B_4486	-	KpLE2 phage-like iron-dicitrate ABC transporter membrane protein
4060	 60.66	+2	4612242..4613240	-	332	170083723	fecC	ECDH10B_4487	-	KpLE2 phage-like iron-dicitrate ABC transporter membrane protein
4061	 57.70	+1	4613237..4614139	-	300	170083724	fecB	ECDH10B_4488	-	KpLE2 phage-like iron-dicitrate ABC transporter periplasmic-binding protein
4062	 58.54	+1	4614184..4616508	-	774