IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3851	 50.42	0	4368377..4368733	+	118	170083514	yjbR	ECDH10B_4246	-	hypothetical protein
3852	 58.10	+1	4371844..4372380	+	178	170083515	ssb	ECDH10B_4248	-	single-stranded DNA-binding protein
3853	 52.48	0	4372479..4372760	-	93	170083516	yjcB	ECDH10B_4249	-	inner membrane protein
3854	 50.93	0	4374779..4375102	-	107	170083517	soxS	ECDH10B_4251	-	DNA-binding transcriptional dual regulator
3855	 52.04	0	4375188..4375652	+	154	170083518	soxR	ECDH10B_4252	-	DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing
3856	 55.93	+1	4376198..4377547	+	449	170083519	yjcD	ECDH10B_4254	-	permease
3857	 55.82	0	4377699..4379348	+	549	170083520	yjcE	ECDH10B_4255	-	cation/proton antiporter
3858	 32.95	-2	4379502..4380794	-	430	170083521	yjcF	ECDH10B_4256	-	hypothetical protein
3859	 55.76	0	4380972..4382621	-	549	170083522	actP	ECDH10B_4257	-	acetate transporter
3860	 49.21	0	4382618..4382932	-	104	170083523	yjcH	ECDH10B_4258	-	inner membrane protein involved in acetate transport
3861	 56.87	+1	4383132..4385090	-	652	170083524	acs	ECDH10B_4259	-	acetyl-CoA synthetase
3862	 52.26	0	4385483..4386919	+	478	170083525	nrfA	ECDH10B_4260	-	nitrite reductase, formate-dependent, cytochrome
3863	 57.89	+1	4388304..4388975	+	223	170083526	nrfC	ECDH10B_4263	-	formate-dependent nitrite reductase, 4Fe4S subunit
3864	 57.58	+1	4388972..4389928	+	318	170083527	nrfD	ECDH10B_4264	-	formate-dependent nitrite reductase, membrane subunit
3865	 57.32	+1	4390008..4391666	+	552	170083528	nrfE	ECDH10B_4265	-	heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
3866	 52.34	0	4391659..4392042	+	127	170083529	nrfF	ECDH10B_4266	-	heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF
3867	 51.76	0	4392039..4392635	+	198	170083530	nrfG	ECDH10B_4267	-	heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG
3868	 53.27	0	4392977..4394290	+	437	170083531	gltP	ECDH10B_4268	-	glutamate/aspartate:proton symporter
3869	 49.71	0	4394821..4395510	-	229	170083532	yjcO	ECDH10B_4269	-	hypothetical protein
3870	 54.38	0	4395604..4397751	-	715	170083533	fdhF	ECDH10B_4270	-	formate dehydrogenase-H, selenopolypeptide subunit
3871	 55.76	0	4397949..4399415	-	488	170083534	yjcP	ECDH10B_4271	-	outer membrane factor of efflux pump
3872	 54.53	0	4399412..4401463	-	683	170083535	yjcQ	ECDH10B_4272	-	multidrug efflux system component
3873	 55.91	+1	4401463..4402494	-	343	170083536	yjcR	ECDH10B_4273	-	membrane fusion protein of efflux pump
3874	 52.92	0	4402997..4404982	-	661	170083537	yjcS	ECDH10B_4274	-	alkyl sulfatase
3875	 54.95	0	4405255..4406184	-	309	170083538	alsK	ECDH10B_4275	-	D-allose kinase
3876	 49.14	0	4406168..4406863	-	231	170083539	alsE	ECDH10B_4276	-	allulose-6-phosphate 3-epimerase
3877	 52.50	0	4406874..4407854	-	326	170083540	alsC	ECDH10B_4277	-	D-allose ABC transporter membrane protein
3878	 47.95	0	4407833..4409365	-	510	170083541	alsA	ECDH10B_4278	-	D-allose ABC transporter ATP-binding protein
3879	 48.50	0	4409492..4410427	-	311	170083542	alsB	ECDH10B_4279	-	D-allose ABC transporter periplasmic-binding protein
3880	 47.47	0	4410486..4411376	-	296	170083543	rpiR	ECDH10B_4280	-	DNA-binding transcriptional repressor
3881	 50.22	0	4411735..4412184	+	149	170083544	rpiB	ECDH10B_4281	-	ribose 5-phosphate isomerase B/allose 6-phosphate isomerase
3882	 56.06	+1	4412253..4412582	+	109	170083545	yjdP	ECDH10B_4282	-	hypothetical protein
3883	 59.29	+1	4412729..4413487	-	252	170083546	phnP	ECDH10B_4283	-	carbon-phosphorus lyase complex accessory protein
3884	 57.93	+1	4413489..4413923	-	144	170083547	phnO	ECDH10B_4284	-	acyltransferase
3885	 60.22	+1	4413910..4414467	-	185	170083548	phnN	ECDH10B_4285	-	ribose 1,5-bisphosphokinase
3886	 61.30	+2	4414467..4415603	-	378	170083549	phnM	ECDH10B_4286	-	carbon-phosphorus lyase complex subunit
3887	 60.21	+1	4415600..4416280	-	226	170083550	phnL	ECDH10B_4287	-	carbon-phosphorus lyase complex subunit
3888	 61.40	+2	4416391..4417149	-	252	170083551	phnK	ECDH10B_4288	-	carbon-phosphorus lyase complex subunit
3889	 58.27	+1	4417146..4417991	-	281	170083552	phnJ	ECDH10B_4289	-	carbon-phosphorus lyase complex subunit
3890	 62.63	+2	4417984..4419048	-	354	170083553	phnI	ECDH10B_4290	-	carbon-phosphorus lyase complex subunit
3891	 60.85	+2	4419048..4419632	-	194	170083554	phnH	ECDH10B_4291	-	carbon-phosphorus lyase complex subunit
3892	 62.69	+2	4419629..4420081	-	150	170083555	phnG	ECDH10B_4292	-	carbon-phosphorus lyase complex subunit
3893	 61.85	+2	4420082..4420807	-	241	170083556	phnF	ECDH10B_4293	-	DNA-binding transcriptional regulator of phosphonate uptake and biodegradation
3894	 55.46	0	4421721..4422737	-	338	170083557	phnD	ECDH10B_4297	-	phosphonate/organophosphate ester ABC transporter periplasmic-binding protein
3895	 58.56	+1	4422762..4423550	-	262	170083558	phnC	ECDH10B_4298	-	phosphonate/organophosphate ester ABC transporter ATP-binding protein
3896	 51.58	0	4423683..4424126	-	147	170083559	phnB	ECDH10B_4299	-	hypothetical protein
3897	 46.43	0	4424784..4425119	-	111	170083560	phnA	ECDH10B_4300	-	hypothetical protein
3898	 51.46	0	4425520..4427748	+	742	170083561	yjdA	ECDH10B_4301	-	hypothetical protein
3899	 56.88	+1	4427745..4428623	+	292	170083562	yjcZ	ECDH10B_4302	-	hypothetical protein
3900	 50.43	0	4428887..4430389	+	500	170083563	proP	ECDH10B_4303	-	proline/glycine betaine transporter
3901	 54.21	0	4430566..4431657	-	363	170083564	basS	ECDH10B_4304	-	sensory histidine kinase in two-component regulatory system with BasR
3902	 53.21	0	4431667..4432335	-	222	170083565	basR	ECDH10B_4305	-	DNA-binding response regulator in two-component regulatory system with BasS
3903	 49.45	0	4432332..4433975	-	547	170083566	eptA	ECDH10B_4306	-	metal dependent hydrolase
3904	 53.74	0	4434079..4435416	-	445	170083567	adiC	ECDH10B_4307	-	arginine:agmatin
3905	 50.28	0	4439105..4440013	-	302	170083568	melR	ECDH10B_4310	-	DNA-binding transcriptional dual regulator
3906	 52.43	0	4440296..4441651	+	451	170083569	melA	ECDH10B_4311	-	alpha-galactosidase, NAD(P)-binding
3907	 45.96	-1	4441766..4443175	+	469	170083570	melB	ECDH10B_4312	-	melibiose:sodium symporter
3908	 54.92	0	4443314..4443943	-	209	170083571	yjdF	ECDH10B_4313	-	inner membrane protein
3909	 54.64	0	4444065..4445711	-	548	170083572	fumB	ECDH10B_4314	-	anaerobic class I fumarate hydratase (fumarase B)
3910	 52.27	0	4445789..4447129	-	446	170083573	dcuB	ECDH10B_4315	-	C4-dicarboxylate antiporter
3911	 49.94	0	4448416..4450047	-	543	170083574	dcuS	ECDH10B_4317	-	sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration
3912	 48.92	0	4450228..4450458	+	76	170083575	yjdI	ECDH10B_4318	-	hypothetical protein
3913	 41.03	-2	4450470..4450742	+	90	170083576	yjdJ	ECDH10B_4319	-	acyltransferase
3914	 35.02	-2	4450969..4451265	+	98	170083577	yjdK	ECDH10B_4320	-	hypothetical protein
3915	 35.06	-2	4451293..4451466	+	57	170083578	yjdO	ECDH10B_4321	-	hypothetical protein
3916	 47.43	0	4451585..4453102	-	505	170083579	lysU	ECDH10B_4322	-	lysine tRNA synthetase, inducible
3917	 51.10	0	4453339..4454796	-	485	170083580	yjdL	ECDH10B_4323	-	transporter
3918	 47.58	0	4454855..4457002	-	715	170083581	cadA	ECDH10B_4324	-	lysine decarboxylase 1
3919	 49.44	0	4457082..4458416	-	444	170083582	cadB	ECDH10B_4325	-	lysine/cadaverine transporter
3920	 41.98	-1	4458781..4460319	-	512	170083583	cadC	ECDH10B_4326	-	DNA-binding transcriptional activator
3921	 53.12	0	4461118..4461693	-	191	170083584	yjdC	ECDH10B_4328	-	transcriptional regulator
3922	 54.42	0	4461730..4463427	-	565	170083585	dipZ	ECDH10B_4329	-	fused thiol:disulfide interchange protein: activator of DsbC; protein
3923	 50.15	0	4463403..4463741	-	112	170083586	cutA	ECDH10B_4330	-	copper binding protein, copper sensitivity
3924	 52.61	0	4463857..4465158	-	433	170083587	dcuA	ECDH10B_4331	-	C4-dicarboxylate antiporter
3925	 49.20	0	4465276..4466712	-	478	170083588	aspA	ECDH10B_4332	-	aspartate ammonia-lyase
3926	 47.38	0	4467049..4467525	+	158	170083589	fxsA	ECDH10B_4333	-	inner membrane protein
3927	 52.27	0	4467541..4468797	-	418	170083590	yjeH	ECDH10B_4334	-	transporter
3928	 48.64	0	4469073..4469366	+	97	170083591	groS	ECDH10B_4335	-	Cpn10 chaperonin GroES, small subunit of GroESL
3929	 52.88	0	4469410..4471056	+	548	170083592	groL	ECDH10B_4336	-	Cpn60 chaperonin GroEL, large subunit of GroESL
3930	 55.37	0	4471194..4471547	+	117	170083593	yjeI	ECDH10B_4337	-	hypothetical protein
3931	 45.17	-1	4471750..4472619	-	289	170083594	yjeJ	ECDH10B_4338	-	hypothetical protein
3932	 49.38	0	4474084..4474650	+	188	170083595	efp	ECDH10B_4340	-	elongation factor EF-P
3933	 53.97	0	4474702..4474827	+	41	170083596	ecnA	ECDH10B_4341	-	entericidin A membrane lipoprotein, antidote entericidin B
3934	 48.30	0	4474938..4475084	+	48	170083597	ecnB	ECDH10B_4342	-	entericidin B membrane lipoprotein
3935	 53.14	0	4475260..4475577	+	105	170083598	sugE	ECDH10B_4343	-	multidrug efflux system protein
3936	 53.37	0	4475574..4476107	-	177	170083599	blc	ECDH10B_4344	-	outer membrane lipoprotein (lipocalin)
3937	 50.18	0	4476196..4477329	-	377	170083600	ampC	ECDH10B_4345	-	beta-lactamase/D-alanine carboxypeptidase
3938	 54.44	0	4477392..4477751	-	119	170083601	frdD	ECDH10B_4346	-	fumarate reductase (anaerobic), membrane anchor subunit
3939	 49.24	0	4477762..4478157	-	131	170083602	frdC	ECDH10B_4347	-	fumarate reductase (anaerobic), membrane anchor subunit
3940	 56.38	+1	4478895..4480703	-	602	170083603	frdA	ECDH10B_4349	-	fumarate reductase (anaerobic) catalytic and NAD/flavoprotein subunit
3941	 52.66	0	4481028..4482005	+	325	170083604	poxA	ECDH10B_4350	-	lysyl-tRNA synthetase
3942	 47.11	0	4482224..4483726	+	500	170083605	yjeM	ECDH10B_4351	-	transporter
3943	 50.16	0	4483778..4484092	+	104