version 1.0
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137 4126 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3838 55.72 0 4355461..4356840 + 459 170083501 dinF ECDH10B_4233 - DNA-damage-inducible SOS response protein 3839 42.38 -1 4356956..4357165 + 69 170083502 yjbJ ECDH10B_4234 - stress response protein 3840 52.13 0 4357207..4357722 - 171 170083503 zur ECDH10B_4235 - DNA-binding transcriptional repressor, Zn(II)-binding 3841 28.63 -2 4358040..4358294 + 84 170083504 yjbL ECDH10B_4236 - hypothetical protein 3842 36.58 -2 4358318..4359025 + 235 170083505 yjbM ECDH10B_4237 - hypothetical protein 3843 53.66 0 4359388..4360425 + 345 170083506 dusA ECDH10B_4238 - tRNA-dihydrouridine synthase A 3844 49.79 0 4360559..4360801 + 80 170083507 yjbO ECDH10B_4239 - phage shock protein G 3845 53.05 0 4360967..4361950 - 327 170083508 qor ECDH10B_4240 - quinone oxidoreductase, NADPH-dependent 3846 53.81 0 4362033..4363448 + 471 170083509 dnaB ECDH10B_4241 - replicative DNA helicase 3847 55.93 +1 4363501..4364580 + 359 170083510 alr ECDH10B_4242 - alanine racemase 1, PLP-binding, biosynthetic 3848 52.76 0 4364833..4366026 + 397 170083511 tyrB ECDH10B_4243 - tyrosine aminotransferase, tyrosine-repressible, PLP-dependent 3849 49.44 0 4367133..4367846 + 237 170083512 aphA ECDH10B_4244 - acid phosphatase/phosphotransferase, class B, non-specific 3850 51.80 0 4367957..4368373 + 138 170083513 yjbQ ECDH10B_4245 - hypothetical protein 3851 50.42 0 4368377..4368733 + 118 170083514 yjbR ECDH10B_4246 - hypothetical protein 3852 58.10 +1 4371844..4372380 + 178 170083515 ssb ECDH10B_4248 - single-stranded DNA-binding protein 3853 52.48 0 4372479..4372760 - 93 170083516 yjcB ECDH10B_4249 - inner membrane protein 3854 50.93 0 4374779..4375102 - 107 170083517 soxS ECDH10B_4251 - DNA-binding transcriptional dual regulator 3855 52.04 0 4375188..4375652 + 154 170083518 soxR ECDH10B_4252 - DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing 3856 55.93 +1 4376198..4377547 + 449 170083519 yjcD ECDH10B_4254 - permease 3857 55.82 0 4377699..4379348 + 549 170083520 yjcE ECDH10B_4255 - cation/proton antiporter 3858 32.95 -2 4379502..4380794 - 430 170083521 yjcF ECDH10B_4256 - hypothetical protein 3859 55.76 0 4380972..4382621 - 549 170083522 actP ECDH10B_4257 - acetate transporter 3860 49.21 0 4382618..4382932 - 104 170083523 yjcH ECDH10B_4258 - inner membrane protein involved in acetate transport 3861 56.87 +1 4383132..4385090 - 652 170083524 acs ECDH10B_4259 - acetyl-CoA synthetase 3862 52.26 0 4385483..4386919 + 478 170083525 nrfA ECDH10B_4260 - nitrite reductase, formate-dependent, cytochrome 3863 57.89 +1 4388304..4388975 + 223 170083526 nrfC ECDH10B_4263 - formate-dependent nitrite reductase, 4Fe4S subunit 3864 57.58 +1 4388972..4389928 + 318 170083527 nrfD ECDH10B_4264 - formate-dependent nitrite reductase, membrane subunit 3865 57.32 +1 4390008..4391666 + 552 170083528 nrfE ECDH10B_4265 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE 3866 52.34 0 4391659..4392042 + 127 170083529 nrfF ECDH10B_4266 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF 3867 51.76 0 4392039..4392635 + 198 170083530 nrfG ECDH10B_4267 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG 3868 53.27 0 4392977..4394290 + 437 170083531 gltP ECDH10B_4268 - glutamate/aspartate:proton symporter 3869 49.71 0 4394821..4395510 - 229 170083532 yjcO ECDH10B_4269 - hypothetical protein 3870 54.38 0 4395604..4397751 - 715 170083533 fdhF ECDH10B_4270 - formate dehydrogenase-H, selenopolypeptide subunit 3871 55.76 0 4397949..4399415 - 488 170083534 yjcP ECDH10B_4271 - outer membrane factor of efflux pump 3872 54.53 0 4399412..4401463 - 683 170083535 yjcQ ECDH10B_4272 - multidrug efflux system component 3873 55.91 +1 4401463..4402494 - 343 170083536 yjcR ECDH10B_4273 - membrane fusion protein of efflux pump 3874 52.92 0 4402997..4404982 - 661 170083537 yjcS ECDH10B_4274 - alkyl sulfatase 3875 54.95 0 4405255..4406184 - 309 170083538 alsK ECDH10B_4275 - D-allose kinase 3876 49.14 0 4406168..4406863 - 231 170083539 alsE ECDH10B_4276 - allulose-6-phosphate 3-epimerase 3877 52.50 0 4406874..4407854 - 326 170083540 alsC ECDH10B_4277 - D-allose ABC transporter membrane protein 3878 47.95 0 4407833..4409365 - 510 170083541 alsA ECDH10B_4278 - D-allose ABC transporter ATP-binding protein 3879 48.50 0 4409492..4410427 - 311 170083542 alsB ECDH10B_4279 - D-allose ABC transporter periplasmic-binding protein 3880 47.47 0 4410486..4411376 - 296 170083543 rpiR ECDH10B_4280 - DNA-binding transcriptional repressor 3881 50.22 0 4411735..4412184 + 149 170083544 rpiB ECDH10B_4281 - ribose 5-phosphate isomerase B/allose 6-phosphate isomerase 3882 56.06 +1 4412253..4412582 + 109 170083545 yjdP ECDH10B_4282 - hypothetical protein 3883 59.29 +1 4412729..4413487 - 252 170083546 phnP ECDH10B_4283 - carbon-phosphorus lyase complex accessory protein 3884 57.93 +1 4413489..4413923 - 144 170083547 phnO ECDH10B_4284 - acyltransferase 3885 60.22 +1 4413910..4414467 - 185 170083548 phnN ECDH10B_4285 - ribose 1,5-bisphosphokinase 3886 61.30 +2 4414467..4415603 - 378 170083549 phnM ECDH10B_4286 - carbon-phosphorus lyase complex subunit 3887 60.21 +1 4415600..4416280 - 226 170083550 phnL ECDH10B_4287 - carbon-phosphorus lyase complex subunit 3888 61.40 +2 4416391..4417149 - 252 170083551 phnK ECDH10B_4288 - carbon-phosphorus lyase complex subunit 3889 58.27 +1 4417146..4417991 - 281 170083552 phnJ ECDH10B_4289 - carbon-phosphorus lyase complex subunit 3890 62.63 +2 4417984..4419048 - 354 170083553 phnI ECDH10B_4290 - carbon-phosphorus lyase complex subunit 3891 60.85 +2 4419048..4419632 - 194 170083554 phnH ECDH10B_4291 - carbon-phosphorus lyase complex subunit 3892 62.69 +2 4419629..4420081 - 150 170083555 phnG ECDH10B_4292 - carbon-phosphorus lyase complex subunit 3893 61.85 +2 4420082..4420807 - 241 170083556 phnF ECDH10B_4293 - DNA-binding transcriptional regulator of phosphonate uptake and biodegradation 3894 55.46 0 4421721..4422737 - 338 170083557 phnD ECDH10B_4297 - phosphonate/organophosphate ester ABC transporter periplasmic-binding protein 3895 58.56 +1 4422762..4423550 - 262 170083558 phnC ECDH10B_4298 - phosphonate/organophosphate ester ABC transporter ATP-binding protein 3896 51.58 0 4423683..4424126 - 147 170083559 phnB ECDH10B_4299 - hypothetical protein 3897 46.43 0 4424784..4425119 - 111 170083560 phnA ECDH10B_4300 - hypothetical protein 3898 51.46 0 4425520..4427748 + 742 170083561 yjdA ECDH10B_4301 - hypothetical protein 3899 56.88 +1 4427745..4428623 + 292 170083562 yjcZ ECDH10B_4302 - hypothetical protein 3900 50.43 0 4428887..4430389 + 500 170083563 proP ECDH10B_4303 - proline/glycine betaine transporter 3901 54.21 0 4430566..4431657 - 363 170083564 basS ECDH10B_4304 - sensory histidine kinase in two-component regulatory system with BasR 3902 53.21 0 4431667..4432335 - 222 170083565 basR ECDH10B_4305 - DNA-binding response regulator in two-component regulatory system with BasS 3903 49.45 0 4432332..4433975 - 547 170083566 eptA ECDH10B_4306 - metal dependent hydrolase 3904 53.74 0 4434079..4435416 - 445 170083567 adiC ECDH10B_4307 - arginine:agmatin 3905 50.28 0 4439105..4440013 - 302 170083568 melR ECDH10B_4310 - DNA-binding transcriptional dual regulator 3906 52.43 0 4440296..4441651 + 451 170083569 melA ECDH10B_4311 - alpha-galactosidase, NAD(P)-binding 3907 45.96 -1 4441766..4443175 + 469 170083570 melB ECDH10B_4312 - melibiose:sodium symporter 3908 54.92 0 4443314..4443943 - 209 170083571 yjdF ECDH10B_4313 - inner membrane protein 3909 54.64 0 4444065..4445711 - 548 170083572 fumB ECDH10B_4314 - anaerobic class I fumarate hydratase (fumarase B) 3910 52.27 0 4445789..4447129 - 446 170083573 dcuB ECDH10B_4315 - C4-dicarboxylate antiporter 3911 49.94 0 4448416..4450047 - 543 170083574 dcuS ECDH10B_4317 - sensory histidine kinase in two-component regulatory system with DcuR, regulator of anaerobic fumarate respiration 3912 48.92 0 4450228..4450458 + 76 170083575 yjdI ECDH10B_4318 - hypothetical protein 3913 41.03 -2 4450470..4450742 + 90 170083576 yjdJ ECDH10B_4319 - acyltransferase 3914 35.02 -2 4450969..4451265 + 98 170083577 yjdK ECDH10B_4320 - hypothetical protein 3915 35.06 -2 4451293..4451466 + 57 170083578 yjdO ECDH10B_4321 - hypothetical protein 3916 47.43 0 4451585..4453102 - 505 170083579 lysU ECDH10B_4322 - lysine tRNA synthetase, inducible 3917 51.10 0 4453339..4454796 - 485 170083580 yjdL ECDH10B_4323 - transporter 3918 47.58 0 4454855..4457002 - 715 170083581 cadA ECDH10B_4324 - lysine decarboxylase 1 3919 49.44 0 4457082..4458416 - 444 170083582 cadB ECDH10B_4325 - lysine/cadaverine transporter 3920 41.98 -1 4458781..4460319 - 512 170083583 cadC ECDH10B_4326 - DNA-binding transcriptional activator 3921 53.12 0 4461118..4461693 - 191 170083584 yjdC ECDH10B_4328 - transcriptional regulator 3922 54.42 0 4461730..4463427 - 565 170083585 dipZ ECDH10B_4329 - fused thiol:disulfide interchange protein: activator of DsbC; protein 3923 50.15 0 4463403..4463741 - 112 170083586 cutA ECDH10B_4330 - copper binding protein, copper sensitivity 3924 52.61 0 4463857..4465158 - 433 170083587 dcuA ECDH10B_4331 - C4-dicarboxylate antiporter 3925 49.20 0 4465276..4466712 - 478 170083588 aspA ECDH10B_4332 - aspartate ammonia-lyase 3926 47.38 0 4467049..4467525 + 158 170083589 fxsA ECDH10B_4333 - inner membrane protein 3927 52.27 0 4467541..4468797 - 418 170083590 yjeH ECDH10B_4334 - transporter 3928 48.64 0 4469073..4469366 + 97 170083591 groS ECDH10B_4335 - Cpn10 chaperonin GroES, small subunit of GroESL 3929 52.88 0 4469410..4471056 + 548 170083592 groL ECDH10B_4336 - Cpn60 chaperonin GroEL, large subunit of GroESL 3930 55.37 0 4471194..4471547 + 117 170083593 yjeI ECDH10B_4337 - hypothetical protein 3931 45.17 -1 4471750..4472619 - 289 170083594 yjeJ ECDH10B_4338 - hypothetical protein 3932 49.38 0 4474084..4474650 + 188 170083595 efp ECDH10B_4340 - elongation factor EF-P 3933 53.97 0 4474702..4474827 + 41 170083596 ecnA ECDH10B_4341 - entericidin A membrane lipoprotein, antidote entericidin B 3934 48.30 0 4474938..4475084 + 48 170083597 ecnB ECDH10B_4342 - entericidin B membrane lipoprotein 3935 53.14 0 4475260..4475577 + 105 170083598 sugE ECDH10B_4343 - multidrug efflux system protein 3936 53.37 0 4475574..4476107 - 177 170083599 blc ECDH10B_4344 - outer membrane lipoprotein (lipocalin) 3937 50.18 0 4476196..4477329 - 377 170083600 ampC ECDH10B_4345 - beta-lactamase/D-alanine carboxypeptidase 51.13 MEAN 4.76 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0