IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3783	 46.17	-1	4278279..4278644	+	121	170083446	rplL	ECDH10B_4174	-	50S ribosomal subunit protein L7/L12
3784	 52.62	0	4278964..4282992	+	1342	170083447	rpoB	ECDH10B_4175	-	RNA polymerase, beta subunit
3785	 53.84	0	4283069..4287292	+	1407	170083448	rpoC	ECDH10B_4176	-	RNA polymerase, beta prime subunit
3786	 42.41	-1	4287505..4288044	+	179	170083449	htrC	ECDH10B_4177	-	heat shock protein
3787	 55.03	0	4288454..4289587	-	377	170083450	thiH	ECDH10B_4178	-	thiamin biosynthesis ThiGH complex subunit
3788	 58.50	+1	4289584..4290354	-	256	170083451	thiG	ECDH10B_4179	-	thiamin biosynthesis ThiGH complex subunit
3789	 55.72	0	4290356..4290556	-	66	170083452	thiS	ECDH10B_4180	-	sulphur carrier protein
3790	 57.54	+1	4290540..4291295	-	251	170083453	thiF	ECDH10B_4181	-	thiamin (thiazole moiety) biosynthesis protein
3791	 58.02	+1	4291288..4291923	-	211	170083454	thiE	ECDH10B_4182	-	thiamin phosphate synthase (thiamin phosphate pyrophosphorylase)
3792	 55.75	0	4291923..4293818	-	631	170083455	thiC	ECDH10B_4183	-	thiamin (pyrimidine moiety) biosynthesis protein
3793	 49.06	0	4294051..4294527	-	158	170083456	rsd	ECDH10B_4184	-	stationary phase protein, binds sigma 70 RNA polymerase subunit
3794	 53.23	0	4294622..4295395	+	257	170083457	nudC	ECDH10B_4185	-	NADH pyrophosphatase
3795	 56.06	+1	4295435..4296499	+	354	170083458	hemE	ECDH10B_4186	-	uroporphyrinogen decarboxylase
3796	 58.78	+1	4296509..4297180	+	223	170083459	nfi	ECDH10B_4187	-	endonuclease V
3797	 48.56	0	4297223..4297813	+	196	170083460	yjaG	ECDH10B_4188	-	hypothetical protein
3798	 48.35	0	4298000..4298272	+	90	170083461	hupA	ECDH10B_4189	-	HU, DNA-binding transcriptional regulator, alpha subunit
3799	 53.45	0	4298285..4298980	+	231	170083462	yjaH	ECDH10B_4190	-	hypothetical protein
3800	 53.52	0	4298982..4299407	-	141	170083463	zraP	ECDH10B_4191	-	Zn-binding periplasmic protein
3801	 54.29	0	4299645..4301042	+	465	170083464	zraS	ECDH10B_4192	-	sensory histidine kinase in two-component regulatory system with ZraR
3802	 56.26	+1	4301039..4302364	+	441	170083465	zraR	ECDH10B_4193	-	fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator; sigma54 interaction protein
3803	 58.22	+1	4302361..4303650	-	429	170083466	purD	ECDH10B_4194	-	phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase
3804	 56.29	+1	4303662..4305251	-	529	170083467	purH	ECDH10B_4195	-	fused IMP cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase
3805	 45.31	-1	4310953..4311336	+	127	170083468	yjaA	ECDH10B_4200	-	hypothetical protein
3806	 54.50	0	4311399..4311842	-	147	170083469	yjaB	ECDH10B_4201	-	acetyltransferase
3807	 50.00	0	4311999..4312928	+	309	170083470	metA	ECDH10B_4202	-	homoserine transsuccinylase
3808	 51.75	0	4313197..4314798	+	533	170083471	aceB	ECDH10B_4203	-	malate synthase A
3809	 55.33	0	4314828..4316132	+	434	170083472	aceA	ECDH10B_4204	-	isocitrate lyase
3810	 52.79	0	4316315..4318051	+	578	170083473	aceK	ECDH10B_4205	-	isocitrate dehydrogenase kinase/phosphatase
3811	 37.63	-2	4318020..4320206	-	728	170083474	arpA	ECDH10B_4206	-	regulator of acetyl CoA synthetase
3812	 54.18	0	4320523..4321347	-	274	170083475	iclR	ECDH10B_4207	-	DNA-binding transcriptional repressor
3813	 55.84	0	4321547..4325230	+	1227	170083476	metH	ECDH10B_4208	-	homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent
3814	 55.33	0	4325450..4327081	+	543	170083477	yjbB	ECDH10B_4209	-	transporter
3815	 54.35	0	4327172..4327861	-	229	170083478	pepE	ECDH10B_4210	-	(alpha)-aspartyl dipeptidase
3816	 51.55	0	4328073..4328945	+	290	170083479	rluF	ECDH10B_4211	-	23S rRNA pseudouridine synthase
3817	 49.45	0	4329078..4329350	-	90	170083480	yjbD	ECDH10B_4212	-	hypothetical protein
3818	 53.85	0	4329603..4330952	-	449	170083481	lysC	ECDH10B_4213	-	aspartokinase III
3819	 51.33	0	4331477..4333126	+	549	170083482	pgi	ECDH10B_4214	-	glucosephosphate isomerase
3820	 60.49	+1	4333625..4333867	+	80	170083483	yjbE	ECDH10B_4215	-	hypothetical protein
3821	 54.77	0	4333981..4334619	+	212	170083484	yjbF	ECDH10B_4216	-	lipoprotein
3822	 58.67	+1	4334616..4335353	+	245	170083485	yjbG	ECDH10B_4217	-	hypothetical protein
3823	 54.03	0	4335353..4337449	+	698	170083486	yjbH	ECDH10B_4218	-	porin
3824	 49.15	0	4338044..4338454	+	136	170083487	yjbA	ECDH10B_4219	-	phosphate starvation inducible protein
3825	 49.59	0	4338498..4339973	-	491	170083488	xylE	ECDH10B_4220	-	D-xylose transporter
3826	 54.55	0	4340345..4341235	-	296	170083489	malG	ECDH10B_4221	-	maltose ABC transporter membrane protein
3827	 53.27	0	4341250..4342794	-	514	170083490	malF	ECDH10B_4222	-	maltose ABC transporter membrane protein
3828	 51.05	0	4342948..4344138	-	396	170083491	malE	ECDH10B_4223	-	maltose ABC transporter periplasmic substrate-binding protein
3829	 54.84	0	4344503..4345618	+	371	170083492	malK	ECDH10B_4224	-	fused maltose ABC transporter ATP-binding protein/regulatory protein
3830	 51.68	0	4345690..4347030	+	446	170083493	lamB	ECDH10B_4225	-	maltose outer membrane porin (maltoporin)
3831	 53.42	0	4347273..4348193	+	306	170083494	malM	ECDH10B_4226	-	maltose regulon periplasmic protein
3832	 33.18	-2	4348674..4350002	+	442	170083495	yjbI	ECDH10B_4227	-	hypothetical protein
3833	 52.81	0	4350225..4350722	+	165	170083496	ubiC	ECDH10B_4228	-	chorismate pyruvate lyase
3834	 51.78	0	4350735..4351607	+	290	170083497	ubiA	ECDH10B_4229	-	p-hydroxybenzoate octaprenyltransferase
3835	 55.16	0	4351762..4354185	-	807	170083498	plsB	ECDH10B_4230	-	glycerol-3-phosphate O-acyltransferase
3836	 51.76	0	4354356..4354724	+	122	170083499	dgkA	ECDH10B_4231	-	diacylglycerol kinase
3837	 51.89	0	4354834..4355442	+	202	170083500	lexA	ECDH10B_4232	-	DNA-binding transcriptional repressor of SOS regulon
3838	 55.72	0	4355461..4356840	+	459	170083501	dinF	ECDH10B_4233	-	DNA-damage-inducible SOS response protein
3839	 42.38	-1	4356956..4357165	+	69	170083502	yjbJ	ECDH10B_4234	-	stress response protein
3840	 52.13	0	4357207..4357722	-	171	170083503	zur	ECDH10B_4235	-	DNA-binding transcriptional repressor, Zn(II)-binding
3841	 28.63	-2	4358040..4358294	+	84	170083504	yjbL	ECDH10B_4236	-	hypothetical protein
3842	 36.58	-2	4358318..4359025	+	235	170083505	yjbM	ECDH10B_4237	-	hypothetical protein
3843	 53.66	0	4359388..4360425	+	345	170083506	dusA	ECDH10B_4238	-	tRNA-dihydrouridine synthase A
3844	 49.79	0	4360559..4360801	+	80	170083507	yjbO	ECDH10B_4239	-	phage shock protein G
3845	 53.05	0	4360967..4361950	-	327	170083508	qor	ECDH10B_4240	-	quinone oxidoreductase, NADPH-dependent
3846	 53.81	0	4362033..4363448	+	471	170083509	dnaB	ECDH10B_4241	-	replicative DNA helicase
3847	 55.93	+1	4363501..4364580	+	359	170083510	alr	ECDH10B_4242	-	alanine racemase 1, PLP-binding, biosynthetic
3848	 52.76	0	4364833..4366026	+	397	170083511	tyrB	ECDH10B_4243	-	tyrosine aminotransferase, tyrosine-repressible, PLP-dependent
3849	 49.44	0	4367133..4367846	+	237	170083512	aphA	ECDH10B_4244	-	acid phosphatase/phosphotransferase, class B, non-specific
3850	 51.80	0	4367957..4368373	+	138	170083513	yjbQ	ECDH10B_4245	-	hypothetical protein
3851	 50.42	0	4368377..4368733	+	118	170083514	yjbR	ECDH10B_4246	-	hypothetical protein
3852	 58.10	+1	4371844..4372380	+	178	170083515	ssb	ECDH10B_4248	-	single-stranded DNA-binding protein
3853	 52.48	0	4372479..4372760	-	93	170083516	yjcB	ECDH10B_4249	-	inner membrane protein
3854	 50.93	0	4374779..4375102	-	107	170083517	soxS	ECDH10B_4251	-	DNA-binding transcriptional dual regulator
3855	 52.04	0	4375188..4375652	+	154	170083518	soxR	ECDH10B_4252	-	DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing
3856	 55.93	+1	4376198..4377547	+	449	170083519	yjcD	ECDH10B_4254	-	permease
3857	 55.82	0	4377699..4379348	+	549	170083520	yjcE	ECDH10B_4255	-	cation/proton antiporter
3858	 32.95	-2	4379502..4380794	-	430	170083521	yjcF	ECDH10B_4256	-	hypothetical protein
3859	 55.76	0	4380972..4382621	-	549	170083522	actP	ECDH10B_4257	-	acetate transporter
3860	 49.21	0	4382618..4382932	-	104	170083523	yjcH	ECDH10B_4258	-	inner membrane protein involved in acetate transport
3861	 56.87	+1	4383132..4385090	-	652	170083524	acs	ECDH10B_4259	-	acetyl-CoA synthetase
3862	 52.26	0	4385483..4386919	+	478	170083525	nrfA	ECDH10B_4260	-	nitrite reductase, formate-dependent, cytochrome
3863	 57.89	+1	4388304..4388975	+	223	170083526	nrfC	ECDH10B_4263	-	formate-dependent nitrite reductase, 4Fe4S subunit
3864	 57.58	+1	4388972..4389928	+	318	170083527	nrfD	ECDH10B_4264	-	formate-dependent nitrite reductase, membrane subunit
3865	 57.32	+1	4390008..4391666	+	552	170083528	nrfE	ECDH10B_4265	-	heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE
3866	 52.34	0	4391659..4392042	+	127	170083529	nrfF	ECDH10B_4266	-	heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF
3867	 51.76	0	4392039..4392635	+	198	170083530	nrfG	ECDH10B_4267	-	heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG
3868	 53.27	0	4392977..4394290	+	437	170083531	gltP	ECDH10B_4268	-	glutamate/aspartate:proton symporter
3869	 49.71	0	4394821..4395510	-	229	170083532	yjcO	ECDH10B_4269	-	hypothetical protein
3870	 54.38	0	4395604..4397751	-	715	170083533	fdhF	ECDH10B_4270	-	formate dehydrogenase-H, selenopolypeptide subunit
3871	 55.76	0	4397949..4399415	-	488	170083534	yjcP	ECDH10B_4271	-	outer membrane factor of efflux pump
3872	 54.53	0	4399412..4401463	-	683	170083535	yjcQ	ECDH10B_4272	-	multidrug efflux system component
3873	 55.91	+1	4401463..4402494	-	343	170083536	yjcR	ECDH10B_4273	-	membrane fusion protein of efflux pump
3874	 52.92	0	4402997..4404982	-	661	170083537	yjcS	ECDH10B_4274	-	alkyl sulfatase
3875	 54.95	0	4405255..4406184	-	309