version 1.0
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137 4126 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3766 56.48 +1 4254570..4255943 + 457 170083429 argH ECDH10B_4148 - argininosuccinate lyase 3767 55.45 0 4256210..4257127 + 305 170083430 oxyR ECDH10B_4150 - DNA-binding transcriptional dual regulator 3768 51.82 0 4257110..4258510 - 466 170083431 sthA ECDH10B_4151 - soluble pyridine nucleotide transhydrogenase 3769 53.40 0 4258844..4259491 + 215 170083432 fabR ECDH10B_4152 - DNA-binding transcriptional repressor 3770 49.17 0 4259491..4259850 + 119 170083433 yijD ECDH10B_4153 - inner membrane protein 3771 50.86 0 4259890..4260990 - 366 170083434 trmA ECDH10B_4154 - tRNA (uracil-5-)-methyltransferase 3772 50.24 0 4261359..4263203 + 614 170083435 btuB ECDH10B_4155 - vitamin B12/cobalamin outer membrane transporter 3773 51.52 0 4263148..4264005 + 285 170083436 murI ECDH10B_4156 - glutamate racemase 3774 45.97 -1 4269777..4270805 + 342 170083437 murB ECDH10B_4161 - UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding 3775 49.38 0 4270802..4271767 + 321 170083438 birA ECDH10B_4162 - bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase and DNA-binding transcriptional repressor, bio-5'-AMP-binding 3776 44.06 -1 4271796..4272746 - 316 170083439 coaA ECDH10B_4163 - pantothenate kinase 3777 53.42 0 4273663..4274847 + 394 170083440 tufB ECDH10B_4168 - protein chain elongation factor EF-Tu (duplicate of tufA) 3778 54.95 0 4275077..4275460 + 127 170083441 secE ECDH10B_4169 - preprotein translocase membrane subunit 3779 51.65 0 4275462..4276007 + 181 170083442 nusG ECDH10B_4170 - transcription termination factor 3780 52.21 0 4276166..4276594 + 142 170083443 rplK ECDH10B_4171 - 50S ribosomal subunit protein L11 3781 51.63 0 4276598..4277302 + 234 170083444 rplA ECDH10B_4172 - 50S ribosomal subunit protein L1 3782 52.41 0 4277715..4278212 + 165 170083445 rplJ ECDH10B_4173 - 50S ribosomal subunit protein L10 3783 46.17 -1 4278279..4278644 + 121 170083446 rplL ECDH10B_4174 - 50S ribosomal subunit protein L7/L12 3784 52.62 0 4278964..4282992 + 1342 170083447 rpoB ECDH10B_4175 - RNA polymerase, beta subunit 3785 53.84 0 4283069..4287292 + 1407 170083448 rpoC ECDH10B_4176 - RNA polymerase, beta prime subunit 3786 42.41 -1 4287505..4288044 + 179 170083449 htrC ECDH10B_4177 - heat shock protein 3787 55.03 0 4288454..4289587 - 377 170083450 thiH ECDH10B_4178 - thiamin biosynthesis ThiGH complex subunit 3788 58.50 +1 4289584..4290354 - 256 170083451 thiG ECDH10B_4179 - thiamin biosynthesis ThiGH complex subunit 3789 55.72 0 4290356..4290556 - 66 170083452 thiS ECDH10B_4180 - sulphur carrier protein 3790 57.54 +1 4290540..4291295 - 251 170083453 thiF ECDH10B_4181 - thiamin (thiazole moiety) biosynthesis protein 3791 58.02 +1 4291288..4291923 - 211 170083454 thiE ECDH10B_4182 - thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) 3792 55.75 0 4291923..4293818 - 631 170083455 thiC ECDH10B_4183 - thiamin (pyrimidine moiety) biosynthesis protein 3793 49.06 0 4294051..4294527 - 158 170083456 rsd ECDH10B_4184 - stationary phase protein, binds sigma 70 RNA polymerase subunit 3794 53.23 0 4294622..4295395 + 257 170083457 nudC ECDH10B_4185 - NADH pyrophosphatase 3795 56.06 +1 4295435..4296499 + 354 170083458 hemE ECDH10B_4186 - uroporphyrinogen decarboxylase 3796 58.78 +1 4296509..4297180 + 223 170083459 nfi ECDH10B_4187 - endonuclease V 3797 48.56 0 4297223..4297813 + 196 170083460 yjaG ECDH10B_4188 - hypothetical protein 3798 48.35 0 4298000..4298272 + 90 170083461 hupA ECDH10B_4189 - HU, DNA-binding transcriptional regulator, alpha subunit 3799 53.45 0 4298285..4298980 + 231 170083462 yjaH ECDH10B_4190 - hypothetical protein 3800 53.52 0 4298982..4299407 - 141 170083463 zraP ECDH10B_4191 - Zn-binding periplasmic protein 3801 54.29 0 4299645..4301042 + 465 170083464 zraS ECDH10B_4192 - sensory histidine kinase in two-component regulatory system with ZraR 3802 56.26 +1 4301039..4302364 + 441 170083465 zraR ECDH10B_4193 - fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator; sigma54 interaction protein 3803 58.22 +1 4302361..4303650 - 429 170083466 purD ECDH10B_4194 - phosphoribosylglycinamide synthetase phosphoribosylamine-glycine ligase 3804 56.29 +1 4303662..4305251 - 529 170083467 purH ECDH10B_4195 - fused IMP cyclohydrolase; phosphoribosylaminoimidazolecarboxamide formyltransferase 3805 45.31 -1 4310953..4311336 + 127 170083468 yjaA ECDH10B_4200 - hypothetical protein 3806 54.50 0 4311399..4311842 - 147 170083469 yjaB ECDH10B_4201 - acetyltransferase 3807 50.00 0 4311999..4312928 + 309 170083470 metA ECDH10B_4202 - homoserine transsuccinylase 3808 51.75 0 4313197..4314798 + 533 170083471 aceB ECDH10B_4203 - malate synthase A 3809 55.33 0 4314828..4316132 + 434 170083472 aceA ECDH10B_4204 - isocitrate lyase 3810 52.79 0 4316315..4318051 + 578 170083473 aceK ECDH10B_4205 - isocitrate dehydrogenase kinase/phosphatase 3811 37.63 -2 4318020..4320206 - 728 170083474 arpA ECDH10B_4206 - regulator of acetyl CoA synthetase 3812 54.18 0 4320523..4321347 - 274 170083475 iclR ECDH10B_4207 - DNA-binding transcriptional repressor 3813 55.84 0 4321547..4325230 + 1227 170083476 metH ECDH10B_4208 - homocysteine-N5-methyltetrahydrofolate transmethylase, B12-dependent 3814 55.33 0 4325450..4327081 + 543 170083477 yjbB ECDH10B_4209 - transporter 3815 54.35 0 4327172..4327861 - 229 170083478 pepE ECDH10B_4210 - (alpha)-aspartyl dipeptidase 3816 51.55 0 4328073..4328945 + 290 170083479 rluF ECDH10B_4211 - 23S rRNA pseudouridine synthase 3817 49.45 0 4329078..4329350 - 90 170083480 yjbD ECDH10B_4212 - hypothetical protein 3818 53.85 0 4329603..4330952 - 449 170083481 lysC ECDH10B_4213 - aspartokinase III 3819 51.33 0 4331477..4333126 + 549 170083482 pgi ECDH10B_4214 - glucosephosphate isomerase 3820 60.49 +1 4333625..4333867 + 80 170083483 yjbE ECDH10B_4215 - hypothetical protein 3821 54.77 0 4333981..4334619 + 212 170083484 yjbF ECDH10B_4216 - lipoprotein 3822 58.67 +1 4334616..4335353 + 245 170083485 yjbG ECDH10B_4217 - hypothetical protein 3823 54.03 0 4335353..4337449 + 698 170083486 yjbH ECDH10B_4218 - porin 3824 49.15 0 4338044..4338454 + 136 170083487 yjbA ECDH10B_4219 - phosphate starvation inducible protein 3825 49.59 0 4338498..4339973 - 491 170083488 xylE ECDH10B_4220 - D-xylose transporter 3826 54.55 0 4340345..4341235 - 296 170083489 malG ECDH10B_4221 - maltose ABC transporter membrane protein 3827 53.27 0 4341250..4342794 - 514 170083490 malF ECDH10B_4222 - maltose ABC transporter membrane protein 3828 51.05 0 4342948..4344138 - 396 170083491 malE ECDH10B_4223 - maltose ABC transporter periplasmic substrate-binding protein 3829 54.84 0 4344503..4345618 + 371 170083492 malK ECDH10B_4224 - fused maltose ABC transporter ATP-binding protein/regulatory protein 3830 51.68 0 4345690..4347030 + 446 170083493 lamB ECDH10B_4225 - maltose outer membrane porin (maltoporin) 3831 53.42 0 4347273..4348193 + 306 170083494 malM ECDH10B_4226 - maltose regulon periplasmic protein 3832 33.18 -2 4348674..4350002 + 442 170083495 yjbI ECDH10B_4227 - hypothetical protein 3833 52.81 0 4350225..4350722 + 165 170083496 ubiC ECDH10B_4228 - chorismate pyruvate lyase 3834 51.78 0 4350735..4351607 + 290 170083497 ubiA ECDH10B_4229 - p-hydroxybenzoate octaprenyltransferase 3835 55.16 0 4351762..4354185 - 807 170083498 plsB ECDH10B_4230 - glycerol-3-phosphate O-acyltransferase 3836 51.76 0 4354356..4354724 + 122 170083499 dgkA ECDH10B_4231 - diacylglycerol kinase 3837 51.89 0 4354834..4355442 + 202 170083500 lexA ECDH10B_4232 - DNA-binding transcriptional repressor of SOS regulon 3838 55.72 0 4355461..4356840 + 459 170083501 dinF ECDH10B_4233 - DNA-damage-inducible SOS response protein 3839 42.38 -1 4356956..4357165 + 69 170083502 yjbJ ECDH10B_4234 - stress response protein 3840 52.13 0 4357207..4357722 - 171 170083503 zur ECDH10B_4235 - DNA-binding transcriptional repressor, Zn(II)-binding 3841 28.63 -2 4358040..4358294 + 84 170083504 yjbL ECDH10B_4236 - hypothetical protein 3842 36.58 -2 4358318..4359025 + 235 170083505 yjbM ECDH10B_4237 - hypothetical protein 3843 53.66 0 4359388..4360425 + 345 170083506 dusA ECDH10B_4238 - tRNA-dihydrouridine synthase A 3844 49.79 0 4360559..4360801 + 80 170083507 yjbO ECDH10B_4239 - phage shock protein G 3845 53.05 0 4360967..4361950 - 327 170083508 qor ECDH10B_4240 - quinone oxidoreductase, NADPH-dependent 3846 53.81 0 4362033..4363448 + 471 170083509 dnaB ECDH10B_4241 - replicative DNA helicase 3847 55.93 +1 4363501..4364580 + 359 170083510 alr ECDH10B_4242 - alanine racemase 1, PLP-binding, biosynthetic 3848 52.76 0 4364833..4366026 + 397 170083511 tyrB ECDH10B_4243 - tyrosine aminotransferase, tyrosine-repressible, PLP-dependent 3849 49.44 0 4367133..4367846 + 237 170083512 aphA ECDH10B_4244 - acid phosphatase/phosphotransferase, class B, non-specific 3850 51.80 0 4367957..4368373 + 138 170083513 yjbQ ECDH10B_4245 - hypothetical protein 3851 50.42 0 4368377..4368733 + 118 170083514 yjbR ECDH10B_4246 - hypothetical protein 3852 58.10 +1 4371844..4372380 + 178 170083515 ssb ECDH10B_4248 - single-stranded DNA-binding protein 3853 52.48 0 4372479..4372760 - 93 170083516 yjcB ECDH10B_4249 - inner membrane protein 3854 50.93 0 4374779..4375102 - 107 170083517 soxS ECDH10B_4251 - DNA-binding transcriptional dual regulator 3855 52.04 0 4375188..4375652 + 154 170083518 soxR ECDH10B_4252 - DNA-binding transcriptional dual regulator, Fe-S center for redox-sensing 3856 55.93 +1 4376198..4377547 + 449 170083519 yjcD ECDH10B_4254 - permease 3857 55.82 0 4377699..4379348 + 549 170083520 yjcE ECDH10B_4255 - cation/proton antiporter 3858 32.95 -2 4379502..4380794 - 430 170083521 yjcF ECDH10B_4256 - hypothetical protein 3859 55.76 0 4380972..4382621 - 549 170083522 actP ECDH10B_4257 - acetate transporter 3860 49.21 0 4382618..4382932 - 104 170083523 yjcH ECDH10B_4258 - inner membrane protein involved in acetate transport 3861 56.87 +1 4383132..4385090 - 652 170083524 acs ECDH10B_4259 - acetyl-CoA synthetase 3862 52.26 0 4385483..4386919 + 478 170083525 nrfA ECDH10B_4260 - nitrite reductase, formate-dependent, cytochrome 3863 57.89 +1 4388304..4388975 + 223 170083526 nrfC ECDH10B_4263 - formate-dependent nitrite reductase, 4Fe4S subunit 3864 57.58 +1 4388972..4389928 + 318 170083527 nrfD ECDH10B_4264 - formate-dependent nitrite reductase, membrane subunit 3865 57.32 +1 4390008..4391666 + 552 170083528 nrfE ECDH10B_4265 - heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfE 51.13 MEAN 4.76 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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