IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.13   STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
329	 51.33	0	364692..365819	+	375	170079992	tgt	ECDH10B_0362	-	tRNA-guanine transglycosylase
330	 49.55	0	365842..366174	+	110	170079993	yajC	ECDH10B_0363	-	SecYEG protein translocase auxillary subunit
331	 53.19	0	366202..368049	+	615	170079994	secD	ECDH10B_0364	-	SecYEG protein translocase auxillary subunit
332	 51.65	0	368060..369031	+	323	170079995	secF	ECDH10B_0365	-	SecYEG protein translocase auxillary subunit
333	 47.13	0	369160..369507	+	115	170079996	yajD	ECDH10B_0366	-	hypothetical protein
334	 50.51	0	369684..370568	-	294	170079997	tsx	ECDH10B_0367	-	nucleoside channel, receptor of phage T6 and colicin K
335	 47.59	0	370867..371406	-	179	170079998	yajI	ECDH10B_0368	-	lipoprotein
336	 51.33	0	371557..372006	+	149	170079999	nrdR	ECDH10B_0369	-	DNA-binding transcriptional regulator
337	 55.34	0	372010..373113	+	367	170080000	ribD	ECDH10B_0370	-	fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase
338	 52.23	0	373202..373672	+	156	170080001	ribE	ECDH10B_0371	-	riboflavin synthase beta chain
339	 53.81	0	373692..374111	+	139	170080002	nusB	ECDH10B_0372	-	transcription antitermination protein
340	 54.40	0	374189..375166	+	325	170080003	thiL	ECDH10B_0373	-	thiamin-monophosphate kinase
341	 53.18	0	375144..375662	+	172	170080004	pgpA	ECDH10B_0374	-	phosphatidylglycerophosphatase A
342	 53.03	0	375716..376690	-	324	170080005	yajO	ECDH10B_0375	-	oxidoreductase, NAD(P)-binding
343	 54.27	0	376870..378732	-	620	170080006	dxs	ECDH10B_0376	-	1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring
344	 54.22	0	378757..379656	-	299	170080007	ispA	ECDH10B_0377	-	geranyltranstransferase
345	 55.14	0	379656..379898	-	80	170080008	xseB	ECDH10B_0378	-	exonuclease VII small subunit
346	 52.17	0	380104..381552	+	482	170080009	thiI	ECDH10B_0379	-	sulfurtransferase required for thiamine and 4-thiouridine biosynthesis
347	 56.51	+1	381606..382196	-	196	170080010	yajL	ECDH10B_0380	-	hypothetical protein
348	 51.86	0	382159..383070	-	303	170080011	panE	ECDH10B_0381	-	2-dehydropantoate reductase, NADPH-specific
349	 50.00	0	383238..383729	+	163	170080012	yajQ	ECDH10B_0382	-	nucleotide binding protein
350	 52.60	0	383857..385221	-	454	170080013	yajR	ECDH10B_0383	-	transporter
351	 53.76	0	385370..386260	-	296	170080014	cyoE	ECDH10B_0384	-	protoheme IX farnesyltransferase
352	 49.70	0	386272..386601	-	109	170080015	cyoD	ECDH10B_0385	-	cytochrome o ubiquinol oxidase subunit IV
353	 53.50	0	386601..387215	-	204	170080016	cyoC	ECDH10B_0386	-	cytochrome o ubiquinol oxidase subunit III
354	 52.96	0	387205..389196	-	663	170080017	cyoB	ECDH10B_0387	-	cytochrome o ubiquinol oxidase subunit I
355	 50.95	0	389218..390165	-	315	170080018	cyoA	ECDH10B_0388	-	cytochrome o ubiquinol oxidase subunit II
356	 53.66	0	390625..392100	-	491	170080019	ampG	ECDH10B_0389	-	muropeptide transporter
357	 51.30	0	392144..392722	-	192	170080020	yajG	ECDH10B_0390	-	lipoprotein
358	 48.43	0	393027..393344	+	105	170080021	bolA	ECDH10B_0391	-	regulator of penicillin binding proteins and beta lactamase transcription (morphogene)
359	 51.19	0	393688..394986	+	432	170080022	tig	ECDH10B_0392	-	peptidyl-prolyl cis/trans isomerase (trigger factor)
360	 51.12	0	395232..395855	+	207	170080023	clpP	ECDH10B_0393	-	proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases
361	 51.53	0	395981..397255	+	424	170080024	clpX	ECDH10B_0394	-	ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease
362	 52.31	0	397443..399797	+	784	170080025	lon	ECDH10B_0395	-	DNA-binding ATP-dependent protease La
363	 49.08	0	400006..400278	+	90	170080026	hupB	ECDH10B_0396	-	HU, DNA-binding transcriptional regulator, beta subunit
364	 52.35	0	400470..402341	+	623	170080027	ppiD	ECDH10B_0397	-	peptidyl-prolyl cis-trans isomerase (rotamase D)
365	 54.84	0	402492..402863	+	123	170080028	ybaV	ECDH10B_0398	-	hypothetical protein
366	 46.12	-1	402957..403355	+	132	170080029	ybaW	ECDH10B_0399	-	hypothetical protein
367	 51.72	0	403407..404102	-	231	170080030	queC	ECDH10B_0400	-	enzyme in preQ0 biosynthesis
368	 52.97	0	404167..405867	-	566	170080031	ybaE	ECDH10B_0401	-	ABC transporter periplasmic-binding protein
369	 51.40	0	405967..406785	+	272	170080032	cof	ECDH10B_0402	-	thiamin pyrimidine pyrophosphate hydrolase
370	 51.85	0	406938..407396	+	152	170080033	ybaO	ECDH10B_0403	-	DNA-binding transcriptional regulator
371	 54.03	0	407426..409198	+	590	170080034	mdlA	ECDH10B_0404	-	multidrug ABC transporter ATP-binding protein
372	 56.29	+1	409191..410972	+	593	170080035	mdlB	ECDH10B_0405	-	multidrug ABC transporter ATP-binding protein
373	 50.74	0	411153..411491	+	112	170080036	glnK	ECDH10B_0406	-	nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB
374	 56.18	+1	411521..412807	+	428	170080037	amtB	ECDH10B_0407	-	ammonium transporter
375	 52.50	0	412856..413716	-	286	170080038	tesB	ECDH10B_0408	-	acyl-CoA thioesterase II
376	 53.93	0	413934..414506	+	190	170080039	ybaY	ECDH10B_0409	-	outer membrane lipoprotein
377	 54.10	0	414537..414926	-	129	170080040	ybaZ	ECDH10B_0410	-	methyltransferase
378	 49.44	0	415227..415580	+	117	170080041	ybaA	ECDH10B_0412	-	hypothetical protein
379	 48.03	0	415622..417172	-	516	170080042	ylaB	ECDH10B_0413	-	inner membrane protein
380	 47.13	0	417336..417806	-	156	170080043	ylaC	ECDH10B_0414	-	inner membrane protein
381	 48.37	0	417922..418473	-	183	170080044	maa	ECDH10B_0415	-	maltose O-acetyltransferase
382	 39.73	-2	418645..418863	-	72	170080045	hha	ECDH10B_0416	-	haemolysin expression modulating protein
383	 40.53	-2	418889..419263	-	124	170080046	ybaJ	ECDH10B_0417	-	hypothetical protein
384	 53.97	0	419809..422958	-	1049	170080047	acrB	ECDH10B_0418	-	multidrug efflux system protein
385	 53.85	0	422981..424174	-	397	170080048	acrA	ECDH10B_0419	-	multidrug efflux system
386	 45.37	-1	424316..424963	+	215	170080049	acrR	ECDH10B_0420	-	DNA-binding transcriptional repressor
387	 51.89	0	425091..428453	+	1120	170080050	kefA	ECDH10B_0421	-	fused protein; mechanosensitive channel protein
388	 48.15	0	428665..428826	-	53	170080051	ybaM	ECDH10B_0422	-	hypothetical protein
389	 58.90	+1	428840..429367	-	175	170080052	priC	ECDH10B_0423	-	primosomal replication protein N''
390	 52.12	0	429437..429814	+	125	170080053	ybaN	ECDH10B_0424	-	inner membrane protein
391	 54.35	0	429967..430518	+	183	170080054	apt	ECDH10B_0425	-	adenine phosphoribosyltransferase
392	 57.66	+1	430647..432578	+	643	170080055	dnaX	ECDH10B_0426	-	DNA polymerase III/DNA elongation factor III, tau and gamma subunits
393	 52.73	0	432631..432960	+	109	170080056	ybaB	ECDH10B_0427	-	hypothetical protein
394	 57.76	+1	432960..433565	+	201	170080057	recR	ECDH10B_0428	-	gap repair protein
395	 52.85	0	433675..435549	+	624	170080058	htpG	ECDH10B_0429	-	HSP90 family molecular chaperone
396	 51.78	0	435730..436374	+	214	170080059	adk	ECDH10B_0430	-	adenylate kinase
397	 53.89	0	436610..437572	+	320	170080060	hemH	ECDH10B_0431	-	ferrochelatase
398	 52.08	0	437569..438528	-	319	170080061	aes	ECDH10B_0432	-	acetyl esterase
399	 51.88	0	438680..439984	+	434	170080062	gsk	ECDH10B_0433	-	inosine/guanosine kinase
400	 55.46	0	440117..441793	-	558	170080063	ybaL	ECDH10B_0434	-	transporter
401	 52.42	0	442031..443251	-	406	170080064	fsr	ECDH10B_0435	-	fosmidomycin efflux system
402	 50.88	0	443469..445121	+	550	170080065	ushA	ECDH10B_0436	-	bifunctional UDP-sugar hydrolase and 5'-nucleotidase
403	 50.83	0	445158..445637	-	159	170080066	ybaK	ECDH10B_0437	-	bifunctional cys-tRNA Pro deacetylase and cys-tRNA Cys deacylase
404	 54.09	0	445841..446635	-	264	170080067	ybaP	ECDH10B_0439	-	hypothetical protein
405	 44.74	-1	446773..447114	+	113	170080068	ybaQ	ECDH10B_0440	-	DNA-binding transcriptional regulator
406	 58.28	+1	447430..449934	-	834	170080069	copA	ECDH10B_0441	-	copper transporter
407	 53.16	0	450196..451128	+	310	170080070	ybaS	ECDH10B_0442	-	glutaminase
408	 53.29	0	451131..452423	+	430	170080071	ybaT	ECDH10B_0443	-	transporter
409	 58.58	+1	452548..452955	+	135	170080072	cueR	ECDH10B_0444	-	DNA-binding transcriptional activator of copper-responsive regulon genes
410	 57.46	+1	452956..453411	-	151	170080073	ybbJ	ECDH10B_0445	-	inner membrane protein
411	 52.83	0	453411..454328	-	305	170080074	qmcA	ECDH10B_0446	-	protease, membrane anchored
412	 45.43	-1	454474..455151	+	225	170080075	ybbL	ECDH10B_0447	-	ABC transporter ATP-binding protein
413	 46.15	-1	455138..455917	+	259	170080076	ybbM	ECDH10B_0448	-	inner membrane protein
414	 55.91	+1	455980..456834	-	284	170080077	ybbN	ECDH10B_0449	-	thioredoxin domain-containing protein
415	 54.32	0	456895..457704	-	269	170080078	ybbO	ECDH10B_0450	-	oxidoreductase
416	 52.79	0	457694..458320	-	208	170080079	tesA	ECDH10B_0451	-	multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1
417	 56.62	+1	458288..458974	+	228	170080080	ybbA	ECDH10B_0452	-	ABC transporter ATP-binding protein
418	 57.60	+1	458971..461385	+	804	170080081	ybbP	ECDH10B_0453	-	inner membrane protein
419	 60.13	+1	461816..466096	+	1426	170080082	rhsD	ECDH10B_0454	-	rhsD element protein
420	 30.62	-2	466136..466504	+	122	170080083	ybbC	ECDH10B_0455	-	hypothetical protein
421	 44.59	-1	466504..467214	+	236	170080084	ylbH	ECDH10B_0456	-	protein, rhs-like protein
422	 50.27	0	468200..468571	-	123	170080085	ylbG	ECDH10B_0458	-	DNA-binding transcriptional regulator
423	 55.62	0	468687..469781	-	364