IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3708	 55.92	+1	4188635..4190086	-	483	170083371	frvB	ECDH10B_4089	-	fused PTS enzymes: IIB component; IIC component
3709	 50.79	0	4190844..4191158	-	104	170083372	yiiL	ECDH10B_4091	-	L-rhamnose mutarotase
3710	 55.76	0	4191168..4191992	-	274	170083373	rhaD	ECDH10B_4092	-	rhamnulose-1-phosphate aldolase
3711	 56.11	+1	4192443..4193702	-	419	170083374	rhaA	ECDH10B_4093	-	L-rhamnose isomerase
3712	 54.76	0	4193699..4195168	-	489	170083375	rhaB	ECDH10B_4094	-	rhamnulokinase
3713	 51.85	0	4195456..4196292	+	278	170083376	rhaS	ECDH10B_4095	-	DNA-binding transcriptional activator, L-rhamnose-binding
3714	 49.73	0	4196276..4197214	+	312	170083377	rhaR	ECDH10B_4096	-	DNA-binding transcriptional activator, L-rhamnose-binding
3715	 51.69	0	4197211..4198245	-	344	170083378	rhaT	ECDH10B_4097	-	L-rhamnose:proton symporter
3716	 53.30	0	4198530..4199150	+	206	170083379	sodA	ECDH10B_4098	-	superoxide dismutase, Mn
3717	 52.74	0	4199410..4200393	+	327	170083380	kdgT	ECDH10B_4099	-	2-keto-3-deoxy-D-gluconate transporter
3718	 53.04	0	4200542..4201216	+	224	170083381	yiiM	ECDH10B_4100	-	hypothetical protein
3719	 54.59	0	4201322..4202695	-	457	170083382	cpxA	ECDH10B_4101	-	sensory histidine kinase in two-component regulatory system with CpxR
3720	 51.36	0	4202692..4203390	-	232	170083383	cpxR	ECDH10B_4102	-	DNA-binding response regulator in two-component regulatory system with CpxA
3721	 50.10	0	4203540..4204040	+	166	170083384	cpxP	ECDH10B_4103	-	periplasmic protein combats stress
3722	 52.16	0	4204189..4205091	+	300	170083385	fieF	ECDH10B_4104	-	zinc transporter
3723	 53.48	0	4205272..4206234	+	320	170083386	pfkA	ECDH10B_4105	-	6-phosphofructokinase I
3724	 50.61	0	4206554..4207543	+	329	170083387	sbp	ECDH10B_4106	-	sulfate ABC transporter periplasmic substrate-binding protein
3725	 48.68	0	4207650..4208405	+	251	170083388	cdh	ECDH10B_4107	-	CDP-diacylglycerol phosphotidylhydrolase
3726	 52.60	0	4208460..4209227	-	255	170083389	tpiA	ECDH10B_4108	-	triosephosphate isomerase
3727	 49.17	0	4209335..4209934	-	199	170083390	yiiQ	ECDH10B_4109	-	hypothetical protein
3728	 49.43	0	4210035..4210475	+	146	170083391	yiiR	ECDH10B_4110	-	inner membrane protein
3729	 46.33	-1	4210687..4210986	+	99	170083392	yiiS	ECDH10B_4111	-	hypothetical protein
3730	 43.12	-1	4211013..4211441	+	142	170083393	yiiT	ECDH10B_4112	-	stress-induced protein
3731	 53.55	0	4211446..4212192	-	248	170083394	fpr	ECDH10B_4113	-	ferredoxin-NADP reductase
3732	 56.78	+1	4212289..4213299	-	336	170083395	glpX	ECDH10B_4114	-	fructose 1,6-bisphosphatase II
3733	 54.08	0	4213434..4214942	-	502	170083396	glpK	ECDH10B_4115	-	glycerol kinase
3734	 50.95	0	4214965..4215810	-	281	170083397	glpF	ECDH10B_4116	-	glycerol facilitator
3735	 48.37	0	4216235..4216480	+	81	170083398	yiiU	ECDH10B_4117	-	hypothetical protein
3736	 52.26	0	4216565..4217050	-	161	170083399	rraA	ECDH10B_4118	-	ribonuclease E (RNase E) inhibitor protein
3737	 53.40	0	4217143..4218069	-	308	170083400	menA	ECDH10B_4119	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3738	 52.63	0	4218136..4219467	-	443	170083401	hslU	ECDH10B_4120	-	molecular chaperone and ATPase component of HslUV protease
3739	 52.73	0	4219477..4220007	-	176	170083402	hslV	ECDH10B_4121	-	peptidase component of the HslUV protease
3740	 57.40	+1	4220100..4221059	-	319	170083403	ftsN	ECDH10B_4122	-	essential cell division protein
3741	 52.05	0	4221151..4222176	-	341	170083404	cytR	ECDH10B_4123	-	DNA-binding transcriptional dual regulator
3742	 57.48	+1	4222332..4224530	-	732	170083405	priA	ECDH10B_4124	-	primosome factor n' (replication factor Y)
3743	 49.30	0	4224733..4224945	+	70	170083406	rpmE	ECDH10B_4125	-	50S ribosomal subunit protein L31
3744	 52.38	0	4225006..4225614	-	202	170083407	yiiX	ECDH10B_4126	-	peptidoglycan peptidase
3745	 51.89	0	4225798..4226115	-	105	170083408	metJ	ECDH10B_4127	-	DNA-binding transcriptional repressor, S-adenosylmethionine-binding
3746	 54.95	0	4226392..4227552	+	386	170083409	metB	ECDH10B_4128	-	cystathionine gamma-synthase, PLP-dependent
3747	 58.32	+1	4227555..4229987	+	810	170083410	metL	ECDH10B_4129	-	fused aspartokinase II; homoserine dehydrogenase II
3748	 51.85	0	4230336..4231226	+	296	170083411	metF	ECDH10B_4130	-	5,10-methylenetetrahydrofolate reductase
3749	 55.75	0	4231555..4233735	+	726	170083412	katG	ECDH10B_4131	-	catalase/hydroperoxidase HPI(I)
3750	 54.08	0	4233828..4234733	+	301	170083413	yijE	ECDH10B_4132	-	permease
3751	 52.59	0	4234760..4235377	-	205	170083414	yijF	ECDH10B_4133	-	hypothetical protein
3752	 54.71	0	4235652..4236755	-	367	170083415	gldA	ECDH10B_4134	-	glycerol dehydrogenase, NAD
3753	 53.39	0	4236766..4237428	-	220	170083416	fsaB	ECDH10B_4135	-	fructose-6-phosphate aldolase 2
3754	 55.36	0	4237440..4239941	-	833	170083417	ptsA	ECDH10B_4136	-	fused PTS enzymes: Hpr component; enzyme I component; enzyme IIA component
3755	 54.17	0	4240250..4241329	+	359	170083418	frwC	ECDH10B_4137	-	enzyme IIC component of PTS
3756	 49.22	0	4241344..4241664	+	106	170083419	frwB	ECDH10B_4138	-	enzyme IIB component of PTS
3757	 53.13	0	4241715..4244012	+	765	170083420	pflD	ECDH10B_4139	-	formate acetyltransferase 2 (pyruvate formate lyase II)
3758	 54.95	0	4243978..4244856	+	292	170083421	pflC	ECDH10B_4140	-	pyruvate formate lyase II activase
3759	 56.14	+1	4244858..4245199	+	113	170083422	frwD	ECDH10B_4141	-	enzyme IIB component of PTS
3760	 53.05	0	4245186..4246037	-	283	170083423	yijO	ECDH10B_4142	-	DNA-binding transcriptional regulator
3761	 50.00	0	4246252..4247985	-	577	170083424	yijP	ECDH10B_4143	-	inner membrane protein
3762	 55.66	0	4248167..4250818	-	883	170083425	ppc	ECDH10B_4144	-	phosphoenolpyruvate carboxylase
3763	 51.74	0	4251416..4252567	-	383	170083426	argE	ECDH10B_4145	-	acetylornithine deacetylase
3764	 53.53	0	4252721..4253725	+	334	170083427	argC	ECDH10B_4146	-	N-acetyl-gamma-glutamylphosphate reductase, NAD(P)-binding
3765	 55.56	0	4253736..4254509	+	257	170083428	argB	ECDH10B_4147	-	acetylglutamate kinase
3766	 56.48	+1	4254570..4255943	+	457	170083429	argH	ECDH10B_4148	-	argininosuccinate lyase
3767	 55.45	0	4256210..4257127	+	305	170083430	oxyR	ECDH10B_4150	-	DNA-binding transcriptional dual regulator
3768	 51.82	0	4257110..4258510	-	466	170083431	sthA	ECDH10B_4151	-	soluble pyridine nucleotide transhydrogenase
3769	 53.40	0	4258844..4259491	+	215	170083432	fabR	ECDH10B_4152	-	DNA-binding transcriptional repressor
3770	 49.17	0	4259491..4259850	+	119	170083433	yijD	ECDH10B_4153	-	inner membrane protein
3771	 50.86	0	4259890..4260990	-	366	170083434	trmA	ECDH10B_4154	-	tRNA (uracil-5-)-methyltransferase
3772	 50.24	0	4261359..4263203	+	614	170083435	btuB	ECDH10B_4155	-	vitamin B12/cobalamin outer membrane transporter
3773	 51.52	0	4263148..4264005	+	285	170083436	murI	ECDH10B_4156	-	glutamate racemase
3774	 45.97	-1	4269777..4270805	+	342	170083437	murB	ECDH10B_4161	-	UDP-N-acetylenolpyruvoylglucosamine reductase, FAD-binding
3775	 49.38	0	4270802..4271767	+	321	170083438	birA	ECDH10B_4162	-	bifunctional biotin-[acetylCoA carboxylase] holoenzyme synthetase and DNA-binding transcriptional repressor, bio-5'-AMP-binding
3776	 44.06	-1	4271796..4272746	-	316	170083439	coaA	ECDH10B_4163	-	pantothenate kinase
3777	 53.42	0	4273663..4274847	+	394	170083440	tufB	ECDH10B_4168	-	protein chain elongation factor EF-Tu (duplicate of tufA)
3778	 54.95	0	4275077..4275460	+	127	170083441	secE	ECDH10B_4169	-	preprotein translocase membrane subunit
3779	 51.65	0	4275462..4276007	+	181	170083442	nusG	ECDH10B_4170	-	transcription termination factor
3780	 52.21	0	4276166..4276594	+	142	170083443	rplK	ECDH10B_4171	-	50S ribosomal subunit protein L11
3781	 51.63	0	4276598..4277302	+	234	170083444	rplA	ECDH10B_4172	-	50S ribosomal subunit protein L1
3782	 52.41	0	4277715..4278212	+	165	170083445	rplJ	ECDH10B_4173	-	50S ribosomal subunit protein L10
3783	 46.17	-1	4278279..4278644	+	121	170083446	rplL	ECDH10B_4174	-	50S ribosomal subunit protein L7/L12
3784	 52.62	0	4278964..4282992	+	1342	170083447	rpoB	ECDH10B_4175	-	RNA polymerase, beta subunit
3785	 53.84	0	4283069..4287292	+	1407	170083448	rpoC	ECDH10B_4176	-	RNA polymerase, beta prime subunit
3786	 42.41	-1	4287505..4288044	+	179	170083449	htrC	ECDH10B_4177	-	heat shock protein
3787	 55.03	0	4288454..4289587	-	377	170083450	thiH	ECDH10B_4178	-	thiamin biosynthesis ThiGH complex subunit
3788	 58.50	+1	4289584..4290354	-	256	170083451	thiG	ECDH10B_4179	-	thiamin biosynthesis ThiGH complex subunit
3789	 55.72	0	4290356..4290556	-	66	170083452	thiS	ECDH10B_4180	-	sulphur carrier protein
3790	 57.54	+1	4290540..4291295	-	251	170083453	thiF	ECDH10B_4181	-	thiamin (thiazole moiety) biosynthesis protein
3791	 58.02	+1	4291288..4291923	-	211	170083454	thiE	ECDH10B_4182	-	thiamin phosphate synthase (thiamin phosphate pyrophosphorylase)
3792	 55.75	0	4291923..4293818	-	631	170083455	thiC	ECDH10B_4183	-	thiamin (pyrimidine moiety) biosynthesis protein
3793	 49.06	0	4294051..4294527	-	158	170083456	rsd	ECDH10B_4184	-	stationary phase protein, binds sigma 70 RNA polymerase subunit
3794	 53.23	0	4294622..4295395	+	257	170083457	nudC	ECDH10B_4185	-	NADH pyrophosphatase
3795	 56.06	+1	4295435..4296499	+	354	170083458	hemE	ECDH10B_4186	-	uroporphyrinogen decarboxylase
3796	 58.78	+1	4296509..4297180	+	223	170083459	nfi	ECDH10B_4187	-	endonuclease V
3797	 48.56	0	4297223..4297813	+	196	170083460	yjaG	ECDH10B_4188	-	hypothetical protein
3798	 48.35	0	4298000..4298272	+	90	170083461	hupA	ECDH10B_4189	-	HU, DNA-binding transcriptional regulator, alpha subunit
3799	 53.45	0	4298285..4298980	+	231	170083462	yjaH	ECDH10B_4190	-	hypothetical protein
3800	 53.52	0	4298982..4299407	-	141