IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3656	 54.28	0	4120497..4121279	+	260	170083319	tatD	ECDH10B_4030	-	Mg-dependent DNase
3657	 49.69	0	4121276..4121764	-	162	170083320	rfaH	ECDH10B_4031	-	DNA-binding transcriptional antiterminator
3658	 53.82	0	4121931..4123424	+	497	170083321	ubiD	ECDH10B_4032	-	3-octaprenyl-4-hydroxybenzoate decarboxylase
3659	 52.85	0	4123470..4124171	+	233	170083322	fre	ECDH10B_4033	-	flavin reductase
3660	 57.73	+1	4124552..4125715	-	387	170083323	fadA	ECDH10B_4034	-	3-ketoacyl-CoA thiolase (thiolase I)
3661	 55.21	0	4125725..4127914	-	729	170083324	fadB	ECDH10B_4035	-	fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase
3662	 53.68	0	4128104..4129435	+	443	170083325	pepQ	ECDH10B_4036	-	proline dipeptidase
3663	 55.61	0	4129435..4130049	+	204	170083326	yigZ	ECDH10B_4037	-	elongation factor
3664	 53.10	0	4130088..4131539	+	483	170083327	trkH	ECDH10B_4038	-	potassium transporter
3665	 51.83	0	4131551..4132096	+	181	170083328	hemG	ECDH10B_4039	-	protoporphyrin oxidase, flavoprotein
3666	 48.73	0	4137849..4138361	-	170	170083329	mobB	ECDH10B_4045	-	molybdopterin-guanine dinucleotide biosynthesis protein B
3667	 50.09	0	4138358..4138942	-	194	170083330	mobA	ECDH10B_4046	-	molybdopterin-guanine dinucleotide synthase
3668	 46.30	-1	4139012..4139281	+	89	170083331	yihD	ECDH10B_4047	-	hypothetical protein
3669	 48.63	0	4139358..4140344	+	328	170083332	yihE	ECDH10B_4048	-	kinase
3670	 48.01	0	4140361..4140987	+	208	170083333	dsbA	ECDH10B_4049	-	periplasmic protein disulfide isomerase I
3671	 41.65	-1	4141142..4142572	+	476	170083334	yihF	ECDH10B_4050	-	hypothetical protein
3672	 45.12	-1	4142613..4143545	-	310	170083335	yihG	ECDH10B_4051	-	endonuclease
3673	 51.96	0	4143909..4146695	+	928	170083336	polA	ECDH10B_4052	-	DNA polymerase I
3674	 52.93	0	4147076..4147672	-	198	170083337	yihA	ECDH10B_4054	-	GTP-binding protein
3675	 52.35	0	4148290..4148799	+	169	170083338	yihI	ECDH10B_4056	-	hypothetical protein
3676	 53.13	0	4148988..4150361	+	457	170083339	hemN	ECDH10B_4057	-	coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent
3677	 56.95	+1	4150812..4152221	-	469	170083340	glnG	ECDH10B_4058	-	fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator; sigma54 interaction protein
3678	 55.24	0	4152233..4153282	-	349	170083341	glnL	ECDH10B_4059	-	sensory histidine kinase in two-component regulatory system with GlnG
3679	 52.91	0	4153568..4154977	-	469	170083342	glnA	ECDH10B_4060	-	glutamine synthetase
3680	 53.45	0	4155350..4157173	+	607	170083343	bipA	ECDH10B_4061	-	GTP-binding protein
3681	 49.09	0	4157390..4158100	+	236	170083344	yihL	ECDH10B_4062	-	DNA-binding transcriptional regulator
3682	 43.93	-1	4158108..4159088	+	326	170083345	yihM	ECDH10B_4063	-	sugar phosphate isomerase
3683	 45.02	-1	4159190..4160455	+	421	170083346	yihN	ECDH10B_4064	-	transporter
3684	 40.84	-2	4160546..4161238	-	230	170083347	ompL	ECDH10B_4065	-	outer membrane porin L
3685	 45.01	-1	4161306..4162709	-	467	170083348	yihO	ECDH10B_4066	-	predited transporter
3686	 52.38	0	4162752..4164158	-	468	170083349	yihP	ECDH10B_4067	-	transporter
3687	 53.51	0	4164183..4166219	-	678	170083350	yihQ	ECDH10B_4068	-	alpha-glucosidase
3688	 48.22	0	4167195..4168121	-	308	170083351	yihR	ECDH10B_4069	-	aldose-1-epimerase
3689	 53.30	0	4168235..4169476	-	413	170083352	yihS	ECDH10B_4070	-	glucosamine isomerase
3690	 53.81	0	4169493..4170371	-	292	170083353	yihT	ECDH10B_4071	-	aldolase
3691	 55.30	0	4170395..4171291	-	298	170083354	yihU	ECDH10B_4072	-	oxidoreductase
3692	 55.63	0	4171459..4172355	+	298	170083355	yihV	ECDH10B_4073	-	sugar kinase
3693	 52.42	0	4172389..4173174	+	261	170083356	yihW	ECDH10B_4074	-	DNA-binding transcriptional regulator
3694	 50.50	0	4173273..4173872	+	199	170083357	yihX	ECDH10B_4075	-	hydrolase
3695	 50.86	0	4173866..4174738	+	290	170083358	rbn	ECDH10B_4076	-	inner membrane protein
3696	 55.02	0	4174735..4175172	+	145	170083359	dtd	ECDH10B_4077	-	D-Tyr-tRNA(Tyr) deacylase
3697	 55.05	0	4175169..4176158	+	329	170083360	yiiD	ECDH10B_4078	-	acetyltransferase
3698	 47.03	0	4177011..4177229	+	72	170083361	yiiE	ECDH10B_4079	-	transcriptional regulator
3699	 46.12	-1	4177471..4177689	+	72	170083362	yiiF	ECDH10B_4080	-	hypothetical protein
3700	 54.62	0	4178019..4178948	-	309	170083363	fdhE	ECDH10B_4081	-	formate dehydrogenase formation protein
3701	 52.52	0	4178945..4179580	-	211	170083364	fdoI	ECDH10B_4082	-	formate dehydrogenase-O, cytochrome b556 subunit
3702	 55.48	0	4179577..4180479	-	300	170083365	fdoH	ECDH10B_4083	-	formate dehydrogenase-O, Fe-S subunit
3703	 55.13	0	4180492..4183542	-	1016	170083366	fdoG	ECDH10B_4084	-	formate dehydrogenase-O, large subunit
3704	 53.12	0	4183736..4184569	+	277	170083367	fdhD	ECDH10B_4085	-	formate dehydrogenase formation protein
3705	 45.64	-1	4184722..4185777	+	351	170083368	yiiG	ECDH10B_4086	-	hypothetical protein
3706	 50.03	0	4185827..4187575	-	582	170083369	frvR	ECDH10B_4087	-	regulator
3707	 52.57	0	4187575..4188645	-	356	170083370	frvX	ECDH10B_4088	-	endo-1,4-beta-glucanase
3708	 55.92	+1	4188635..4190086	-	483	170083371	frvB	ECDH10B_4089	-	fused PTS enzymes: IIB component; IIC component
3709	 50.79	0	4190844..4191158	-	104	170083372	yiiL	ECDH10B_4091	-	L-rhamnose mutarotase
3710	 55.76	0	4191168..4191992	-	274	170083373	rhaD	ECDH10B_4092	-	rhamnulose-1-phosphate aldolase
3711	 56.11	+1	4192443..4193702	-	419	170083374	rhaA	ECDH10B_4093	-	L-rhamnose isomerase
3712	 54.76	0	4193699..4195168	-	489	170083375	rhaB	ECDH10B_4094	-	rhamnulokinase
3713	 51.85	0	4195456..4196292	+	278	170083376	rhaS	ECDH10B_4095	-	DNA-binding transcriptional activator, L-rhamnose-binding
3714	 49.73	0	4196276..4197214	+	312	170083377	rhaR	ECDH10B_4096	-	DNA-binding transcriptional activator, L-rhamnose-binding
3715	 51.69	0	4197211..4198245	-	344	170083378	rhaT	ECDH10B_4097	-	L-rhamnose:proton symporter
3716	 53.30	0	4198530..4199150	+	206	170083379	sodA	ECDH10B_4098	-	superoxide dismutase, Mn
3717	 52.74	0	4199410..4200393	+	327	170083380	kdgT	ECDH10B_4099	-	2-keto-3-deoxy-D-gluconate transporter
3718	 53.04	0	4200542..4201216	+	224	170083381	yiiM	ECDH10B_4100	-	hypothetical protein
3719	 54.59	0	4201322..4202695	-	457	170083382	cpxA	ECDH10B_4101	-	sensory histidine kinase in two-component regulatory system with CpxR
3720	 51.36	0	4202692..4203390	-	232	170083383	cpxR	ECDH10B_4102	-	DNA-binding response regulator in two-component regulatory system with CpxA
3721	 50.10	0	4203540..4204040	+	166	170083384	cpxP	ECDH10B_4103	-	periplasmic protein combats stress
3722	 52.16	0	4204189..4205091	+	300	170083385	fieF	ECDH10B_4104	-	zinc transporter
3723	 53.48	0	4205272..4206234	+	320	170083386	pfkA	ECDH10B_4105	-	6-phosphofructokinase I
3724	 50.61	0	4206554..4207543	+	329	170083387	sbp	ECDH10B_4106	-	sulfate ABC transporter periplasmic substrate-binding protein
3725	 48.68	0	4207650..4208405	+	251	170083388	cdh	ECDH10B_4107	-	CDP-diacylglycerol phosphotidylhydrolase
3726	 52.60	0	4208460..4209227	-	255	170083389	tpiA	ECDH10B_4108	-	triosephosphate isomerase
3727	 49.17	0	4209335..4209934	-	199	170083390	yiiQ	ECDH10B_4109	-	hypothetical protein
3728	 49.43	0	4210035..4210475	+	146	170083391	yiiR	ECDH10B_4110	-	inner membrane protein
3729	 46.33	-1	4210687..4210986	+	99	170083392	yiiS	ECDH10B_4111	-	hypothetical protein
3730	 43.12	-1	4211013..4211441	+	142	170083393	yiiT	ECDH10B_4112	-	stress-induced protein
3731	 53.55	0	4211446..4212192	-	248	170083394	fpr	ECDH10B_4113	-	ferredoxin-NADP reductase
3732	 56.78	+1	4212289..4213299	-	336	170083395	glpX	ECDH10B_4114	-	fructose 1,6-bisphosphatase II
3733	 54.08	0	4213434..4214942	-	502	170083396	glpK	ECDH10B_4115	-	glycerol kinase
3734	 50.95	0	4214965..4215810	-	281	170083397	glpF	ECDH10B_4116	-	glycerol facilitator
3735	 48.37	0	4216235..4216480	+	81	170083398	yiiU	ECDH10B_4117	-	hypothetical protein
3736	 52.26	0	4216565..4217050	-	161	170083399	rraA	ECDH10B_4118	-	ribonuclease E (RNase E) inhibitor protein
3737	 53.40	0	4217143..4218069	-	308	170083400	menA	ECDH10B_4119	-	1,4-dihydroxy-2-naphthoate octaprenyltransferase
3738	 52.63	0	4218136..4219467	-	443	170083401	hslU	ECDH10B_4120	-	molecular chaperone and ATPase component of HslUV protease
3739	 52.73	0	4219477..4220007	-	176	170083402	hslV	ECDH10B_4121	-	peptidase component of the HslUV protease
3740	 57.40	+1	4220100..4221059	-	319	170083403	ftsN	ECDH10B_4122	-	essential cell division protein
3741	 52.05	0	4221151..4222176	-	341	170083404	cytR	ECDH10B_4123	-	DNA-binding transcriptional dual regulator
3742	 57.48	+1	4222332..4224530	-	732	170083405	priA	ECDH10B_4124	-	primosome factor n' (replication factor Y)
3743	 49.30	0	4224733..4224945	+	70	170083406	rpmE	ECDH10B_4125	-	50S ribosomal subunit protein L31
3744	 52.38	0	4225006..4225614	-	202	170083407	yiiX	ECDH10B_4126	-	peptidoglycan peptidase
3745	 51.89	0	4225798..4226115	-	105	170083408	metJ	ECDH10B_4127	-	DNA-binding transcriptional repressor, S-adenosylmethionine-binding
3746	 54.95	0	4226392..4227552	+	386	170083409	metB	ECDH10B_4128	-	cystathionine gamma-synthase, PLP-dependent
3747	 58.32	+1	4227555..4229987	+	810	170083410	metL	ECDH10B_4129	-	fused aspartokinase II; homoserine dehydrogenase II
3748	 51.85	0	4230336..4231226	+	296	170083411	metF	ECDH10B_4130	-	5,10-methylenetetrahydrofolate reductase
3749	 55.75	0	4231555..4233735	+	726