IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3605	 50.91	0	4062704..4063033	+	109	170083268	trxA	ECDH10B_3970	-	thioredoxin 1
3606	 49.02	0	4063174..4063275	+	33	170083269	rhoL	ECDH10B_3971	-	Rho operon leader peptide
3607	 50.32	0	4063360..4064619	+	419	170083270	rho	ECDH10B_3972	-	transcription termination factor
3608	 49.46	0	4064859..4065962	+	367	170083271	rfe	ECDH10B_3973	-	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase
3609	 52.72	0	4065974..4067020	+	348	170083272	wzzE	ECDH10B_3974	-	entero common antigen (ECA) polysaccharide chain length modulator
3610	 52.61	0	4067076..4068206	+	376	170083273	rffE	ECDH10B_3975	-	UDP-N-acetylglucosamine 2-epimerase
3611	 53.76	0	4068203..4069465	+	420	170083274	rffD	ECDH10B_3976	-	UDP-N-acetyl-D-mannosamine dehydrogenase
3612	 53.75	0	4069465..4070532	+	355	170083275	rffG	ECDH10B_3977	-	dTDP-D-glucose 4,6-dehydratase
3613	 55.10	0	4070551..4071432	+	293	170083276	rffH	ECDH10B_3978	-	glucose-1-phosphate thymidylyltransferase
3614	 55.56	0	4071410..4072084	+	224	170083277	rffC	ECDH10B_3979	-	dTDP-fucosamine acetyltransferase
3615	 54.38	0	4072089..4073219	+	376	170083278	rffA	ECDH10B_3980	-	dTDP-4-keto-6-deoxy-D-glucose aminotransferase
3616	 53.64	0	4073221..4074471	+	416	170083279	wzxE	ECDH10B_3981	-	lipid III translocase
3617	 52.87	0	4074468..4075547	+	359	170083280	rffT	ECDH10B_3982	-	4-alpha-L-fucosyltransferase
3618	 52.40	0	4075544..4076896	+	450	170083281	wzyE	ECDH10B_3983	-	entero common antigen (ECA) polysaccharide chain polymerase
3619	 53.17	0	4076899..4077639	+	246	170083282	rffM	ECDH10B_3984	-	UDP-N-acetyl-D-mannosaminuronic acid (ManNAcA) transferase
3620	 53.46	0	4077830..4079215	+	461	170083283	yifK	ECDH10B_3985	-	transporter
3621	 52.67	0	4079901..4081136	+	411	170083284	aslB	ECDH10B_3990	-	regulator of arylsulfatase activity
3622	 53.20	0	4081295..4082950	-	551	170083285	aslA	ECDH10B_3991	-	acrylsulfatase-like enzyme
3623	 54.97	0	4083629..4084825	-	398	170083286	hemY	ECDH10B_3993	-	protoheme IX synthesis protein
3624	 52.90	0	4086031..4086771	-	246	170083287	hemD	ECDH10B_3995	-	uroporphyrinogen III synthase
3625	 56.16	+1	4086768..4087709	-	313	170083288	hemC	ECDH10B_3996	-	hydroxymethylbilane synthase
3626	 53.89	0	4090682..4091002	-	106	170083289	cyaY	ECDH10B_3998	-	frataxin, iron-binding and oxidizing protein
3627	 49.79	0	4090793..4091278	+	161	170083290	yzcX	ECDH10B_3999	-	hypothetical protein
3628	 52.45	0	4091465..4091668	+	67	170083291	yifL	ECDH10B_4000	-	lipoprotein
3629	 55.15	0	4091705..4092529	+	274	170083292	dapF	ECDH10B_4001	-	diaminopimelate epimerase
3630	 53.96	0	4093230..4094126	+	298	170083293	xerC	ECDH10B_4003	-	site-specific tyrosine recombinase
3631	 55.79	0	4094126..4094842	+	238	170083294	yigB	ECDH10B_4004	-	hydrolase
3632	 57.70	+1	4094926..4097088	+	720	170083295	uvrD	ECDH10B_4005	-	DNA-dependent ATPase I and helicase II
3633	 47.84	0	4097235..4097999	-	254	170083296	yigE	ECDH10B_4006	-	hypothetical protein
3634	 52.68	0	4098369..4099319	+	316	170083297	corA	ECDH10B_4007	-	magnesium/nickel/cobalt transporter
3635	 34.91	-2	4099362..4099742	-	126	170083298	yigF	ECDH10B_4008	-	inner membrane protein
3636	 32.81	-2	4099756..4100136	-	126	170083299	yigG	ECDH10B_4009	-	inner membrane protein
3637	 50.62	0	4100231..4101121	-	296	170083300	rarD	ECDH10B_4010	-	chloramphenical resistance permease
3638	 53.21	0	4101173..4101640	-	155	170083301	yigI	ECDH10B_4011	-	hypothetical protein
3639	 51.26	0	4101805..4102674	+	289	170083302	pldA	ECDH10B_4012	-	outer membrane phospholipase A
3640	 55.14	0	4102807..4104636	+	609	170083303	recQ	ECDH10B_4013	-	ATP-dependent DNA helicase
3641	 52.50	0	4104700..4105320	+	206	170083304	rhtC	ECDH10B_4014	-	threonine efflux system
3642	 52.17	0	4105382..4106002	-	206	170083305	rhtB	ECDH10B_4015	-	neutral amino-acid efflux system
3643	 53.76	0	4106113..4107135	+	340	170083306	pldB	ECDH10B_4016	-	lysophospholipase L(2)
3644	 51.56	0	4107143..4107943	+	266	170083307	yigL	ECDH10B_4017	-	hydrolase
3645	 56.29	+1	4108806..4109759	-	317	170083308	metR	ECDH10B_4019	-	DNA-binding transcriptional activator, homocysteine-binding
3646	 56.23	+1	4109996..4112257	+	753	170083309	metE	ECDH10B_4020	-	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase
3647	 54.53	0	4112297..4113112	-	271	170083310	ysgA	ECDH10B_4021	-	hydrolase
3648	 54.07	0	4113374..4114135	+	253	170083311	udp	ECDH10B_4022	-	uridine phosphorylase
3649	 53.08	0	4114276..4115703	+	475	170083312	rmuC	ECDH10B_4023	-	recombination limiting protein
3650	 52.12	0	4115798..4116553	+	251	170083313	ubiE	ECDH10B_4024	-	bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase
3651	 55.78	0	4116567..4117172	+	201	170083314	yigP	ECDH10B_4025	-	hypothetical protein
3652	 49.97	0	4117169..4118809	+	546	170083315	ubiB	ECDH10B_4026	-	2-octaprenylphenol hydroxylase
3653	 45.56	-1	4118888..4119157	+	89	170083316	tatA	ECDH10B_4027	-	TatABCE protein translocation system subunit
3654	 55.43	0	4119161..4119676	+	171	170083317	tatB	ECDH10B_4028	-	TatABCE protein translocation system subunit
3655	 51.61	0	4119679..4120455	+	258	170083318	tatC	ECDH10B_4029	-	TatABCE protein translocation system subunit
3656	 54.28	0	4120497..4121279	+	260	170083319	tatD	ECDH10B_4030	-	Mg-dependent DNase
3657	 49.69	0	4121276..4121764	-	162	170083320	rfaH	ECDH10B_4031	-	DNA-binding transcriptional antiterminator
3658	 53.82	0	4121931..4123424	+	497	170083321	ubiD	ECDH10B_4032	-	3-octaprenyl-4-hydroxybenzoate decarboxylase
3659	 52.85	0	4123470..4124171	+	233	170083322	fre	ECDH10B_4033	-	flavin reductase
3660	 57.73	+1	4124552..4125715	-	387	170083323	fadA	ECDH10B_4034	-	3-ketoacyl-CoA thiolase (thiolase I)
3661	 55.21	0	4125725..4127914	-	729	170083324	fadB	ECDH10B_4035	-	fused 3-hydroxybutyryl-CoA epimerase and delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase and enoyl-CoA hydratase; 3-hydroxyacyl-CoA dehydrogenase
3662	 53.68	0	4128104..4129435	+	443	170083325	pepQ	ECDH10B_4036	-	proline dipeptidase
3663	 55.61	0	4129435..4130049	+	204	170083326	yigZ	ECDH10B_4037	-	elongation factor
3664	 53.10	0	4130088..4131539	+	483	170083327	trkH	ECDH10B_4038	-	potassium transporter
3665	 51.83	0	4131551..4132096	+	181	170083328	hemG	ECDH10B_4039	-	protoporphyrin oxidase, flavoprotein
3666	 48.73	0	4137849..4138361	-	170	170083329	mobB	ECDH10B_4045	-	molybdopterin-guanine dinucleotide biosynthesis protein B
3667	 50.09	0	4138358..4138942	-	194	170083330	mobA	ECDH10B_4046	-	molybdopterin-guanine dinucleotide synthase
3668	 46.30	-1	4139012..4139281	+	89	170083331	yihD	ECDH10B_4047	-	hypothetical protein
3669	 48.63	0	4139358..4140344	+	328	170083332	yihE	ECDH10B_4048	-	kinase
3670	 48.01	0	4140361..4140987	+	208	170083333	dsbA	ECDH10B_4049	-	periplasmic protein disulfide isomerase I
3671	 41.65	-1	4141142..4142572	+	476	170083334	yihF	ECDH10B_4050	-	hypothetical protein
3672	 45.12	-1	4142613..4143545	-	310	170083335	yihG	ECDH10B_4051	-	endonuclease
3673	 51.96	0	4143909..4146695	+	928	170083336	polA	ECDH10B_4052	-	DNA polymerase I
3674	 52.93	0	4147076..4147672	-	198	170083337	yihA	ECDH10B_4054	-	GTP-binding protein
3675	 52.35	0	4148290..4148799	+	169	170083338	yihI	ECDH10B_4056	-	hypothetical protein
3676	 53.13	0	4148988..4150361	+	457	170083339	hemN	ECDH10B_4057	-	coproporphyrinogen III oxidase, SAM and NAD(P)H dependent, oxygen-independent
3677	 56.95	+1	4150812..4152221	-	469	170083340	glnG	ECDH10B_4058	-	fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator; sigma54 interaction protein
3678	 55.24	0	4152233..4153282	-	349	170083341	glnL	ECDH10B_4059	-	sensory histidine kinase in two-component regulatory system with GlnG
3679	 52.91	0	4153568..4154977	-	469	170083342	glnA	ECDH10B_4060	-	glutamine synthetase
3680	 53.45	0	4155350..4157173	+	607	170083343	bipA	ECDH10B_4061	-	GTP-binding protein
3681	 49.09	0	4157390..4158100	+	236	170083344	yihL	ECDH10B_4062	-	DNA-binding transcriptional regulator
3682	 43.93	-1	4158108..4159088	+	326	170083345	yihM	ECDH10B_4063	-	sugar phosphate isomerase
3683	 45.02	-1	4159190..4160455	+	421	170083346	yihN	ECDH10B_4064	-	transporter
3684	 40.84	-2	4160546..4161238	-	230	170083347	ompL	ECDH10B_4065	-	outer membrane porin L
3685	 45.01	-1	4161306..4162709	-	467	170083348	yihO	ECDH10B_4066	-	predited transporter
3686	 52.38	0	4162752..4164158	-	468	170083349	yihP	ECDH10B_4067	-	transporter
3687	 53.51	0	4164183..4166219	-	678	170083350	yihQ	ECDH10B_4068	-	alpha-glucosidase
3688	 48.22	0	4167195..4168121	-	308	170083351	yihR	ECDH10B_4069	-	aldose-1-epimerase
3689	 53.30	0	4168235..4169476	-	413	170083352	yihS	ECDH10B_4070	-	glucosamine isomerase
3690	 53.81	0	4169493..4170371	-	292	170083353	yihT	ECDH10B_4071	-	aldolase
3691	 55.30	0	4170395..4171291	-	298	170083354	yihU	ECDH10B_4072	-	oxidoreductase
3692	 55.63	0	4171459..4172355	+	298	170083355	yihV	ECDH10B_4073	-	sugar kinase
3693	 52.42	0	4172389..4173174	+	261	170083356	yihW	ECDH10B_4074	-	DNA-binding transcriptional regulator
3694	 50.50	0	4173273..4173872	+	199	170083357	yihX	ECDH10B_4075	-	hydrolase
3695	 50.86	0	4173866..4174738	+	290	170083358	rbn	ECDH10B_4076	-	inner membrane protein
3696	 55.02	0	4174735..4175172	+	145	170083359	dtd	ECDH10B_4077	-	D-Tyr-tRNA(Tyr) deacylase
3697	 55.05	0	4175169..4176158	+	329	170083360	yiiD	ECDH10B_4078	-	acetyltransferase
3698	 47.03	0	4177011..4177229	+	72