IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3560	 48.55	0	3997896..3999308	-	470	170083223	bglB	ECDH10B_3908	-	cryptic phospho-beta-glucosidase B
3561	 51.17	0	3999327..4001204	-	625	170083224	bglF	ECDH10B_3909	-	fused beta-glucoside-specific PTS enzymes: IIA component; IIB component; IIC component
3562	 42.89	-1	4001338..4002174	-	278	170083225	bglG	ECDH10B_3910	-	transcriptional antiterminator of the bgl operon
3563	 52.62	0	4002460..4003185	-	241	170083226	phoU	ECDH10B_3911	-	negative regulator of PhoR/PhoB two-component regulator
3564	 52.33	0	4003200..4003973	-	257	170083227	pstB	ECDH10B_3912	-	phosphate ABC transporter ATP-binding protein
3565	 56.23	+1	4004156..4005046	-	296	170083228	pstA	ECDH10B_3913	-	phosphate ABC transporter permease
3566	 54.69	0	4005046..4006005	-	319	170083229	pstC	ECDH10B_3914	-	phosphate ABC transporter permease
3567	 51.49	0	4006092..4007132	-	346	170083230	pstS	ECDH10B_3915	-	phosphate ABC transporter periplasmic-binding protein
3568	 52.66	0	4009437..4010807	-	456	170083231	glmU	ECDH10B_3917	-	fused N-acetyl glucosamine-1-phosphate uridyltransferase; glucosamine-1-phosphate acetyl transferase
3569	 55.24	0	4011160..4011579	-	139	170083232	atpC	ECDH10B_3918	-	F1 sector of membrane-bound ATP synthase, epsilon subunit
3570	 54.74	0	4011600..4012982	-	460	170083233	atpD	ECDH10B_3919	-	F1 sector of membrane-bound ATP synthase, beta subunit
3571	 53.47	0	4013009..4013872	-	287	170083234	atpG	ECDH10B_3920	-	F1 sector of membrane-bound ATP synthase, gamma subunit
3572	 53.37	0	4013923..4015464	-	513	170083235	atpA	ECDH10B_3921	-	F1 sector of membrane-bound ATP synthase, alpha subunit
3573	 51.87	0	4015477..4016010	-	177	170083236	atpH	ECDH10B_3922	-	F1 sector of membrane-bound ATP synthase, delta subunit
3574	 52.87	0	4016025..4016495	-	156	170083237	atpF	ECDH10B_3923	-	F0 sector of membrane-bound ATP synthase, subunit b
3575	 54.17	0	4016557..4016796	-	79	170083238	atpE	ECDH10B_3924	-	F0 sector of membrane-bound ATP synthase, subunit c
3576	 50.25	0	4016843..4017658	-	271	170083239	atpB	ECDH10B_3925	-	F0 sector of membrane-bound ATP synthase, subunit a
3577	 52.23	0	4017667..4018047	-	126	170083240	atpI	ECDH10B_3926	-	ATP synthase, membrane-bound accesory subunit
3578	 48.72	0	4018664..4019287	-	207	170083241	gidB	ECDH10B_3927	-	methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein
3579	 54.39	0	4019351..4021240	-	629	170083242	gidA	ECDH10B_3928	-	glucose-inhibited cell-division protein
3580	 50.00	0	4021619..4022062	-	147	170083243	mioC	ECDH10B_3930	-	FMN-binding protein MioC
3581	 49.46	0	4022152..4022610	-	152	170083244	asnC	ECDH10B_3931	-	DNA-binding transcriptional dual regulator
3582	 56.50	+1	4022762..4023754	+	330	170083245	asnA	ECDH10B_3932	-	asparagine synthetase A
3583	 52.75	0	4023759..4025210	-	483	170083246	viaA	ECDH10B_3933	-	von Willebrand factor type A domain-containing protein
3584	 51.42	0	4026923..4028791	+	622	170083247	trkD	ECDH10B_3935	-	potassium transporter
3585	 47.62	0	4028958..4029377	+	139	170083248	rbsD	ECDH10B_3936	-	cytoplasmic sugar-binding protein
3586	 51.20	0	4029385..4030890	+	501	170083249	rbsA	ECDH10B_3937	-	sugar ABC transporter ATP-binding protein
3587	 53.42	0	4030895..4031860	+	321	170083250	rbsC	ECDH10B_3938	-	sugar ABC transporter membrane protein
3588	 52.86	0	4031885..4032775	+	296	170083251	rbsB	ECDH10B_3939	-	sugar ABC transporter periplasmic-binding protein
3589	 51.94	0	4032901..4033830	+	309	170083252	rbsK	ECDH10B_3940	-	ribokinase
3590	 49.09	0	4036128..4037555	-	475	170083253	hsrA	ECDH10B_3943	-	multidrug or homocysteine efflux system
3591	 49.35	0	4037578..4038270	-	230	170083254	yieP	ECDH10B_3944	-	transcriptional regulator
3592	 48.45	0	4044071..4044910	-	279	170083255	hdfR	ECDH10B_3951	-	DNA-binding transcriptional regulator
3593	 48.08	0	4045029..4045367	+	112	170083256	yifE	ECDH10B_3952	-	hypothetical protein
3594	 50.81	0	4045392..4046942	-	516	170083257	yifB	ECDH10B_3953	-	transcriptional regulator
3595	 53.54	0	4047265..4047363	+	32	170083258	ilvL	ECDH10B_3954	-	ilvG operon leader peptide
3596	 49.24	0	4049144..4049407	+	87	170083259	ilvM	ECDH10B_3958	-	acetolactate synthase II, small subunit
3597	 54.95	0	4049427..4050356	+	309	170083260	ilvE	ECDH10B_3959	-	branched-chain amino-acid aminotransferase
3598	 58.77	+1	4052274..4053818	+	514	170083261	ilvA	ECDH10B_3961	-	threonine deaminase
3599	 57.61	+1	4053870..4054763	-	297	170083262	ilvY	ECDH10B_3962	-	DNA-binding transcriptional dual regulator
3600	 53.79	0	4054913..4056388	+	491	170083263	ilvC	ECDH10B_3963	-	ketol-acid reductoisomerase, NAD(P)-binding
3601	 51.77	0	4056475..4056756	-	93	170083264	ppiC	ECDH10B_3964	-	peptidyl-prolyl cis-trans isomerase C (rotamase C)
3602	 53.46	0	4057620..4059641	+	673	170083265	rep	ECDH10B_3967	-	DNA helicase and single-stranded DNA-dependent ATPase
3603	 53.67	0	4059688..4061172	-	494	170083266	gpp	ECDH10B_3968	-	guanosine pentaphosphatase/exopolyphosphatase
3604	 52.53	0	4061308..4062573	-	421	170083267	rhlB	ECDH10B_3969	-	ATP-dependent RNA helicase
3605	 50.91	0	4062704..4063033	+	109	170083268	trxA	ECDH10B_3970	-	thioredoxin 1
3606	 49.02	0	4063174..4063275	+	33	170083269	rhoL	ECDH10B_3971	-	Rho operon leader peptide
3607	 50.32	0	4063360..4064619	+	419	170083270	rho	ECDH10B_3972	-	transcription termination factor
3608	 49.46	0	4064859..4065962	+	367	170083271	rfe	ECDH10B_3973	-	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase
3609	 52.72	0	4065974..4067020	+	348	170083272	wzzE	ECDH10B_3974	-	entero common antigen (ECA) polysaccharide chain length modulator
3610	 52.61	0	4067076..4068206	+	376	170083273	rffE	ECDH10B_3975	-	UDP-N-acetylglucosamine 2-epimerase
3611	 53.76	0	4068203..4069465	+	420	170083274	rffD	ECDH10B_3976	-	UDP-N-acetyl-D-mannosamine dehydrogenase
3612	 53.75	0	4069465..4070532	+	355	170083275	rffG	ECDH10B_3977	-	dTDP-D-glucose 4,6-dehydratase
3613	 55.10	0	4070551..4071432	+	293	170083276	rffH	ECDH10B_3978	-	glucose-1-phosphate thymidylyltransferase
3614	 55.56	0	4071410..4072084	+	224	170083277	rffC	ECDH10B_3979	-	dTDP-fucosamine acetyltransferase
3615	 54.38	0	4072089..4073219	+	376	170083278	rffA	ECDH10B_3980	-	dTDP-4-keto-6-deoxy-D-glucose aminotransferase
3616	 53.64	0	4073221..4074471	+	416	170083279	wzxE	ECDH10B_3981	-	lipid III translocase
3617	 52.87	0	4074468..4075547	+	359	170083280	rffT	ECDH10B_3982	-	4-alpha-L-fucosyltransferase
3618	 52.40	0	4075544..4076896	+	450	170083281	wzyE	ECDH10B_3983	-	entero common antigen (ECA) polysaccharide chain polymerase
3619	 53.17	0	4076899..4077639	+	246	170083282	rffM	ECDH10B_3984	-	UDP-N-acetyl-D-mannosaminuronic acid (ManNAcA) transferase
3620	 53.46	0	4077830..4079215	+	461	170083283	yifK	ECDH10B_3985	-	transporter
3621	 52.67	0	4079901..4081136	+	411	170083284	aslB	ECDH10B_3990	-	regulator of arylsulfatase activity
3622	 53.20	0	4081295..4082950	-	551	170083285	aslA	ECDH10B_3991	-	acrylsulfatase-like enzyme
3623	 54.97	0	4083629..4084825	-	398	170083286	hemY	ECDH10B_3993	-	protoheme IX synthesis protein
3624	 52.90	0	4086031..4086771	-	246	170083287	hemD	ECDH10B_3995	-	uroporphyrinogen III synthase
3625	 56.16	+1	4086768..4087709	-	313	170083288	hemC	ECDH10B_3996	-	hydroxymethylbilane synthase
3626	 53.89	0	4090682..4091002	-	106	170083289	cyaY	ECDH10B_3998	-	frataxin, iron-binding and oxidizing protein
3627	 49.79	0	4090793..4091278	+	161	170083290	yzcX	ECDH10B_3999	-	hypothetical protein
3628	 52.45	0	4091465..4091668	+	67	170083291	yifL	ECDH10B_4000	-	lipoprotein
3629	 55.15	0	4091705..4092529	+	274	170083292	dapF	ECDH10B_4001	-	diaminopimelate epimerase
3630	 53.96	0	4093230..4094126	+	298	170083293	xerC	ECDH10B_4003	-	site-specific tyrosine recombinase
3631	 55.79	0	4094126..4094842	+	238	170083294	yigB	ECDH10B_4004	-	hydrolase
3632	 57.70	+1	4094926..4097088	+	720	170083295	uvrD	ECDH10B_4005	-	DNA-dependent ATPase I and helicase II
3633	 47.84	0	4097235..4097999	-	254	170083296	yigE	ECDH10B_4006	-	hypothetical protein
3634	 52.68	0	4098369..4099319	+	316	170083297	corA	ECDH10B_4007	-	magnesium/nickel/cobalt transporter
3635	 34.91	-2	4099362..4099742	-	126	170083298	yigF	ECDH10B_4008	-	inner membrane protein
3636	 32.81	-2	4099756..4100136	-	126	170083299	yigG	ECDH10B_4009	-	inner membrane protein
3637	 50.62	0	4100231..4101121	-	296	170083300	rarD	ECDH10B_4010	-	chloramphenical resistance permease
3638	 53.21	0	4101173..4101640	-	155	170083301	yigI	ECDH10B_4011	-	hypothetical protein
3639	 51.26	0	4101805..4102674	+	289	170083302	pldA	ECDH10B_4012	-	outer membrane phospholipase A
3640	 55.14	0	4102807..4104636	+	609	170083303	recQ	ECDH10B_4013	-	ATP-dependent DNA helicase
3641	 52.50	0	4104700..4105320	+	206	170083304	rhtC	ECDH10B_4014	-	threonine efflux system
3642	 52.17	0	4105382..4106002	-	206	170083305	rhtB	ECDH10B_4015	-	neutral amino-acid efflux system
3643	 53.76	0	4106113..4107135	+	340	170083306	pldB	ECDH10B_4016	-	lysophospholipase L(2)
3644	 51.56	0	4107143..4107943	+	266	170083307	yigL	ECDH10B_4017	-	hydrolase
3645	 56.29	+1	4108806..4109759	-	317	170083308	metR	ECDH10B_4019	-	DNA-binding transcriptional activator, homocysteine-binding
3646	 56.23	+1	4109996..4112257	+	753	170083309	metE	ECDH10B_4020	-	5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase
3647	 54.53	0	4112297..4113112	-	271	170083310	ysgA	ECDH10B_4021	-	hydrolase
3648	 54.07	0	4113374..4114135	+	253	170083311	udp	ECDH10B_4022	-	uridine phosphorylase
3649	 53.08	0	4114276..4115703	+	475	170083312	rmuC	ECDH10B_4023	-	recombination limiting protein
3650	 52.12	0	4115798..4116553	+	251	170083313	ubiE	ECDH10B_4024	-	bifunctional 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase and S-adenosylmethionine:2-DMK methyltransferase
3651	 55.78	0	4116567..4117172	+	201	170083314