IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.13   STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3520	 52.01	0	3951567..3951914	-	115	170083183	yidH	ECDH10B_3859	-	inner membrane protein
3521	 48.00	0	3952022..3952471	+	149	170083184	yidI	ECDH10B_3860	-	inner membrane protein
3522	 52.01	0	3952518..3954011	-	497	170083185	yidJ	ECDH10B_3861	-	sulfatase/phosphatase
3523	 53.50	0	3954008..3955723	-	571	170083186	yidK	ECDH10B_3862	-	transporter
3524	 43.51	-1	3955860..3956783	+	307	170083187	yidL	ECDH10B_3863	-	DNA-binding transcriptional regulator
3525	 51.32	0	3959506..3960222	+	238	170083188	yidP	ECDH10B_3870	-	DNA-binding transcriptional regulator
3526	 52.89	0	3960219..3961880	-	553	170083189	yidE	ECDH10B_3871	-	transporter
3527	 48.95	0	3962076..3962504	-	142	170083190	ibpB	ECDH10B_3872	-	heat shock chaperone
3528	 47.10	0	3962616..3963029	-	137	170083191	ibpA	ECDH10B_3873	-	heat shock chaperone
3529	 53.75	0	3963335..3963667	+	110	170083192	yidQ	ECDH10B_3874	-	outer membrane protein
3530	 54.98	0	3963669..3964883	-	404	170083193	yidR	ECDH10B_3875	-	hypothetical protein
3531	 52.98	0	3966045..3967337	-	430	170083194	dgoT	ECDH10B_3877	-	D-galactonate transporter
3532	 52.83	0	3967457..3968605	-	382	170083195	dgoD	ECDH10B_3878	-	galactonate dehydratase
3533	 59.39	+1	3968602..3969219	-	205	170083196	dgoA	ECDH10B_3879	-	2-oxo-3-deoxygalactonate 6-phosphate aldolase
3534	 54.15	0	3969203..3970081	-	292	170083197	dgoK	ECDH10B_3880	-	2-oxo-3-deoxygalactonate kinase
3535	 55.36	0	3970078..3970767	-	229	170083198	dgoR	ECDH10B_3881	-	DNA-binding transcriptional regulator
3536	 42.92	-1	3971045..3971701	+	218	170083199	yidX	ECDH10B_3882	-	lipoproteinc
3537	 51.05	0	3971747..3972559	-	270	170083200	yidA	ECDH10B_3883	-	hydrolase
3538	 51.13	0	3972674..3973072	-	132	170083201	yidB	ECDH10B_3884	-	hypothetical protein
3539	 55.03	0	3975755..3976828	-	357	170083202	recF	ECDH10B_3886	-	gap repair protein
3540	 54.22	0	3976828..3977928	-	366	170083203	dnaN	ECDH10B_3887	-	DNA polymerase III, beta subunit
3541	 51.77	0	3979943..3980083	+	46	170083204	rpmH	ECDH10B_3889	-	50S ribosomal subunit protein L34
3542	 55.83	0	3980100..3980459	+	119	170083205	rnpA	ECDH10B_3890	-	protein C5 component of RNase P
3543	 54.65	0	3980423..3980680	+	85	170083206	yidD	ECDH10B_3891	-	hypothetical protein
3544	 53.67	0	3980683..3982329	+	548	170083207	yidC	ECDH10B_3892	-	cytoplasmic insertase into membrane protein, Sec system
3545	 56.34	+1	3982435..3983799	+	454	170083208	trmE	ECDH10B_3893	-	GTPase
3546	 34.67	-2	3984042..3984116	+	24	170083209	tnaC	ECDH10B_3894	-	tryptophanase leader peptide
3547	 50.85	0	3984337..3985752	+	471	170083210	tnaA	ECDH10B_3895	-	tryptophanase/L-cysteine desulfhydrase, PLP-dependent
3548	 46.47	0	3985843..3987090	+	415	170083211	tnaB	ECDH10B_3896	-	tryptophan transporter of low affinity
3549	 53.06	0	3987222..3988397	+	391	170083212	mdtL	ECDH10B_3897	-	multidrug efflux system protein
3550	 52.19	0	3988372..3989331	+	319	170083213	yidZ	ECDH10B_3898	-	DNA-binding transcriptional regulator
3551	 52.10	0	3989476..3990237	+	253	170083214	yieE	ECDH10B_3899	-	phosphopantetheinyl transferase
3552	 52.73	0	3990259..3990825	+	188	170083215	yieF	ECDH10B_3900	-	chromate reductase, class I, flavoprotein
3553	 53.74	0	3990879..3992216	-	445	170083216	yieG	ECDH10B_3901	-	inner membrane protein
3554	 48.05	0	3992381..3993046	+	221	170083217	yieH	ECDH10B_3902	-	hydrolase
3555	 43.80	-1	3993113..3993580	+	155	170083218	yieI	ECDH10B_3903	-	inner membrane protein
3556	 44.56	-1	3993629..3994216	+	195	170083219	cbrC	ECDH10B_3904	-	hypothetical protein
3557	 49.52	0	3994278..3995000	-	240	170083220	yieK	ECDH10B_3905	-	6-phosphogluconolactonase
3558	 49.54	0	3995015..3996211	-	398	170083221	yieL	ECDH10B_3906	-	xylanase
3559	 45.15	-1	3996211..3997827	-	538	170083222	bglH	ECDH10B_3907	-	carbohydrate-specific outer membrane porin, cryptic
3560	 48.55	0	3997896..3999308	-	470	170083223	bglB	ECDH10B_3908	-	cryptic phospho-beta-glucosidase B
3561	 51.17	0	3999327..4001204	-	625	170083224	bglF	ECDH10B_3909	-	fused beta-glucoside-specific PTS enzymes: IIA component; IIB component; IIC component
3562	 42.89	-1	4001338..4002174	-	278	170083225	bglG	ECDH10B_3910	-	transcriptional antiterminator of the bgl operon
3563	 52.62	0	4002460..4003185	-	241	170083226	phoU	ECDH10B_3911	-	negative regulator of PhoR/PhoB two-component regulator
3564	 52.33	0	4003200..4003973	-	257	170083227	pstB	ECDH10B_3912	-	phosphate ABC transporter ATP-binding protein
3565	 56.23	+1	4004156..4005046	-	296	170083228	pstA	ECDH10B_3913	-	phosphate ABC transporter permease
3566	 54.69	0	4005046..4006005	-	319	170083229	pstC	ECDH10B_3914	-	phosphate ABC transporter permease
3567	 51.49	0	4006092..4007132	-	346	170083230	pstS	ECDH10B_3915	-	phosphate ABC transporter periplasmic-binding protein
3568	 52.66	0	4009437..4010807	-	456	170083231	glmU	ECDH10B_3917	-	fused N-acetyl glucosamine-1-phosphate uridyltransferase; glucosamine-1-phosphate acetyl transferase
3569	 55.24	0	4011160..4011579	-	139	170083232	atpC	ECDH10B_3918	-	F1 sector of membrane-bound ATP synthase, epsilon subunit
3570	 54.74	0	4011600..4012982	-	460	170083233	atpD	ECDH10B_3919	-	F1 sector of membrane-bound ATP synthase, beta subunit
3571	 53.47	0	4013009..4013872	-	287	170083234	atpG	ECDH10B_3920	-	F1 sector of membrane-bound ATP synthase, gamma subunit
3572	 53.37	0	4013923..4015464	-	513	170083235	atpA	ECDH10B_3921	-	F1 sector of membrane-bound ATP synthase, alpha subunit
3573	 51.87	0	4015477..4016010	-	177	170083236	atpH	ECDH10B_3922	-	F1 sector of membrane-bound ATP synthase, delta subunit
3574	 52.87	0	4016025..4016495	-	156	170083237	atpF	ECDH10B_3923	-	F0 sector of membrane-bound ATP synthase, subunit b
3575	 54.17	0	4016557..4016796	-	79	170083238	atpE	ECDH10B_3924	-	F0 sector of membrane-bound ATP synthase, subunit c
3576	 50.25	0	4016843..4017658	-	271	170083239	atpB	ECDH10B_3925	-	F0 sector of membrane-bound ATP synthase, subunit a
3577	 52.23	0	4017667..4018047	-	126	170083240	atpI	ECDH10B_3926	-	ATP synthase, membrane-bound accesory subunit
3578	 48.72	0	4018664..4019287	-	207	170083241	gidB	ECDH10B_3927	-	methyltransferase, SAM-dependent methyltransferase, glucose-inhibited cell-division protein
3579	 54.39	0	4019351..4021240	-	629	170083242	gidA	ECDH10B_3928	-	glucose-inhibited cell-division protein
3580	 50.00	0	4021619..4022062	-	147	170083243	mioC	ECDH10B_3930	-	FMN-binding protein MioC
3581	 49.46	0	4022152..4022610	-	152	170083244	asnC	ECDH10B_3931	-	DNA-binding transcriptional dual regulator
3582	 56.50	+1	4022762..4023754	+	330	170083245	asnA	ECDH10B_3932	-	asparagine synthetase A
3583	 52.75	0	4023759..4025210	-	483	170083246	viaA	ECDH10B_3933	-	von Willebrand factor type A domain-containing protein
3584	 51.42	0	4026923..4028791	+	622	170083247	trkD	ECDH10B_3935	-	potassium transporter
3585	 47.62	0	4028958..4029377	+	139	170083248	rbsD	ECDH10B_3936	-	cytoplasmic sugar-binding protein
3586	 51.20	0	4029385..4030890	+	501	170083249	rbsA	ECDH10B_3937	-	sugar ABC transporter ATP-binding protein
3587	 53.42	0	4030895..4031860	+	321	170083250	rbsC	ECDH10B_3938	-	sugar ABC transporter membrane protein
3588	 52.86	0	4031885..4032775	+	296	170083251	rbsB	ECDH10B_3939	-	sugar ABC transporter periplasmic-binding protein
3589	 51.94	0	4032901..4033830	+	309	170083252	rbsK	ECDH10B_3940	-	ribokinase
3590	 49.09	0	4036128..4037555	-	475	170083253	hsrA	ECDH10B_3943	-	multidrug or homocysteine efflux system
3591	 49.35	0	4037578..4038270	-	230	170083254	yieP	ECDH10B_3944	-	transcriptional regulator
3592	 48.45	0	4044071..4044910	-	279	170083255	hdfR	ECDH10B_3951	-	DNA-binding transcriptional regulator
3593	 48.08	0	4045029..4045367	+	112	170083256	yifE	ECDH10B_3952	-	hypothetical protein
3594	 50.81	0	4045392..4046942	-	516	170083257	yifB	ECDH10B_3953	-	transcriptional regulator
3595	 53.54	0	4047265..4047363	+	32	170083258	ilvL	ECDH10B_3954	-	ilvG operon leader peptide
3596	 49.24	0	4049144..4049407	+	87	170083259	ilvM	ECDH10B_3958	-	acetolactate synthase II, small subunit
3597	 54.95	0	4049427..4050356	+	309	170083260	ilvE	ECDH10B_3959	-	branched-chain amino-acid aminotransferase
3598	 58.77	+1	4052274..4053818	+	514	170083261	ilvA	ECDH10B_3961	-	threonine deaminase
3599	 57.61	+1	4053870..4054763	-	297	170083262	ilvY	ECDH10B_3962	-	DNA-binding transcriptional dual regulator
3600	 53.79	0	4054913..4056388	+	491	170083263	ilvC	ECDH10B_3963	-	ketol-acid reductoisomerase, NAD(P)-binding
3601	 51.77	0	4056475..4056756	-	93	170083264	ppiC	ECDH10B_3964	-	peptidyl-prolyl cis-trans isomerase C (rotamase C)
3602	 53.46	0	4057620..4059641	+	673	170083265	rep	ECDH10B_3967	-	DNA helicase and single-stranded DNA-dependent ATPase
3603	 53.67	0	4059688..4061172	-	494	170083266	gpp	ECDH10B_3968	-	guanosine pentaphosphatase/exopolyphosphatase
3604	 52.53	0	4061308..4062573	-	421	170083267	rhlB	ECDH10B_3969	-	ATP-dependent RNA helicase
3605	 50.91	0	4062704..4063033	+	109	170083268	trxA	ECDH10B_3970	-	thioredoxin 1
3606	 49.02	0	4063174..4063275	+	33	170083269	rhoL	ECDH10B_3971	-	Rho operon leader peptide
3607	 50.32	0	4063360..4064619	+	419	170083270	rho	ECDH10B_3972	-	transcription termination factor
3608	 49.46	0	4064859..4065962	+	367	170083271	rfe	ECDH10B_3973	-	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase
3609	 52.72	0	4065974..4067020	+	348	170083272	wzzE	ECDH10B_3974	-	entero common antigen (ECA) polysaccharide chain length modulator
3610	 52.61	0	4067076..4068206	+	376	170083273	rffE	ECDH10B_3975	-	UDP-N-acetylglucosamine 2-epimerase
3611	 53.76	0	4068203..4069465	+	420	170083274	rffD	ECDH10B_3976	-	UDP-N-acetyl-D-mannosamine dehydrogenase
3612	 53.75	0	4069465..4070532	+	355