IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3468	 31.01	-2	3893839..3894912	-	357	170083131	rfaK	ECDH10B_3805	-	lipopolysaccharide core biosynthesis
3469	 32.51	-2	3894945..3895796	-	283	170083132	rfaZ	ECDH10B_3806	-	lipopolysaccharide core biosynthesis protein
3470	 35.34	-2	3895867..3896565	-	232	170083133	rfaY	ECDH10B_3807	-	lipopolysaccharide core biosynthesis protein
3471	 33.82	-2	3896583..3897599	-	338	170083134	rfaJ	ECDH10B_3808	-	UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase
3472	 36.18	-2	3897639..3898658	-	339	170083135	rfaI	ECDH10B_3809	-	UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase
3473	 39.37	-2	3898658..3899767	-	369	170083136	rfaB	ECDH10B_3810	-	UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase
3474	 26.82	-2	3899781..3900716	-	311	170083137	rfaS	ECDH10B_3811	-	lipopolysaccharide core biosynthesis protein
3475	 43.36	-1	3900753..3901550	-	265	170083138	rfaP	ECDH10B_3812	-	kinase that phosphorylates core heptose of lipopolysaccharide
3476	 44.80	-1	3901543..3902667	-	374	170083139	rfaG	ECDH10B_3813	-	glucosyltransferase I
3477	 44.64	-1	3902664..3903698	-	344	170083140	rfaQ	ECDH10B_3814	-	lipopolysaccharide core biosynthesis protein
3478	 53.91	0	3904140..3905417	+	425	170083141	kdtA	ECDH10B_3815	-	3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)
3479	 52.71	0	3905425..3905904	+	159	170083142	coaD	ECDH10B_3816	-	pantetheine-phosphate adenylyltransferase
3480	 53.83	0	3905943..3906752	-	269	170083143	mutM	ECDH10B_3817	-	formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase
3481	 40.48	-2	3906850..3907017	-	55	170083144	rpmG	ECDH10B_3818	-	50S ribosomal subunit protein L33
3482	 53.16	0	3907038..3907274	-	78	170083145	rpmB	ECDH10B_3819	-	50S ribosomal subunit protein L28
3483	 47.98	0	3907491..3908159	-	222	170083146	yicR	ECDH10B_3820	-	protein associated with replication fork, DNA repair protein
3484	 53.64	0	3908331..3909551	+	406	170083147	dfp	ECDH10B_3821	-	fused 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding
3485	 54.61	0	3909532..3909987	+	151	170083148	dut	ECDH10B_3822	-	deoxyuridinetriphosphatase
3486	 53.10	0	3910094..3910690	+	198	170083149	ttk	ECDH10B_3823	-	division inhibitor
3487	 53.12	0	3910727..3911368	-	213	170083150	pyrE	ECDH10B_3824	-	orotate phosphoribosyltransferase
3488	 53.82	0	3912277..3913140	+	287	170083151	yicC	ECDH10B_3826	-	hypothetical protein
3489	 45.82	-1	3913361..3914185	+	274	170083152	dinD	ECDH10B_3827	-	DNA-damage-inducible protein
3490	 53.40	0	3914475..3915092	+	205	170083153	yicG	ECDH10B_3828	-	inner membrane protein
3491	 52.58	0	3915089..3916771	-	560	170083154	ligB	ECDH10B_3829	-	DNA ligase, NAD(+)-dependent
3492	 49.04	0	3917029..3917652	+	207	170083155	gmk	ECDH10B_3830	-	guanylate kinase
3493	 53.26	0	3917707..3917982	+	91	170083156	rpoZ	ECDH10B_3831	-	RNA polymerase, omega subunit
3494	 53.66	0	3918001..3920115	+	704	170083157	spoT	ECDH10B_3832	-	bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
3495	 55.36	0	3920122..3920811	+	229	170083158	spoU	ECDH10B_3833	-	tRNA (guanosine-2'-O-)-methyltransferase
3496	 57.20	+1	3920817..3922898	+	693	170083159	recG	ECDH10B_3834	-	ATP-dependent DNA helicase
3497	 53.65	0	3923067..3924272	-	401	170083160	gltS	ECDH10B_3835	-	glutamate transporter
3498	 54.89	0	3924552..3925943	+	463	170083161	yicE	ECDH10B_3836	-	transporter
3499	 54.21	0	3926064..3927773	+	569	170083162	yicH	ECDH10B_3837	-	hypothetical protein
3500	 52.05	0	3927826..3930144	-	772	170083163	yicI	ECDH10B_3838	-	alpha-glucosidase
3501	 49.39	0	3930154..3931536	-	460	170083164	yicJ	ECDH10B_3839	-	transporter
3502	 46.08	-1	3932560..3933744	+	394	170083165	setC	ECDH10B_3841	-	sugar efflux system
3503	 48.70	0	3933855..3934778	+	307	170083166	yicL	ECDH10B_3842	-	inner membrane protein
3504	 47.37	0	3934782..3935600	-	272	170083167	nlpA	ECDH10B_3843	-	cytoplasmic membrane lipoprotein-28
3505	 42.86	-1	3935822..3936115	+	97	170083168	yicS	ECDH10B_3844	-	hypothetical protein
3506	 52.21	0	3936156..3937511	-	451	170083169	yicM	ECDH10B_3845	-	transporter
3507	 52.76	0	3937557..3938009	-	150	170083170	yicN	ECDH10B_3846	-	hypothetical protein
3508	 48.31	0	3938062..3939396	-	444	170083171	yicO	ECDH10B_3847	-	xanthine/uracil permase
3509	 54.61	0	3939571..3941337	+	588	170083172	ade	ECDH10B_3848	-	cryptic adenine deaminase
3510	 52.87	0	3941383..3942774	-	463	170083173	uhpT	ECDH10B_3849	-	hexose phosphate transporter
3511	 55.00	0	3942912..3944231	-	439	170083174	uhpC	ECDH10B_3850	-	membrane protein regulates uhpT expression
3512	 57.09	+1	3944241..3945743	-	500	170083175	uhpB	ECDH10B_3851	-	sensory histidine kinase in two-component regulatory sytem with UhpA
3513	 58.88	+1	3945743..3946333	-	196	170083176	uhpA	ECDH10B_3852	-	DNA-binding response regulator in two-component regulatory system wtih UhpB
3514	 48.45	0	3946409..3946699	-	96	170083177	ilvN	ECDH10B_3853	-	acetolactate synthase I, small subunit
3515	 56.31	+1	3946703..3948391	-	562	170083178	ilvB	ECDH10B_3854	-	acetolactate synthase I, large subunit
3516	 58.59	+1	3948497..3948595	-	32	170083179	ivbL	ECDH10B_3855	-	ilvB operon leader peptide
3517	 57.13	+1	3949529..3950713	+	394	170083180	emrD	ECDH10B_3856	-	multidrug efflux system protein
3518	 53.61	0	3950721..3951218	-	165	170083181	yidF	ECDH10B_3857	-	DNA-binding transcriptional regulator
3519	 50.41	0	3951215..3951577	-	120	170083182	yidG	ECDH10B_3858	-	inner membrane protein
3520	 52.01	0	3951567..3951914	-	115	170083183	yidH	ECDH10B_3859	-	inner membrane protein
3521	 48.00	0	3952022..3952471	+	149	170083184	yidI	ECDH10B_3860	-	inner membrane protein
3522	 52.01	0	3952518..3954011	-	497	170083185	yidJ	ECDH10B_3861	-	sulfatase/phosphatase
3523	 53.50	0	3954008..3955723	-	571	170083186	yidK	ECDH10B_3862	-	transporter
3524	 43.51	-1	3955860..3956783	+	307	170083187	yidL	ECDH10B_3863	-	DNA-binding transcriptional regulator
3525	 51.32	0	3959506..3960222	+	238	170083188	yidP	ECDH10B_3870	-	DNA-binding transcriptional regulator
3526	 52.89	0	3960219..3961880	-	553	170083189	yidE	ECDH10B_3871	-	transporter
3527	 48.95	0	3962076..3962504	-	142	170083190	ibpB	ECDH10B_3872	-	heat shock chaperone
3528	 47.10	0	3962616..3963029	-	137	170083191	ibpA	ECDH10B_3873	-	heat shock chaperone
3529	 53.75	0	3963335..3963667	+	110	170083192	yidQ	ECDH10B_3874	-	outer membrane protein
3530	 54.98	0	3963669..3964883	-	404	170083193	yidR	ECDH10B_3875	-	hypothetical protein
3531	 52.98	0	3966045..3967337	-	430	170083194	dgoT	ECDH10B_3877	-	D-galactonate transporter
3532	 52.83	0	3967457..3968605	-	382	170083195	dgoD	ECDH10B_3878	-	galactonate dehydratase
3533	 59.39	+1	3968602..3969219	-	205	170083196	dgoA	ECDH10B_3879	-	2-oxo-3-deoxygalactonate 6-phosphate aldolase
3534	 54.15	0	3969203..3970081	-	292	170083197	dgoK	ECDH10B_3880	-	2-oxo-3-deoxygalactonate kinase
3535	 55.36	0	3970078..3970767	-	229	170083198	dgoR	ECDH10B_3881	-	DNA-binding transcriptional regulator
3536	 42.92	-1	3971045..3971701	+	218	170083199	yidX	ECDH10B_3882	-	lipoproteinc
3537	 51.05	0	3971747..3972559	-	270	170083200	yidA	ECDH10B_3883	-	hydrolase
3538	 51.13	0	3972674..3973072	-	132	170083201	yidB	ECDH10B_3884	-	hypothetical protein
3539	 55.03	0	3975755..3976828	-	357	170083202	recF	ECDH10B_3886	-	gap repair protein
3540	 54.22	0	3976828..3977928	-	366	170083203	dnaN	ECDH10B_3887	-	DNA polymerase III, beta subunit
3541	 51.77	0	3979943..3980083	+	46	170083204	rpmH	ECDH10B_3889	-	50S ribosomal subunit protein L34
3542	 55.83	0	3980100..3980459	+	119	170083205	rnpA	ECDH10B_3890	-	protein C5 component of RNase P
3543	 54.65	0	3980423..3980680	+	85	170083206	yidD	ECDH10B_3891	-	hypothetical protein
3544	 53.67	0	3980683..3982329	+	548	170083207	yidC	ECDH10B_3892	-	cytoplasmic insertase into membrane protein, Sec system
3545	 56.34	+1	3982435..3983799	+	454	170083208	trmE	ECDH10B_3893	-	GTPase
3546	 34.67	-2	3984042..3984116	+	24	170083209	tnaC	ECDH10B_3894	-	tryptophanase leader peptide
3547	 50.85	0	3984337..3985752	+	471	170083210	tnaA	ECDH10B_3895	-	tryptophanase/L-cysteine desulfhydrase, PLP-dependent
3548	 46.47	0	3985843..3987090	+	415	170083211	tnaB	ECDH10B_3896	-	tryptophan transporter of low affinity
3549	 53.06	0	3987222..3988397	+	391	170083212	mdtL	ECDH10B_3897	-	multidrug efflux system protein
3550	 52.19	0	3988372..3989331	+	319	170083213	yidZ	ECDH10B_3898	-	DNA-binding transcriptional regulator
3551	 52.10	0	3989476..3990237	+	253	170083214	yieE	ECDH10B_3899	-	phosphopantetheinyl transferase
3552	 52.73	0	3990259..3990825	+	188	170083215	yieF	ECDH10B_3900	-	chromate reductase, class I, flavoprotein
3553	 53.74	0	3990879..3992216	-	445	170083216	yieG	ECDH10B_3901	-	inner membrane protein
3554	 48.05	0	3992381..3993046	+	221	170083217	yieH	ECDH10B_3902	-	hydrolase
3555	 43.80	-1	3993113..3993580	+	155	170083218	yieI	ECDH10B_3903	-	inner membrane protein
3556	 44.56	-1	3993629..3994216	+	195	170083219	cbrC	ECDH10B_3904	-	hypothetical protein
3557	 49.52	0	3994278..3995000	-	240	170083220	yieK	ECDH10B_3905	-	6-phosphogluconolactonase
3558	 49.54	0	3995015..3996211	-	398	170083221	yieL	ECDH10B_3906	-	xylanase
3559	 45.15	-1	3996211..3997827	-	538	170083222	bglH	ECDH10B_3907	-	carbohydrate-specific outer membrane porin, cryptic
3560	 48.55	0	3997896..3999308	-	470	170083223	bglB	ECDH10B_3908	-	cryptic phospho-beta-glucosidase B
3561	 51.17	0	3999327..4001204	-	625