version 1.0
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137 4126 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3464 50.91 0 3889587..3890519 + 310 170083127 rfaD ECDH10B_3801 - ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding 3465 53.68 0 3890529..3891575 + 348 170083128 rfaF ECDH10B_3802 - ADP-heptose:LPS heptosyltransferase II 3466 51.04 0 3891579..3892538 + 319 170083129 rfaC ECDH10B_3803 - ADP-heptose:LPS heptosyl transferase I 3467 31.90 -2 3892548..3893807 + 419 170083130 rfaL ECDH10B_3804 - O-antigen ligase 3468 31.01 -2 3893839..3894912 - 357 170083131 rfaK ECDH10B_3805 - lipopolysaccharide core biosynthesis 3469 32.51 -2 3894945..3895796 - 283 170083132 rfaZ ECDH10B_3806 - lipopolysaccharide core biosynthesis protein 3470 35.34 -2 3895867..3896565 - 232 170083133 rfaY ECDH10B_3807 - lipopolysaccharide core biosynthesis protein 3471 33.82 -2 3896583..3897599 - 338 170083134 rfaJ ECDH10B_3808 - UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase 3472 36.18 -2 3897639..3898658 - 339 170083135 rfaI ECDH10B_3809 - UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase 3473 39.37 -2 3898658..3899767 - 369 170083136 rfaB ECDH10B_3810 - UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase 3474 26.82 -2 3899781..3900716 - 311 170083137 rfaS ECDH10B_3811 - lipopolysaccharide core biosynthesis protein 3475 43.36 -1 3900753..3901550 - 265 170083138 rfaP ECDH10B_3812 - kinase that phosphorylates core heptose of lipopolysaccharide 3476 44.80 -1 3901543..3902667 - 374 170083139 rfaG ECDH10B_3813 - glucosyltransferase I 3477 44.64 -1 3902664..3903698 - 344 170083140 rfaQ ECDH10B_3814 - lipopolysaccharide core biosynthesis protein 3478 53.91 0 3904140..3905417 + 425 170083141 kdtA ECDH10B_3815 - 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) 3479 52.71 0 3905425..3905904 + 159 170083142 coaD ECDH10B_3816 - pantetheine-phosphate adenylyltransferase 3480 53.83 0 3905943..3906752 - 269 170083143 mutM ECDH10B_3817 - formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase 3481 40.48 -2 3906850..3907017 - 55 170083144 rpmG ECDH10B_3818 - 50S ribosomal subunit protein L33 3482 53.16 0 3907038..3907274 - 78 170083145 rpmB ECDH10B_3819 - 50S ribosomal subunit protein L28 3483 47.98 0 3907491..3908159 - 222 170083146 yicR ECDH10B_3820 - protein associated with replication fork, DNA repair protein 3484 53.64 0 3908331..3909551 + 406 170083147 dfp ECDH10B_3821 - fused 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding 3485 54.61 0 3909532..3909987 + 151 170083148 dut ECDH10B_3822 - deoxyuridinetriphosphatase 3486 53.10 0 3910094..3910690 + 198 170083149 ttk ECDH10B_3823 - division inhibitor 3487 53.12 0 3910727..3911368 - 213 170083150 pyrE ECDH10B_3824 - orotate phosphoribosyltransferase 3488 53.82 0 3912277..3913140 + 287 170083151 yicC ECDH10B_3826 - hypothetical protein 3489 45.82 -1 3913361..3914185 + 274 170083152 dinD ECDH10B_3827 - DNA-damage-inducible protein 3490 53.40 0 3914475..3915092 + 205 170083153 yicG ECDH10B_3828 - inner membrane protein 3491 52.58 0 3915089..3916771 - 560 170083154 ligB ECDH10B_3829 - DNA ligase, NAD(+)-dependent 3492 49.04 0 3917029..3917652 + 207 170083155 gmk ECDH10B_3830 - guanylate kinase 3493 53.26 0 3917707..3917982 + 91 170083156 rpoZ ECDH10B_3831 - RNA polymerase, omega subunit 3494 53.66 0 3918001..3920115 + 704 170083157 spoT ECDH10B_3832 - bifunctional (p)ppGpp synthetase II and guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 3495 55.36 0 3920122..3920811 + 229 170083158 spoU ECDH10B_3833 - tRNA (guanosine-2'-O-)-methyltransferase 3496 57.20 +1 3920817..3922898 + 693 170083159 recG ECDH10B_3834 - ATP-dependent DNA helicase 3497 53.65 0 3923067..3924272 - 401 170083160 gltS ECDH10B_3835 - glutamate transporter 3498 54.89 0 3924552..3925943 + 463 170083161 yicE ECDH10B_3836 - transporter 3499 54.21 0 3926064..3927773 + 569 170083162 yicH ECDH10B_3837 - hypothetical protein 3500 52.05 0 3927826..3930144 - 772 170083163 yicI ECDH10B_3838 - alpha-glucosidase 3501 49.39 0 3930154..3931536 - 460 170083164 yicJ ECDH10B_3839 - transporter 3502 46.08 -1 3932560..3933744 + 394 170083165 setC ECDH10B_3841 - sugar efflux system 3503 48.70 0 3933855..3934778 + 307 170083166 yicL ECDH10B_3842 - inner membrane protein 3504 47.37 0 3934782..3935600 - 272 170083167 nlpA ECDH10B_3843 - cytoplasmic membrane lipoprotein-28 3505 42.86 -1 3935822..3936115 + 97 170083168 yicS ECDH10B_3844 - hypothetical protein 3506 52.21 0 3936156..3937511 - 451 170083169 yicM ECDH10B_3845 - transporter 3507 52.76 0 3937557..3938009 - 150 170083170 yicN ECDH10B_3846 - hypothetical protein 3508 48.31 0 3938062..3939396 - 444 170083171 yicO ECDH10B_3847 - xanthine/uracil permase 3509 54.61 0 3939571..3941337 + 588 170083172 ade ECDH10B_3848 - cryptic adenine deaminase 3510 52.87 0 3941383..3942774 - 463 170083173 uhpT ECDH10B_3849 - hexose phosphate transporter 3511 55.00 0 3942912..3944231 - 439 170083174 uhpC ECDH10B_3850 - membrane protein regulates uhpT expression 3512 57.09 +1 3944241..3945743 - 500 170083175 uhpB ECDH10B_3851 - sensory histidine kinase in two-component regulatory sytem with UhpA 3513 58.88 +1 3945743..3946333 - 196 170083176 uhpA ECDH10B_3852 - DNA-binding response regulator in two-component regulatory system wtih UhpB 3514 48.45 0 3946409..3946699 - 96 170083177 ilvN ECDH10B_3853 - acetolactate synthase I, small subunit 3515 56.31 +1 3946703..3948391 - 562 170083178 ilvB ECDH10B_3854 - acetolactate synthase I, large subunit 3516 58.59 +1 3948497..3948595 - 32 170083179 ivbL ECDH10B_3855 - ilvB operon leader peptide 3517 57.13 +1 3949529..3950713 + 394 170083180 emrD ECDH10B_3856 - multidrug efflux system protein 3518 53.61 0 3950721..3951218 - 165 170083181 yidF ECDH10B_3857 - DNA-binding transcriptional regulator 3519 50.41 0 3951215..3951577 - 120 170083182 yidG ECDH10B_3858 - inner membrane protein 3520 52.01 0 3951567..3951914 - 115 170083183 yidH ECDH10B_3859 - inner membrane protein 3521 48.00 0 3952022..3952471 + 149 170083184 yidI ECDH10B_3860 - inner membrane protein 3522 52.01 0 3952518..3954011 - 497 170083185 yidJ ECDH10B_3861 - sulfatase/phosphatase 3523 53.50 0 3954008..3955723 - 571 170083186 yidK ECDH10B_3862 - transporter 3524 43.51 -1 3955860..3956783 + 307 170083187 yidL ECDH10B_3863 - DNA-binding transcriptional regulator 3525 51.32 0 3959506..3960222 + 238 170083188 yidP ECDH10B_3870 - DNA-binding transcriptional regulator 3526 52.89 0 3960219..3961880 - 553 170083189 yidE ECDH10B_3871 - transporter 3527 48.95 0 3962076..3962504 - 142 170083190 ibpB ECDH10B_3872 - heat shock chaperone 3528 47.10 0 3962616..3963029 - 137 170083191 ibpA ECDH10B_3873 - heat shock chaperone 3529 53.75 0 3963335..3963667 + 110 170083192 yidQ ECDH10B_3874 - outer membrane protein 3530 54.98 0 3963669..3964883 - 404 170083193 yidR ECDH10B_3875 - hypothetical protein 3531 52.98 0 3966045..3967337 - 430 170083194 dgoT ECDH10B_3877 - D-galactonate transporter 3532 52.83 0 3967457..3968605 - 382 170083195 dgoD ECDH10B_3878 - galactonate dehydratase 3533 59.39 +1 3968602..3969219 - 205 170083196 dgoA ECDH10B_3879 - 2-oxo-3-deoxygalactonate 6-phosphate aldolase 3534 54.15 0 3969203..3970081 - 292 170083197 dgoK ECDH10B_3880 - 2-oxo-3-deoxygalactonate kinase 3535 55.36 0 3970078..3970767 - 229 170083198 dgoR ECDH10B_3881 - DNA-binding transcriptional regulator 3536 42.92 -1 3971045..3971701 + 218 170083199 yidX ECDH10B_3882 - lipoproteinc 3537 51.05 0 3971747..3972559 - 270 170083200 yidA ECDH10B_3883 - hydrolase 3538 51.13 0 3972674..3973072 - 132 170083201 yidB ECDH10B_3884 - hypothetical protein 3539 55.03 0 3975755..3976828 - 357 170083202 recF ECDH10B_3886 - gap repair protein 3540 54.22 0 3976828..3977928 - 366 170083203 dnaN ECDH10B_3887 - DNA polymerase III, beta subunit 3541 51.77 0 3979943..3980083 + 46 170083204 rpmH ECDH10B_3889 - 50S ribosomal subunit protein L34 3542 55.83 0 3980100..3980459 + 119 170083205 rnpA ECDH10B_3890 - protein C5 component of RNase P 3543 54.65 0 3980423..3980680 + 85 170083206 yidD ECDH10B_3891 - hypothetical protein 3544 53.67 0 3980683..3982329 + 548 170083207 yidC ECDH10B_3892 - cytoplasmic insertase into membrane protein, Sec system 3545 56.34 +1 3982435..3983799 + 454 170083208 trmE ECDH10B_3893 - GTPase 3546 34.67 -2 3984042..3984116 + 24 170083209 tnaC ECDH10B_3894 - tryptophanase leader peptide 3547 50.85 0 3984337..3985752 + 471 170083210 tnaA ECDH10B_3895 - tryptophanase/L-cysteine desulfhydrase, PLP-dependent 3548 46.47 0 3985843..3987090 + 415 170083211 tnaB ECDH10B_3896 - tryptophan transporter of low affinity 3549 53.06 0 3987222..3988397 + 391 170083212 mdtL ECDH10B_3897 - multidrug efflux system protein 3550 52.19 0 3988372..3989331 + 319 170083213 yidZ ECDH10B_3898 - DNA-binding transcriptional regulator 3551 52.10 0 3989476..3990237 + 253 170083214 yieE ECDH10B_3899 - phosphopantetheinyl transferase 3552 52.73 0 3990259..3990825 + 188 170083215 yieF ECDH10B_3900 - chromate reductase, class I, flavoprotein 3553 53.74 0 3990879..3992216 - 445 170083216 yieG ECDH10B_3901 - inner membrane protein 3554 48.05 0 3992381..3993046 + 221 170083217 yieH ECDH10B_3902 - hydrolase 3555 43.80 -1 3993113..3993580 + 155 170083218 yieI ECDH10B_3903 - inner membrane protein 3556 44.56 -1 3993629..3994216 + 195 170083219 cbrC ECDH10B_3904 - hypothetical protein 3557 49.52 0 3994278..3995000 - 240 170083220 yieK ECDH10B_3905 - 6-phosphogluconolactonase 3558 49.54 0 3995015..3996211 - 398 170083221 yieL ECDH10B_3906 - xylanase 3559 45.15 -1 3996211..3997827 - 538 170083222 bglH ECDH10B_3907 - carbohydrate-specific outer membrane porin, cryptic 3560 48.55 0 3997896..3999308 - 470 170083223 bglB ECDH10B_3908 - cryptic phospho-beta-glucosidase B 3561 51.17 0 3999327..4001204 - 625 170083224 bglF ECDH10B_3909 - fused beta-glucoside-specific PTS enzymes: IIA component; IIB component; IIC component 3562 42.89 -1 4001338..4002174 - 278 170083225 bglG ECDH10B_3910 - transcriptional antiterminator of the bgl operon 3563 52.62 0 4002460..4003185 - 241 170083226 phoU ECDH10B_3911 - negative regulator of PhoR/PhoB two-component regulator 51.13 MEAN 4.76 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0