IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3401	 48.36	0	3815649..3815861	+	70	170083064	cspA	ECDH10B_3735	-	major cold shock protein
3402	 35.29	-2	3816048..3816200	-	50	170083065	hokA	ECDH10B_3736	-	toxic polypeptide, small
3403	 46.17	-1	3816280..3816801	+	173	170083066	insJ	ECDH10B_3737	-	IS150 protein InsA
3404	 42.84	-1	3816798..3817649	+	283	170083067	insK	ECDH10B_3738	-	IS150 protein InsB
3405	 55.41	0	3817928..3819997	-	689	170083068	glyS	ECDH10B_3739	-	glycine tRNA synthetase, beta subunit
3406	 47.67	0	3821013..3821312	-	99	170083069	ysaB	ECDH10B_3741	-	hypothetical protein
3407	 46.79	0	3821487..3822482	+	331	170083070	yiaH	ECDH10B_3742	-	inner membrane protein
3408	 41.10	-2	3822524..3822961	-	145	170083071	yiaA	ECDH10B_3743	-	inner membrane protein
3409	 41.52	-2	3823007..3823348	-	113	170083072	yiaB	ECDH10B_3744	-	inner membrane protein
3410	 54.78	0	3823517..3824971	-	484	170083073	xylB	ECDH10B_3745	-	xylulokinase
3411	 50.87	0	3825043..3826365	-	440	170083074	xylA	ECDH10B_3746	-	D-xylose isomerase
3412	 44.01	-1	3826731..3827723	+	330	170083075	xylF	ECDH10B_3747	-	D-xylose ABC transporter periplasmic-binding protein
3413	 47.08	0	3827801..3829342	+	513	170083076	xylG	ECDH10B_3748	-	D-xylose ABC transporter ATP-binding protein
3414	 53.89	0	3829320..3830501	+	393	170083077	xylH	ECDH10B_3749	-	D-xylose ABC transporter membrane protein
3415	 48.77	0	3830579..3831757	+	392	170083078	xylR	ECDH10B_3750	-	DNA-binding transcriptional activator, xylose-binding
3416	 48.24	0	3831953..3832777	-	274	170083079	bax	ECDH10B_3751	-	hypothetical protein
3417	 52.83	0	3833097..3835127	+	676	170083080	malS	ECDH10B_3752	-	alpha-amylase
3418	 52.15	0	3835305..3836558	+	417	170083081	avtA	ECDH10B_3753	-	valine-pyruvate aminotransferase
3419	 53.59	0	3836709..3837182	-	157	170083082	ysaA	ECDH10B_3754	-	hydrogenase, 4Fe-4S ferredoxin-type component
3420	 52.18	0	3837284..3838132	-	282	170083083	yiaJ	ECDH10B_3755	-	DNA-binding transcriptional repressor
3421	 53.05	0	3838333..3839331	+	332	170083084	yiaK	ECDH10B_3756	-	2,3-diketo-L-gulonate dehydrogenase, NADH-dependent
3422	 45.30	-1	3839343..3839810	+	155	170083085	yiaL	ECDH10B_3757	-	hypothetical protein
3423	 44.09	-1	3839928..3840401	+	157	170083086	yiaM	ECDH10B_3758	-	transporter
3424	 50.86	0	3840404..3841681	+	425	170083087	yiaN	ECDH10B_3759	-	transporter
3425	 51.17	0	3841694..3842680	+	328	170083088	yiaO	ECDH10B_3760	-	transporter
3426	 57.45	+1	3842684..3844180	+	498	170083089	lyxK	ECDH10B_3761	-	L-xylulose kinase
3427	 59.43	+1	3844177..3844839	+	220	170083090	sgbH	ECDH10B_3762	-	3-keto-L-gulonate 6-phosphate decarboxylase
3428	 55.75	0	3844832..3845692	+	286	170083091	sgbU	ECDH10B_3763	-	L-xylulose 5-phosphate 3-epimerase
3429	 57.33	+1	3845686..3846381	+	231	170083092	sgbE	ECDH10B_3764	-	L-ribulose-5-phosphate 4-epimerase
3430	 48.72	0	3846728..3847468	-	246	170083093	yiaT	ECDH10B_3765	-	hypothetical protein
3431	 47.69	0	3847592..3848566	+	324	170083094	yiaU	ECDH10B_3766	-	DNA-binding transcriptional regulator
3432	 50.66	0	3848563..3849699	-	378	170083095	yiaV	ECDH10B_3767	-	membrane fusion protein (MFP) component of efflux pump, signal anchor
3433	 46.60	0	3849705..3850028	-	107	170083096	yiaW	ECDH10B_3768	-	inner membrane protein
3434	 54.78	0	3850573..3852111	-	512	170083097	aldB	ECDH10B_3769	-	aldehyde dehydrogenase B
3435	 50.52	0	3852276..3853427	-	383	170083098	yiaY	ECDH10B_3770	-	Fe-containing alcohol dehydrogenase
3436	 56.37	+1	3853617..3855461	-	614	170083099	selB	ECDH10B_3771	-	selenocysteinyl-tRNA-specific translation factor
3437	 52.71	0	3856947..3857555	-	202	170083100	yibF	ECDH10B_3773	-	glutathione S-transferase
3438	 33.69	-2	3861937..3862779	+	280	170083101	yibA	ECDH10B_3775	-	HEAT repeat-containing lyase
3439	 50.28	0	3862821..3863522	+	233	170083102	yibJ	ECDH10B_3776	-	Rhs-family protein
3440	 32.25	-2	3863777..3864238	+	153	170083103	yibG	ECDH10B_3777	-	hypothetical protein
3441	 52.68	0	3865843..3866979	-	378	170083104	yibH	ECDH10B_3778	-	hypothetical protein
3442	 51.52	0	3866982..3867344	-	120	170083105	yibI	ECDH10B_3779	-	inner membrane protein
3443	 53.87	0	3867881..3869794	+	637	170083106	mtlA	ECDH10B_3780	-	fused mannitol-specific PTS enzymes: IIA components; IIB components; IIC components
3444	 52.39	0	3870024..3871172	+	382	170083107	mtlD	ECDH10B_3781	-	mannitol-1-phosphate dehydrogenase, NAD(P)-binding
3445	 51.02	0	3871172..3871759	+	195	170083108	mtlR	ECDH10B_3782	-	DNA-binding repressor
3446	 49.05	0	3871771..3871980	-	69	170083109	yibT	ECDH10B_3783	-	hypothetical protein
3447	 50.96	0	3872265..3872627	+	120	170083110	yibL	ECDH10B_3784	-	hypothetical protein
3448	 55.13	0	3872999..3874654	+	551	170083111	lldP	ECDH10B_3785	-	L-lactate permease
3449	 54.05	0	3874654..3875430	+	258	170083112	lldR	ECDH10B_3786	-	DNA-binding transcriptional repressor
3450	 55.67	0	3875427..3876617	+	396	170083113	lldD	ECDH10B_3787	-	L-lactate dehydrogenase, FMN-linked
3451	 55.06	0	3876815..3877288	+	157	170083114	yibK	ECDH10B_3788	-	rRNA methylase
3452	 53.53	0	3877341..3878162	-	273	170083115	cysE	ECDH10B_3789	-	serine acetyltransferase
3453	 56.76	+1	3878242..3879261	-	339	170083116	gpsA	ECDH10B_3790	-	glycerol-3-phosphate dehydrogenase (NAD+)
3454	 50.85	0	3879261..3879728	-	155	170083117	secB	ECDH10B_3791	-	protein export chaperone
3455	 52.38	0	3879791..3880042	-	83	170083118	grxC	ECDH10B_3792	-	glutaredoxin 3
3456	 49.54	0	3880184..3880615	-	143	170083119	yibN	ECDH10B_3793	-	rhodanese-related sulfurtransferase
3457	 53.46	0	3880860..3882404	+	514	170083120	gpmI	ECDH10B_3794	-	phosphoglycero mutase III, cofactor-independent
3458	 57.06	+1	3882438..3883697	+	419	170083121	envC	ECDH10B_3795	-	protease with a role in cell division
3459	 52.71	0	3883701..3884660	+	319	170083122	yibQ	ECDH10B_3796	-	polysaccharide deacetylase
3460	 45.99	-1	3884647..3885681	-	344	170083123	yibD	ECDH10B_3797	-	glycosyl transferase
3461	 51.46	0	3885920..3886945	-	341	170083124	tdh	ECDH10B_3798	-	threonine 3-dehydrogenase, NAD(P)-binding
3462	 54.22	0	3886955..3888151	-	398	170083125	kbl	ECDH10B_3799	-	glycine C-acetyltransferase
3463	 37.06	-2	3888426..3889283	-	285	170083126	htrL	ECDH10B_3800	-	hypothetical protein
3464	 50.91	0	3889587..3890519	+	310	170083127	rfaD	ECDH10B_3801	-	ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding
3465	 53.68	0	3890529..3891575	+	348	170083128	rfaF	ECDH10B_3802	-	ADP-heptose:LPS heptosyltransferase II
3466	 51.04	0	3891579..3892538	+	319	170083129	rfaC	ECDH10B_3803	-	ADP-heptose:LPS heptosyl transferase I
3467	 31.90	-2	3892548..3893807	+	419	170083130	rfaL	ECDH10B_3804	-	O-antigen ligase
3468	 31.01	-2	3893839..3894912	-	357	170083131	rfaK	ECDH10B_3805	-	lipopolysaccharide core biosynthesis
3469	 32.51	-2	3894945..3895796	-	283	170083132	rfaZ	ECDH10B_3806	-	lipopolysaccharide core biosynthesis protein
3470	 35.34	-2	3895867..3896565	-	232	170083133	rfaY	ECDH10B_3807	-	lipopolysaccharide core biosynthesis protein
3471	 33.82	-2	3896583..3897599	-	338	170083134	rfaJ	ECDH10B_3808	-	UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase
3472	 36.18	-2	3897639..3898658	-	339	170083135	rfaI	ECDH10B_3809	-	UDP-D-galactose:(glucosyl)lipopolysaccharide-alpha-1,3-D-galactosyltransferase
3473	 39.37	-2	3898658..3899767	-	369	170083136	rfaB	ECDH10B_3810	-	UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase
3474	 26.82	-2	3899781..3900716	-	311	170083137	rfaS	ECDH10B_3811	-	lipopolysaccharide core biosynthesis protein
3475	 43.36	-1	3900753..3901550	-	265	170083138	rfaP	ECDH10B_3812	-	kinase that phosphorylates core heptose of lipopolysaccharide
3476	 44.80	-1	3901543..3902667	-	374	170083139	rfaG	ECDH10B_3813	-	glucosyltransferase I
3477	 44.64	-1	3902664..3903698	-	344	170083140	rfaQ	ECDH10B_3814	-	lipopolysaccharide core biosynthesis protein
3478	 53.91	0	3904140..3905417	+	425	170083141	kdtA	ECDH10B_3815	-	3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)
3479	 52.71	0	3905425..3905904	+	159	170083142	coaD	ECDH10B_3816	-	pantetheine-phosphate adenylyltransferase
3480	 53.83	0	3905943..3906752	-	269	170083143	mutM	ECDH10B_3817	-	formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase
3481	 40.48	-2	3906850..3907017	-	55	170083144	rpmG	ECDH10B_3818	-	50S ribosomal subunit protein L33
3482	 53.16	0	3907038..3907274	-	78	170083145	rpmB	ECDH10B_3819	-	50S ribosomal subunit protein L28
3483	 47.98	0	3907491..3908159	-	222	170083146	yicR	ECDH10B_3820	-	protein associated with replication fork, DNA repair protein
3484	 53.64	0	3908331..3909551	+	406	170083147	dfp	ECDH10B_3821	-	fused 4'-phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine synthetase, FMN-binding
3485	 54.61	0	3909532..3909987	+	151	170083148	dut	ECDH10B_3822	-	deoxyuridinetriphosphatase
3486	 53.10	0	3910094..3910690	+	198	170083149	ttk	ECDH10B_3823	-	division inhibitor
3487	 53.12	0	3910727..3911368	-	213	170083150	pyrE	ECDH10B_3824	-	orotate phosphoribosyltransferase
3488	 53.82	0	3912277..3913140	+	287	170083151	yicC	ECDH10B_3826	-	hypothetical protein
3489	 45.82	-1	3913361..3914185	+	274	170083152	dinD	ECDH10B_3827	-	DNA-damage-inducible protein
3490	 53.40	0	3914475..3915092	+	205	170083153	yicG	ECDH10B_3828	-	inner membrane protein
3491	 52.58	0	3915089..3916771	-	560	170083154	ligB	ECDH10B_3829	-	DNA ligase, NAD(+)-dependent
3492	 49.04	0	3917029..3917652	+	207	170083155	gmk	ECDH10B_3830	-	guanylate kinase
3493	 53.26	0	3917707..3917982	+	91	170083156	rpoZ	ECDH10B_3831	-	RNA polymerase, omega subunit
3494	 53.66	0	3918001..3920115	+	704