IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
294	 54.46	0	326350..327201	+	283	170079957	tauD	ECDH10B_0324	-	taurine dioxygenase, 2-oxoglutarate-dependent
295	 53.95	0	327308..328282	-	324	170079958	hemB	ECDH10B_0325	-	porphobilinogen synthase
296	 30.37	-2	328452..328721	-	89	170079959	ykiB	ECDH10B_0326	-	hypothetical protein
297	 55.13	0	330294..331160	-	288	170079960	insF-2	ECDH10B_0329	-	IS3 element protein InsF
298	 50.16	0	331157..331465	-	102	170079961	insE-2	ECDH10B_0330	-	IS3 element protein InsE
299	 40.36	-2	333016..333684	+	222	170079962	yaiV	ECDH10B_0332	-	DNA-binding transcriptional regulator
300	 55.35	0	333685..334842	-	385	170079963	ampH	ECDH10B_0333	-	beta-lactamase/D-alanine carboxypeptidase
301	 51.35	0	335194..336414	+	406	170079964	sbmA	ECDH10B_0334	-	transporter
302	 53.42	0	336427..337521	+	364	170079965	yaiW	ECDH10B_0335	-	DNA-binding transcriptional regulator
303	 52.43	0	337580..337888	-	102	170079966	yaiY	ECDH10B_0336	-	inner membrane protein
304	 48.83	0	338148..338360	+	70	170079967	yaiZ	ECDH10B_0337	-	inner membrane protein
305	 51.05	0	338384..339478	-	364	170079968	ddlA	ECDH10B_0338	-	D-alanine-D-alanine ligase A
306	 46.36	-1	339941..340201	+	86	170079969	iraP	ECDH10B_0339	-	anti-adaptor protein
307	 53.39	0	340302..341717	+	471	170079970	phoA	ECDH10B_0340	-	alkaline phosphatase
308	 47.66	0	341836..342156	+	106	170079971	psiF	ECDH10B_0341	-	hypothetical protein
309	 53.67	0	342258..343373	+	371	170079972	adrA	ECDH10B_0342	-	diguanylate cyclase
310	 54.57	0	343390..344199	-	269	170079973	proC	ECDH10B_0343	-	pyrroline-5-carboxylate reductase, NAD(P)-binding
311	 56.43	+1	344319..344777	+	152	170079974	yaiI	ECDH10B_0344	-	hypothetical protein
312	 52.19	0	344960..345484	+	174	170079975	aroL	ECDH10B_0345	-	shikimate kinase II
313	 48.44	0	345534..345725	+	63	170079976	yaiA	ECDH10B_0346	-	hypothetical protein
314	 46.46	0	345983..346660	+	225	170079977	aroM	ECDH10B_0347	-	hypothetical protein
315	 51.93	0	346732..347016	+	94	170079978	yaiE	ECDH10B_0348	-	hypothetical protein
316	 48.58	0	347224..347505	+	93	170079979	ykiA	ECDH10B_0349	-	hypothetical protein
317	 51.54	0	347663..348574	-	303	170079980	rdgC	ECDH10B_0350	-	DNA-binding protein, non-specific
318	 55.67	0	348699..349607	+	302	170079981	mak	ECDH10B_0351	-	manno(fructo)kinase
319	 50.72	0	349852..351036	-	394	170079982	araJ	ECDH10B_0352	-	transporter
320	 53.80	0	351162..354308	-	1048	170079983	sbcC	ECDH10B_0353	-	exonuclease, dsDNA, ATP-dependent
321	 53.28	0	354305..355507	-	400	170079984	sbcD	ECDH10B_0354	-	exonuclease, dsDNA, ATP-dependent
322	 54.49	0	355697..356386	+	229	170079985	phoB	ECDH10B_0355	-	DNA-binding response regulator in two-component regulatory system with PhoR (or CreC)
323	 53.01	0	356444..357739	+	431	170079986	phoR	ECDH10B_0356	-	sensory histidine kinase in two-component regulatory system with PhoB
324	 55.61	0	358146..359465	+	439	170079987	brnQ	ECDH10B_0357	-	branched chain amino acid ABC transporter
325	 52.91	0	359541..360914	+	457	170079988	proY	ECDH10B_0358	-	cryptic proline transporter
326	 54.57	0	361070..362887	+	605	170079989	malZ	ECDH10B_0359	-	maltodextrin glucosidase
327	 53.09	0	362892..363473	-	193	170079990	acpH	ECDH10B_0360	-	ACP phosphodiesterase
328	 54.15	0	363566..364636	+	356	170079991	queA	ECDH10B_0361	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
329	 51.33	0	364692..365819	+	375	170079992	tgt	ECDH10B_0362	-	tRNA-guanine transglycosylase
330	 49.55	0	365842..366174	+	110	170079993	yajC	ECDH10B_0363	-	SecYEG protein translocase auxillary subunit
331	 53.19	0	366202..368049	+	615	170079994	secD	ECDH10B_0364	-	SecYEG protein translocase auxillary subunit
332	 51.65	0	368060..369031	+	323	170079995	secF	ECDH10B_0365	-	SecYEG protein translocase auxillary subunit
333	 47.13	0	369160..369507	+	115	170079996	yajD	ECDH10B_0366	-	hypothetical protein
334	 50.51	0	369684..370568	-	294	170079997	tsx	ECDH10B_0367	-	nucleoside channel, receptor of phage T6 and colicin K
335	 47.59	0	370867..371406	-	179	170079998	yajI	ECDH10B_0368	-	lipoprotein
336	 51.33	0	371557..372006	+	149	170079999	nrdR	ECDH10B_0369	-	DNA-binding transcriptional regulator
337	 55.34	0	372010..373113	+	367	170080000	ribD	ECDH10B_0370	-	fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase
338	 52.23	0	373202..373672	+	156	170080001	ribE	ECDH10B_0371	-	riboflavin synthase beta chain
339	 53.81	0	373692..374111	+	139	170080002	nusB	ECDH10B_0372	-	transcription antitermination protein
340	 54.40	0	374189..375166	+	325	170080003	thiL	ECDH10B_0373	-	thiamin-monophosphate kinase
341	 53.18	0	375144..375662	+	172	170080004	pgpA	ECDH10B_0374	-	phosphatidylglycerophosphatase A
342	 53.03	0	375716..376690	-	324	170080005	yajO	ECDH10B_0375	-	oxidoreductase, NAD(P)-binding
343	 54.27	0	376870..378732	-	620	170080006	dxs	ECDH10B_0376	-	1-deoxyxylulose-5-phosphate synthase, thiamine-requiring, FAD-requiring
344	 54.22	0	378757..379656	-	299	170080007	ispA	ECDH10B_0377	-	geranyltranstransferase
345	 55.14	0	379656..379898	-	80	170080008	xseB	ECDH10B_0378	-	exonuclease VII small subunit
346	 52.17	0	380104..381552	+	482	170080009	thiI	ECDH10B_0379	-	sulfurtransferase required for thiamine and 4-thiouridine biosynthesis
347	 56.51	+1	381606..382196	-	196	170080010	yajL	ECDH10B_0380	-	hypothetical protein
348	 51.86	0	382159..383070	-	303	170080011	panE	ECDH10B_0381	-	2-dehydropantoate reductase, NADPH-specific
349	 50.00	0	383238..383729	+	163	170080012	yajQ	ECDH10B_0382	-	nucleotide binding protein
350	 52.60	0	383857..385221	-	454	170080013	yajR	ECDH10B_0383	-	transporter
351	 53.76	0	385370..386260	-	296	170080014	cyoE	ECDH10B_0384	-	protoheme IX farnesyltransferase
352	 49.70	0	386272..386601	-	109	170080015	cyoD	ECDH10B_0385	-	cytochrome o ubiquinol oxidase subunit IV
353	 53.50	0	386601..387215	-	204	170080016	cyoC	ECDH10B_0386	-	cytochrome o ubiquinol oxidase subunit III
354	 52.96	0	387205..389196	-	663	170080017	cyoB	ECDH10B_0387	-	cytochrome o ubiquinol oxidase subunit I
355	 50.95	0	389218..390165	-	315	170080018	cyoA	ECDH10B_0388	-	cytochrome o ubiquinol oxidase subunit II
356	 53.66	0	390625..392100	-	491	170080019	ampG	ECDH10B_0389	-	muropeptide transporter
357	 51.30	0	392144..392722	-	192	170080020	yajG	ECDH10B_0390	-	lipoprotein
358	 48.43	0	393027..393344	+	105	170080021	bolA	ECDH10B_0391	-	regulator of penicillin binding proteins and beta lactamase transcription (morphogene)
359	 51.19	0	393688..394986	+	432	170080022	tig	ECDH10B_0392	-	peptidyl-prolyl cis/trans isomerase (trigger factor)
360	 51.12	0	395232..395855	+	207	170080023	clpP	ECDH10B_0393	-	proteolytic subunit of ClpA-ClpP and ClpX-ClpP ATP-dependent serine proteases
361	 51.53	0	395981..397255	+	424	170080024	clpX	ECDH10B_0394	-	ATPase and specificity subunit of ClpX-ClpP ATP-dependent serine protease
362	 52.31	0	397443..399797	+	784	170080025	lon	ECDH10B_0395	-	DNA-binding ATP-dependent protease La
363	 49.08	0	400006..400278	+	90	170080026	hupB	ECDH10B_0396	-	HU, DNA-binding transcriptional regulator, beta subunit
364	 52.35	0	400470..402341	+	623	170080027	ppiD	ECDH10B_0397	-	peptidyl-prolyl cis-trans isomerase (rotamase D)
365	 54.84	0	402492..402863	+	123	170080028	ybaV	ECDH10B_0398	-	hypothetical protein
366	 46.12	-1	402957..403355	+	132	170080029	ybaW	ECDH10B_0399	-	hypothetical protein
367	 51.72	0	403407..404102	-	231	170080030	queC	ECDH10B_0400	-	enzyme in preQ0 biosynthesis
368	 52.97	0	404167..405867	-	566	170080031	ybaE	ECDH10B_0401	-	ABC transporter periplasmic-binding protein
369	 51.40	0	405967..406785	+	272	170080032	cof	ECDH10B_0402	-	thiamin pyrimidine pyrophosphate hydrolase
370	 51.85	0	406938..407396	+	152	170080033	ybaO	ECDH10B_0403	-	DNA-binding transcriptional regulator
371	 54.03	0	407426..409198	+	590	170080034	mdlA	ECDH10B_0404	-	multidrug ABC transporter ATP-binding protein
372	 56.29	+1	409191..410972	+	593	170080035	mdlB	ECDH10B_0405	-	multidrug ABC transporter ATP-binding protein
373	 50.74	0	411153..411491	+	112	170080036	glnK	ECDH10B_0406	-	nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB
374	 56.18	+1	411521..412807	+	428	170080037	amtB	ECDH10B_0407	-	ammonium transporter
375	 52.50	0	412856..413716	-	286	170080038	tesB	ECDH10B_0408	-	acyl-CoA thioesterase II
376	 53.93	0	413934..414506	+	190	170080039	ybaY	ECDH10B_0409	-	outer membrane lipoprotein
377	 54.10	0	414537..414926	-	129	170080040	ybaZ	ECDH10B_0410	-	methyltransferase
378	 49.44	0	415227..415580	+	117	170080041	ybaA	ECDH10B_0412	-	hypothetical protein
379	 48.03	0	415622..417172	-	516	170080042	ylaB	ECDH10B_0413	-	inner membrane protein
380	 47.13	0	417336..417806	-	156	170080043	ylaC	ECDH10B_0414	-	inner membrane protein
381	 48.37	0	417922..418473	-	183	170080044	maa	ECDH10B_0415	-	maltose O-acetyltransferase
382	 39.73	-2	418645..418863	-	72	170080045	hha	ECDH10B_0416	-	haemolysin expression modulating protein
383	 40.53	-2	418889..419263	-	124	170080046	ybaJ	ECDH10B_0417	-	hypothetical protein
384	 53.97	0	419809..422958	-	1049	170080047	acrB	ECDH10B_0418	-	multidrug efflux system protein
385	 53.85	0	422981..424174	-	397	170080048	acrA	ECDH10B_0419	-	multidrug efflux system
386	 45.37	-1	424316..424963	+	215	170080049	acrR	ECDH10B_0420	-	DNA-binding transcriptional repressor
387	 51.89	0	425091..428453	+	1120	170080050	kefA	ECDH10B_0421	-	fused protein; mechanosensitive channel protein
388	 48.15	0	428665..428826	-	53