IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
3361	 54.58	0	3755000..3756157	+	385	170083024	mdtE	ECDH10B_3689	-	multidrug resistance efflux transporter
3362	 53.02	0	3756182..3759295	+	1037	170083025	mdtF	ECDH10B_3690	-	multidrug transporter, RpoS-dependent
3363	 41.84	-1	3759658..3760386	-	242	170083026	gadW	ECDH10B_3691	-	DNA-binding transcriptional activator
3364	 40.97	-2	3760754..3761578	-	274	170083027	gadX	ECDH10B_3693	-	DNA-binding transcriptional dual regulator
3365	 53.96	0	3761948..3763348	-	466	170083028	gadA	ECDH10B_3694	-	glutamate decarboxylase A, PLP-dependent
3366	 48.43	0	3763559..3764956	-	465	170083029	yhjA	ECDH10B_3695	-	cytochrome C peroxidase
3367	 53.94	0	3765360..3767009	+	549	170083030	treF	ECDH10B_3696	-	cytoplasmic trehalase
3368	 47.76	0	3767060..3767662	-	200	170083031	yhjB	ECDH10B_3697	-	DNA-binding response regulator in two-component regulatory system
3369	 52.06	0	3768110..3769081	+	323	170083032	yhjC	ECDH10B_3698	-	DNA-binding transcriptional regulator
3370	 52.66	0	3769130..3770143	+	337	170083033	yhjD	ECDH10B_3699	-	inner membrane protein
3371	 55.63	0	3770554..3771876	+	440	170083034	yhjE	ECDH10B_3700	-	transporter
3372	 53.23	0	3772058..3774133	-	691	170083035	yhjG	ECDH10B_3701	-	outer membrane biogenesis protein
3373	 52.73	0	3774188..3774955	-	255	170083036	yhjH	ECDH10B_3702	-	EAL domain-containing flagellar function protein
3374	 57.10	+1	3775187..3776116	+	309	170083037	kdgK	ECDH10B_3703	-	ketodeoxygluconokinase
3375	 53.44	0	3776212..3777708	-	498	170083038	yhjJ	ECDH10B_3704	-	zinc-dependent peptidase
3376	 52.62	0	3779398..3781347	-	649	170083039	yhjK	ECDH10B_3706	-	diguanylate cyclase
3377	 57.11	+1	3781468..3784941	-	1157	170083040	bcsC	ECDH10B_3707	-	cellulose synthase subunit
3378	 54.74	0	3784923..3786029	-	368	170083041	bcsZ	ECDH10B_3708	-	endo-1,4-D-glucanase
3379	 54.91	0	3786036..3788375	-	779	170083042	bcsB	ECDH10B_3709	-	regulator of cellulose synthase, cyclic di-GMP binding
3380	 55.36	0	3788386..3791004	-	872	170083043	bcsA	ECDH10B_3710	-	cellulose synthase, catalytic subunit
3381	 46.03	-1	3791765..3791953	-	62	170083044	yhjR	ECDH10B_3712	-	hypothetical protein
3382	 48.44	0	3793794..3793985	+	63	170083045	bcsF	ECDH10B_3714	-	hypothetical protein
3383	 52.68	0	3793982..3795661	+	559	170083046	bcsG	ECDH10B_3715	-	inner membrane protein
3384	 52.78	0	3795748..3795855	-	35	170083047	ldrD	ECDH10B_3716	-	toxic polypeptide, small
3385	 45.44	-1	3796331..3797602	+	423	170083048	yhjV	ECDH10B_3718	-	transporter
3386	 56.12	+1	3797632..3798636	-	334	170083049	dppF	ECDH10B_3719	-	peptide ABC transporter ATP-binding protein
3387	 56.71	+1	3798633..3799616	-	327	170083050	dppD	ECDH10B_3720	-	peptide ABC transporter ATP-binding protein
3388	 59.03	+1	3799627..3800529	-	300	170083051	dppC	ECDH10B_3721	-	peptide ABC transporter membrane protein
3389	 56.47	+1	3800539..3801558	-	339	170083052	dppB	ECDH10B_3722	-	peptide ABC transporter membrane protein
3390	 51.55	0	3801866..3803473	-	535	170083053	dppA	ECDH10B_3723	-	peptide ABC transporter periplasmic substrate-binding protein
3391	 50.41	0	3804384..3806075	-	563	170083054	eptB	ECDH10B_3725	-	metal dependent hydrolase
3392	 51.20	0	3806399..3807607	-	402	170083055	yhjX	ECDH10B_3726	-	transporter
3393	 50.21	0	3807836..3808534	-	232	170083056	yhjY	ECDH10B_3727	-	hypothetical protein
3394	 49.82	0	3808692..3809255	+	187	170083057	tag	ECDH10B_3728	-	3-methyl-adenine DNA glycosylase I, constitutive
3395	 52.15	0	3809252..3809692	+	146	170083058	yiaC	ECDH10B_3729	-	acyltransferase
3396	 54.30	0	3809661..3811940	-	759	170083059	bisC	ECDH10B_3730	-	biotin sulfoxide reductase
3397	 57.88	+1	3812147..3812806	+	219	170083060	yiaD	ECDH10B_3731	-	outer membrane lipoprotein
3398	 52.00	0	3812910..3813884	+	324	170083061	tiaE	ECDH10B_3732	-	2-keto-D-gluconate reductase (glyoxalate reductase) (2-ketoaldonate reductase)
3399	 50.49	0	3813934..3814644	-	236	170083062	yiaF	ECDH10B_3733	-	hypothetical protein
3400	 43.99	-1	3815078..3815368	+	96	170083063	yiaG	ECDH10B_3734	-	transcriptional regulator
3401	 48.36	0	3815649..3815861	+	70	170083064	cspA	ECDH10B_3735	-	major cold shock protein
3402	 35.29	-2	3816048..3816200	-	50	170083065	hokA	ECDH10B_3736	-	toxic polypeptide, small
3403	 46.17	-1	3816280..3816801	+	173	170083066	insJ	ECDH10B_3737	-	IS150 protein InsA
3404	 42.84	-1	3816798..3817649	+	283	170083067	insK	ECDH10B_3738	-	IS150 protein InsB
3405	 55.41	0	3817928..3819997	-	689	170083068	glyS	ECDH10B_3739	-	glycine tRNA synthetase, beta subunit
3406	 47.67	0	3821013..3821312	-	99	170083069	ysaB	ECDH10B_3741	-	hypothetical protein
3407	 46.79	0	3821487..3822482	+	331	170083070	yiaH	ECDH10B_3742	-	inner membrane protein
3408	 41.10	-2	3822524..3822961	-	145	170083071	yiaA	ECDH10B_3743	-	inner membrane protein
3409	 41.52	-2	3823007..3823348	-	113	170083072	yiaB	ECDH10B_3744	-	inner membrane protein
3410	 54.78	0	3823517..3824971	-	484	170083073	xylB	ECDH10B_3745	-	xylulokinase
3411	 50.87	0	3825043..3826365	-	440	170083074	xylA	ECDH10B_3746	-	D-xylose isomerase
3412	 44.01	-1	3826731..3827723	+	330	170083075	xylF	ECDH10B_3747	-	D-xylose ABC transporter periplasmic-binding protein
3413	 47.08	0	3827801..3829342	+	513	170083076	xylG	ECDH10B_3748	-	D-xylose ABC transporter ATP-binding protein
3414	 53.89	0	3829320..3830501	+	393	170083077	xylH	ECDH10B_3749	-	D-xylose ABC transporter membrane protein
3415	 48.77	0	3830579..3831757	+	392	170083078	xylR	ECDH10B_3750	-	DNA-binding transcriptional activator, xylose-binding
3416	 48.24	0	3831953..3832777	-	274	170083079	bax	ECDH10B_3751	-	hypothetical protein
3417	 52.83	0	3833097..3835127	+	676	170083080	malS	ECDH10B_3752	-	alpha-amylase
3418	 52.15	0	3835305..3836558	+	417	170083081	avtA	ECDH10B_3753	-	valine-pyruvate aminotransferase
3419	 53.59	0	3836709..3837182	-	157	170083082	ysaA	ECDH10B_3754	-	hydrogenase, 4Fe-4S ferredoxin-type component
3420	 52.18	0	3837284..3838132	-	282	170083083	yiaJ	ECDH10B_3755	-	DNA-binding transcriptional repressor
3421	 53.05	0	3838333..3839331	+	332	170083084	yiaK	ECDH10B_3756	-	2,3-diketo-L-gulonate dehydrogenase, NADH-dependent
3422	 45.30	-1	3839343..3839810	+	155	170083085	yiaL	ECDH10B_3757	-	hypothetical protein
3423	 44.09	-1	3839928..3840401	+	157	170083086	yiaM	ECDH10B_3758	-	transporter
3424	 50.86	0	3840404..3841681	+	425	170083087	yiaN	ECDH10B_3759	-	transporter
3425	 51.17	0	3841694..3842680	+	328	170083088	yiaO	ECDH10B_3760	-	transporter
3426	 57.45	+1	3842684..3844180	+	498	170083089	lyxK	ECDH10B_3761	-	L-xylulose kinase
3427	 59.43	+1	3844177..3844839	+	220	170083090	sgbH	ECDH10B_3762	-	3-keto-L-gulonate 6-phosphate decarboxylase
3428	 55.75	0	3844832..3845692	+	286	170083091	sgbU	ECDH10B_3763	-	L-xylulose 5-phosphate 3-epimerase
3429	 57.33	+1	3845686..3846381	+	231	170083092	sgbE	ECDH10B_3764	-	L-ribulose-5-phosphate 4-epimerase
3430	 48.72	0	3846728..3847468	-	246	170083093	yiaT	ECDH10B_3765	-	hypothetical protein
3431	 47.69	0	3847592..3848566	+	324	170083094	yiaU	ECDH10B_3766	-	DNA-binding transcriptional regulator
3432	 50.66	0	3848563..3849699	-	378	170083095	yiaV	ECDH10B_3767	-	membrane fusion protein (MFP) component of efflux pump, signal anchor
3433	 46.60	0	3849705..3850028	-	107	170083096	yiaW	ECDH10B_3768	-	inner membrane protein
3434	 54.78	0	3850573..3852111	-	512	170083097	aldB	ECDH10B_3769	-	aldehyde dehydrogenase B
3435	 50.52	0	3852276..3853427	-	383	170083098	yiaY	ECDH10B_3770	-	Fe-containing alcohol dehydrogenase
3436	 56.37	+1	3853617..3855461	-	614	170083099	selB	ECDH10B_3771	-	selenocysteinyl-tRNA-specific translation factor
3437	 52.71	0	3856947..3857555	-	202	170083100	yibF	ECDH10B_3773	-	glutathione S-transferase
3438	 33.69	-2	3861937..3862779	+	280	170083101	yibA	ECDH10B_3775	-	HEAT repeat-containing lyase
3439	 50.28	0	3862821..3863522	+	233	170083102	yibJ	ECDH10B_3776	-	Rhs-family protein
3440	 32.25	-2	3863777..3864238	+	153	170083103	yibG	ECDH10B_3777	-	hypothetical protein
3441	 52.68	0	3865843..3866979	-	378	170083104	yibH	ECDH10B_3778	-	hypothetical protein
3442	 51.52	0	3866982..3867344	-	120	170083105	yibI	ECDH10B_3779	-	inner membrane protein
3443	 53.87	0	3867881..3869794	+	637	170083106	mtlA	ECDH10B_3780	-	fused mannitol-specific PTS enzymes: IIA components; IIB components; IIC components
3444	 52.39	0	3870024..3871172	+	382	170083107	mtlD	ECDH10B_3781	-	mannitol-1-phosphate dehydrogenase, NAD(P)-binding
3445	 51.02	0	3871172..3871759	+	195	170083108	mtlR	ECDH10B_3782	-	DNA-binding repressor
3446	 49.05	0	3871771..3871980	-	69	170083109	yibT	ECDH10B_3783	-	hypothetical protein
3447	 50.96	0	3872265..3872627	+	120	170083110	yibL	ECDH10B_3784	-	hypothetical protein
3448	 55.13	0	3872999..3874654	+	551	170083111	lldP	ECDH10B_3785	-	L-lactate permease
3449	 54.05	0	3874654..3875430	+	258	170083112	lldR	ECDH10B_3786	-	DNA-binding transcriptional repressor
3450	 55.67	0	3875427..3876617	+	396	170083113	lldD	ECDH10B_3787	-	L-lactate dehydrogenase, FMN-linked
3451	 55.06	0	3876815..3877288	+	157	170083114	yibK	ECDH10B_3788	-	rRNA methylase
3452	 53.53	0	3877341..3878162	-	273	170083115	cysE	ECDH10B_3789	-	serine acetyltransferase
3453	 56.76	+1	3878242..3879261	-	339	170083116	gpsA	ECDH10B_3790	-	glycerol-3-phosphate dehydrogenase (NAD+)
3454	 50.85	0	3879261..3879728	-	155	170083117	secB	ECDH10B_3791	-	protein export chaperone
3455	 52.38	0	3879791..3880042	-	83