IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.13   STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2995	 42.17	-1	3361894..3362832	-	312	170082658	tdcA	ECDH10B_3292	-	DNA-binding transcriptional activator
2996	 28.77	-2	3363147..3363365	+	72	170082659	tdcR	ECDH10B_3293	-	DNA-binding transcriptional activator
2997	 35.56	-2	3363621..3364160	+	179	170082660	yhaB	ECDH10B_3294	-	hypothetical protein
2998	 31.82	-2	3364182..3365369	+	395	170082661	yhaC	ECDH10B_3295	-	hypothetical protein
2999	 53.87	0	3366392..3367618	-	408	170082662	garK	ECDH10B_3297	-	glycerate kinase I
3000	 52.86	0	3367634..3368524	-	296	170082663	garR	ECDH10B_3298	-	tartronate semialdehyde reductase
3001	 52.92	0	3368554..3369324	-	256	170082664	garL	ECDH10B_3299	-	alpha-dehydro-beta-deoxy-D-glucarate aldolase
3002	 51.31	0	3369340..3370674	-	444	170082665	garP	ECDH10B_3300	-	(D)-galactarate transporter
3003	 52.86	0	3371049..3372620	+	523	170082666	garD	ECDH10B_3301	-	(D)-galactarate dehydrogenase
3004	 47.62	0	3372769..3373104	+	111	170082667	sohA	ECDH10B_3302	-	regulator
3005	 43.87	-1	3373104..3373568	+	154	170082668	yhaV	ECDH10B_3303	-	hypothetical protein
3006	 52.22	0	3373623..3374432	-	269	170082669	agaR	ECDH10B_3304	-	DNA-binding transcriptional dual regulator
3007	 55.27	0	3374681..3375961	+	426	170082670	kbaZ	ECDH10B_3305	-	tagatose 6-phosphate aldolase 1, kbaZ subunit
3008	 50.63	0	3375984..3376457	+	157	170082671	agaV	ECDH10B_3306	-	N-acetylgalactosamine-specific enzyme IIB component of PTS
3009	 56.94	+1	3376889..3377392	+	167	170082672	agaA	ECDH10B_3308	-	hypothetical protein
3010	 56.62	+1	3377743..3378897	+	384	170082673	agaS	ECDH10B_3309	-	tagatose-6-phosphate ketose/aldose isomerase
3011	 52.03	0	3378910..3379770	+	286	170082674	kbaY	ECDH10B_3310	-	tagatose 6-phosphate aldolase 1, kbaY subunit
3012	 44.03	-1	3379937..3380413	+	158	170082675	agaB	ECDH10B_3311	-	N-acetylgalactosamine-specific enzyme IIB component of PTS
3013	 51.37	0	3380452..3381255	+	267	170082676	agaC	ECDH10B_3312	-	N-acetylgalactosamine-specific enzyme IIC component of PTS
3014	 49.37	0	3381245..3382036	+	263	170082677	agaD	ECDH10B_3313	-	N-acetylgalactosamine-specific enzyme IID component of PTS
3015	 50.26	0	3382037..3382792	+	251	170082678	agaI	ECDH10B_3314	-	galactosamine-6-phosphate isomerase
3016	 45.13	-1	3383193..3383777	+	194	170082679	yraH	ECDH10B_3315	-	fimbrial-like adhesin protein
3017	 44.25	-1	3383857..3384552	+	231	170082680	yraI	ECDH10B_3316	-	periplasmic pilin chaperone
3018	 47.60	0	3384581..3387097	+	838	170082681	yraJ	ECDH10B_3317	-	outer membrane protein
3019	 47.89	0	3387108..3388199	+	363	170082682	yraK	ECDH10B_3318	-	fimbrial-like adhesin protein
3020	 54.59	0	3388242..3389102	-	286	170082683	yraL	ECDH10B_3319	-	methyltransferase
3021	 54.05	0	3389167..3391203	+	678	170082684	yraM	ECDH10B_3320	-	hypothetical protein
3022	 54.55	0	3391161..3391556	+	131	170082685	yraN	ECDH10B_3321	-	hypothetical protein
3023	 50.25	0	3391576..3392166	+	196	170082686	diaA	ECDH10B_3322	-	DnaA initiator-associating factor
3024	 54.34	0	3392176..3392751	+	191	170082687	yraP	ECDH10B_3323	-	hypothetical protein
3025	 57.73	+1	3392865..3393905	-	346	170082688	yraQ	ECDH10B_3324	-	permease
3026	 54.87	0	3393978..3394613	-	211	170082689	yraR	ECDH10B_3325	-	nucleoside-diphosphate-sugar epimerase
3027	 50.29	0	3394741..3395259	+	172	170082690	yhbO	ECDH10B_3326	-	intracellular protease
3028	 53.83	0	3395239..3395682	-	147	170082691	yhbP	ECDH10B_3327	-	hypothetical protein
3029	 54.46	0	3395733..3396035	+	100	170082692	yhbQ	ECDH10B_3328	-	endonuclease
3030	 55.56	0	3396022..3396525	-	167	170082693	yhbS	ECDH10B_3329	-	acyltransferase
3031	 51.81	0	3396519..3397043	-	174	170082694	yhbT	ECDH10B_3330	-	lipid carrier protein
3032	 56.83	+1	3397252..3398247	+	331	170082695	yhbU	ECDH10B_3331	-	peptidase (collagenase-like)
3033	 55.97	+1	3398256..3399134	+	292	170082696	yhbV	ECDH10B_3332	-	protease
3034	 55.85	0	3399215..3400222	+	335	170082697	yhbW	ECDH10B_3333	-	hypothetical protein
3035	 53.09	0	3400340..3401584	-	414	170082698	mtr	ECDH10B_3334	-	tryptophan transporter of high affinity
3036	 55.56	0	3401738..3403627	-	629	170082699	deaD	ECDH10B_3335	-	ATP-dependent RNA helicase
3037	 48.25	0	3403807..3404691	-	294	170082700	nlpI	ECDH10B_3336	-	hypothetical protein
3038	 53.70	0	3404800..3407004	-	734	170082701	pnp	ECDH10B_3337	-	polynucleotide phosphorylase/polyadenylase
3039	 51.85	0	3407182..3407451	-	89	170082702	rpsO	ECDH10B_3339	-	30S ribosomal subunit protein S15
3040	 52.49	0	3407600..3408544	-	314	170082703	truB	ECDH10B_3340	-	tRNA U55 pseudouridine synthase
3041	 52.99	0	3408544..3408945	-	133	170082704	rbfA	ECDH10B_3341	-	30s ribosome binding factor
3042	 53.42	0	3409109..3411781	-	890	170082705	infB	ECDH10B_3342	-	fused protein chain initiation factor 2, IF2: membrane protein; protein
3043	 52.76	0	3411806..3413293	-	495	170082706	nusA	ECDH10B_3343	-	transcription termination/antitermination L factor
3044	 48.57	0	3413321..3413773	-	150	170082707	yhbC	ECDH10B_3344	-	hypothetical protein
3045	 52.60	0	3414404..3415747	+	447	170082708	argG	ECDH10B_3346	-	argininosuccinate synthetase
3046	 43.05	-1	3415755..3417380	-	541	170082709	yhbX	ECDH10B_3347	-	hydrolase, inner membrane
3047	 49.55	0	3417940..3418272	-	110	170082710	secG	ECDH10B_3349	-	preprotein translocase membrane subunit
3048	 54.41	0	3418500..3419837	-	445	170082711	glmM	ECDH10B_3350	-	phosphoglucosamine mutase
3049	 51.59	0	3419830..3420678	-	282	170082712	folP	ECDH10B_3351	-	7,8-dihydropteroate synthase
3050	 53.59	0	3420768..3422702	-	644	170082713	ftsH	ECDH10B_3352	-	subunit of integral membrane ATP-dependent zinc metallopeptidase
3051	 50.48	0	3422802..3423431	-	209	170082714	rrmJ	ECDH10B_3353	-	23S rRNA methyltransferase
3052	 48.64	0	3423557..3423850	+	97	170082715	yhbY	ECDH10B_3354	-	RNA-binding protein
3053	 48.43	0	3424006..3424482	-	158	170082716	greA	ECDH10B_3355	-	transcription elongation factor
3054	 53.14	0	3424730..3426163	+	477	170082717	dacB	ECDH10B_3356	-	D-alanyl-D-alanine carboxypeptidase
3055	 53.20	0	3426349..3427521	-	390	170082718	obgE	ECDH10B_3357	-	GTPase involved in cell partioning and DNA repair
3056	 53.00	0	3427537..3428502	-	321	170082719	yhbE	ECDH10B_3358	-	inner membrane protein
3057	 50.00	0	3428629..3428886	-	85	170082720	rpmA	ECDH10B_3359	-	50S ribosomal subunit protein L27
3058	 48.40	0	3428907..3429218	-	103	170082721	rplU	ECDH10B_3360	-	50S ribosomal subunit protein L21
3059	 52.67	0	3429477..3430448	+	323	170082722	ispB	ECDH10B_3361	-	octaprenyl diphosphate synthase
3060	 50.18	0	3430676..3430954	+	92	170082723	sfsB	ECDH10B_3362	-	DNA-binding transcriptional activator of maltose metabolism
3061	 50.59	0	3432316..3432570	-	84	170082724	yrbA	ECDH10B_3364	-	DNA-binding transcriptional regulator
3062	 53.40	0	3432730..3433023	-	97	170082725	yrbB	ECDH10B_3365	-	hypothetical protein
3063	 52.36	0	3433023..3433658	-	211	170082726	yrbC	ECDH10B_3366	-	organic solvent ABC transporter
3064	 49.82	0	3433677..3434228	-	183	170082727	yrbD	ECDH10B_3367	-	organic solvent ABC transporter
3065	 55.17	0	3434233..3435015	-	260	170082728	yrbE	ECDH10B_3368	-	toluene ABC transporter membrane protein
3066	 54.57	0	3435023..3435832	-	269	170082729	yrbF	ECDH10B_3369	-	toluene ABC transporter ATP-binding protein
3067	 52.04	0	3436042..3437019	+	325	170082730	yrbG	ECDH10B_3370	-	calcium/sodium:proton antiporter
3068	 51.87	0	3437033..3438019	+	328	170082731	kdsD	ECDH10B_3371	-	D-arabinose 5-phosphate isomerase
3069	 52.56	0	3438040..3438606	+	188	170082732	kdsC	ECDH10B_3372	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
3070	 46.35	-1	3438603..3439178	+	191	170082733	yrbK	ECDH10B_3373	-	hypothetical protein
3071	 49.64	0	3439147..3439704	+	185	170082734	yhbN	ECDH10B_3374	-	ABC transporter periplasmic-binding protein
3072	 54.41	0	3439711..3440436	+	241	170082735	yhbG	ECDH10B_3375	-	ABC transporter ATP-binding protein
3073	 52.86	0	3440484..3441917	+	477	170082736	rpoN	ECDH10B_3376	-	RNA polymerase, sigma 54 (sigma N) factor
3074	 44.79	-1	3441940..3442227	+	95	170082737	hpf	ECDH10B_3377	-	ribosomal hibernation promoting factor
3075	 52.24	0	3442345..3442836	+	163	170082738	ptsN	ECDH10B_3378	-	sugar-specific enzyme IIA component of PTS
3076	 52.16	0	3442882..3443736	+	284	170082739	yhbJ	ECDH10B_3379	-	nucleoside triphosphate hydrolase domain-containing protein
3077	 49.08	0	3443733..3444005	+	90	170082740	npr	ECDH10B_3380	-	phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr)
3078	 51.18	0	3444219..3444851	+	210	170082741	yrbL	ECDH10B_3381	-	hypothetical protein
3079	 51.99	0	3444848..3445576	-	242	170082742	mtgA	ECDH10B_3382	-	biosynthetic peptidoglycan transglycosylase
3080	 52.75	0	3445573..3446226	-	217	170082743	elbB	ECDH10B_3383	-	isoprenoid biosynthesis protein
3081	 50.62	0	3446456..3448792	-	778	170082744	arcB	ECDH10B_3385	-	hybrid sensory histidine kinase in two-component regulatory system with ArcA
3082	 56.02	+1	3448888..3449817	-	309	170082745	yhcC	ECDH10B_3386	-	Fe-S oxidoreductase
3083	 57.05	+1	3450399..3454952	+	1517	170082746	gltB	ECDH10B_3387	-	glutamate synthase, large subunit
3084	 56.17	+1	3454965..3456383	+	472	170082747	gltD	ECDH10B_3388	-	glutamate synthase, 4Fe-4S protein, small subunit
3085	 45.36	-1	3456943..3457707	+	254	170082748	gltF	ECDH10B_3389	-	periplasmic protein
3086	 41.63	-1	3457879..3458553	+	224	170082749	yhcA	ECDH10B_3390	-	periplasmic chaperone protein
3087	 45.51	-1	3458574..3460955	+	793	170082750	yhcD	ECDH10B_3391	-	outer membrane protein
3088	 54.67	0	3461469..3462485	-	338