IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
243	 52.55	0	272155..272565	-	136	170079906	yagP	ECDH10B_0270	-	transcriptional regulator
244	 59.98	+1	272544..273500	-	318	170079907	yagQ	ECDH10B_0271	-	hypothetical protein
245	 59.44	+1	273510..275708	-	732	170079908	yagR	ECDH10B_0272	-	oxidoreductase
246	 60.71	+2	275705..276661	-	318	170079909	yagS	ECDH10B_0273	-	oxidoreductase
247	 54.78	0	276658..277347	-	229	170079910	yagT	ECDH10B_0274	-	xanthine dehydrogenase, 2Fe-2S subunit
248	 45.20	-1	277765..278379	+	204	170079911	yagU	ECDH10B_0275	-	inner membrane protein
249	 50.30	0	278627..278956	-	109	170079912	ykgJ	ECDH10B_0276	-	ferredoxin
250	 53.02	0	279269..279979	-	236	170079913	yagV	ECDH10B_0277	-	hypothetical protein
251	 51.58	0	279948..281591	-	547	170079914	yagW	ECDH10B_0278	-	receptor
252	 55.27	0	281581..284106	-	841	170079915	yagX	ECDH10B_0279	-	aromatic compound dioxygenase
253	 54.86	0	284132..284800	-	222	170079916	matC	ECDH10B_0280	-	hypothetical protein
254	 52.89	0	284858..285445	-	195	170079917	matB	ECDH10B_0281	-	MAT fimbrillin
255	 39.09	-2	285520..286110	-	196	170079918	matA	ECDH10B_0282	-	regulator
256	 43.86	-1	286886..287113	+	75	170079919	ykgL	ECDH10B_0283	-	hypothetical protein
257	 41.84	-1	287148..287288	-	46	170079920	ykgO	ECDH10B_0284	-	rpmJ (L36) paralog
258	 45.83	-1	287288..287551	-	87	170079921	ykgM	ECDH10B_0285	-	rpmE (L31) paralog
259	 48.31	0	289131..290018	+	295	170079922	eaeH	ECDH10B_0286	-	attaching and effacing protein, pathogenesis factor
260	 50.16	0	290056..290364	+	102	170079923	insE-1	ECDH10B_0287	-	IS3 element protein InsE
261	 55.13	0	290361..291227	+	288	170079924	insF-1	ECDH10B_0288	-	IS3 element protein InsF
262	 43.09	-1	291224..291910	-	228	170079925	ykgA	ECDH10B_0289	-	DNA-binding transcriptional regulator
263	 44.95	-1	292500..293093	-	197	170079926	ykgB	ECDH10B_0290	-	inner membrane protein
264	 35.44	-2	293105..293341	-	78	170079927	ykgI	ECDH10B_0291	-	hypothetical protein
265	 45.55	-1	293450..294775	-	441	170079928	ykgC	ECDH10B_0292	-	oxidoreductase
266	 51.23	0	295001..295855	+	284	170079929	ykgD	ECDH10B_0293	-	DNA-binding transcriptional regulator
267	 50.56	0	296382..297101	+	239	170079930	ykgE	ECDH10B_0294	-	oxidoreductase
268	 50.21	0	297112..298539	+	475	170079931	ykgF	ECDH10B_0295	-	amino acid dehydrogenase
269	 52.16	0	298532..299227	+	231	170079932	ykgG	ECDH10B_0296	-	transporter
270	 36.92	-2	299470..300138	-	222	170079933	ykgH	ECDH10B_0297	-	inner membrane protein
271	 57.09	+1	300351..302021	-	556	170079934	betA	ECDH10B_0298	-	choline dehydrogenase, a flavoprotein
272	 58.25	+1	302035..303507	-	490	170079935	betB	ECDH10B_0299	-	betaine aldehyde dehydrogenase, NAD-dependent
273	 56.80	+1	303521..304108	-	195	170079936	betI	ECDH10B_0300	-	DNA-binding transcriptional repressor
274	 55.31	0	304237..306270	+	677	170079937	betT	ECDH10B_0301	-	choline transporter of high affinity
275	 45.91	-1	307145..308233	+	362	170079938	yahA	ECDH10B_0302	-	DNA-binding transcriptional regulator
276	 49.30	0	308275..309207	-	310	170079939	yahB	ECDH10B_0303	-	DNA-bindng transcriptional regulator
277	 52.81	0	309299..309796	-	165	170079940	yahC	ECDH10B_0304	-	inner membrane protein
278	 45.38	-1	310054..310659	+	201	170079941	yahD	ECDH10B_0305	-	transcription regulator
279	 47.11	0	310699..311562	+	287	170079942	yahE	ECDH10B_0306	-	hypothetical protein
280	 55.56	0	311552..313099	+	515	170079943	yahF	ECDH10B_0307	-	acyl-CoA synthetase
281	 57.43	+1	314014..315225	+	403	170079944	mhpT	ECDH10B_0308	-	3-hydroxyphenylpropionic transporter
282	 48.15	0	315327..315866	+	179	170079945	yaiL	ECDH10B_0309	-	nucleoprotein/polynucleotide-associated enzyme
283	 48.56	0	316090..316923	-	277	170079946	frmB	ECDH10B_0310	-	esterase
284	 53.69	0	317017..318126	-	369	170079947	frmA	ECDH10B_0311	-	alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase
285	 53.26	0	318161..318436	-	91	170079948	frmR	ECDH10B_0312	-	regulator protein that represses frmRAB operon
286	 50.13	0	318624..319397	-	257	170079949	yaiO	ECDH10B_0313	-	hypothetical protein
287	 50.85	0	319861..320271	+	136	170079950	insC-1	ECDH10B_0316	-	IS2 insertion element repressor InsA
288	 55.08	0	320229..321134	+	301	170079951	insD-1	ECDH10B_0317	-	IS2 insertion element transposase InsAB'
289	 49.96	0	321294..322490	-	398	170079952	yaiP	ECDH10B_0319	-	glucosyltransferase
290	 43.37	-1	322614..323171	-	185	170079953	yaiS	ECDH10B_0320	-	hypothetical protein
291	 56.28	+1	323787..324749	+	320	170079954	tauA	ECDH10B_0321	-	taurine ABC transporter periplasmic substrate-binding protein
292	 55.99	+1	324762..325529	+	255	170079955	tauB	ECDH10B_0322	-	taurine ABC transporter ATP-binding protein
293	 57.25	+1	325526..326353	+	275	170079956	tauC	ECDH10B_0323	-	taurine ABC transporter membrane protein
294	 54.46	0	326350..327201	+	283	170079957	tauD	ECDH10B_0324	-	taurine dioxygenase, 2-oxoglutarate-dependent
295	 53.95	0	327308..328282	-	324	170079958	hemB	ECDH10B_0325	-	porphobilinogen synthase
296	 30.37	-2	328452..328721	-	89	170079959	ykiB	ECDH10B_0326	-	hypothetical protein
297	 55.13	0	330294..331160	-	288	170079960	insF-2	ECDH10B_0329	-	IS3 element protein InsF
298	 50.16	0	331157..331465	-	102	170079961	insE-2	ECDH10B_0330	-	IS3 element protein InsE
299	 40.36	-2	333016..333684	+	222	170079962	yaiV	ECDH10B_0332	-	DNA-binding transcriptional regulator
300	 55.35	0	333685..334842	-	385	170079963	ampH	ECDH10B_0333	-	beta-lactamase/D-alanine carboxypeptidase
301	 51.35	0	335194..336414	+	406	170079964	sbmA	ECDH10B_0334	-	transporter
302	 53.42	0	336427..337521	+	364	170079965	yaiW	ECDH10B_0335	-	DNA-binding transcriptional regulator
303	 52.43	0	337580..337888	-	102	170079966	yaiY	ECDH10B_0336	-	inner membrane protein
304	 48.83	0	338148..338360	+	70	170079967	yaiZ	ECDH10B_0337	-	inner membrane protein
305	 51.05	0	338384..339478	-	364	170079968	ddlA	ECDH10B_0338	-	D-alanine-D-alanine ligase A
306	 46.36	-1	339941..340201	+	86	170079969	iraP	ECDH10B_0339	-	anti-adaptor protein
307	 53.39	0	340302..341717	+	471	170079970	phoA	ECDH10B_0340	-	alkaline phosphatase
308	 47.66	0	341836..342156	+	106	170079971	psiF	ECDH10B_0341	-	hypothetical protein
309	 53.67	0	342258..343373	+	371	170079972	adrA	ECDH10B_0342	-	diguanylate cyclase
310	 54.57	0	343390..344199	-	269	170079973	proC	ECDH10B_0343	-	pyrroline-5-carboxylate reductase, NAD(P)-binding
311	 56.43	+1	344319..344777	+	152	170079974	yaiI	ECDH10B_0344	-	hypothetical protein
312	 52.19	0	344960..345484	+	174	170079975	aroL	ECDH10B_0345	-	shikimate kinase II
313	 48.44	0	345534..345725	+	63	170079976	yaiA	ECDH10B_0346	-	hypothetical protein
314	 46.46	0	345983..346660	+	225	170079977	aroM	ECDH10B_0347	-	hypothetical protein
315	 51.93	0	346732..347016	+	94	170079978	yaiE	ECDH10B_0348	-	hypothetical protein
316	 48.58	0	347224..347505	+	93	170079979	ykiA	ECDH10B_0349	-	hypothetical protein
317	 51.54	0	347663..348574	-	303	170079980	rdgC	ECDH10B_0350	-	DNA-binding protein, non-specific
318	 55.67	0	348699..349607	+	302	170079981	mak	ECDH10B_0351	-	manno(fructo)kinase
319	 50.72	0	349852..351036	-	394	170079982	araJ	ECDH10B_0352	-	transporter
320	 53.80	0	351162..354308	-	1048	170079983	sbcC	ECDH10B_0353	-	exonuclease, dsDNA, ATP-dependent
321	 53.28	0	354305..355507	-	400	170079984	sbcD	ECDH10B_0354	-	exonuclease, dsDNA, ATP-dependent
322	 54.49	0	355697..356386	+	229	170079985	phoB	ECDH10B_0355	-	DNA-binding response regulator in two-component regulatory system with PhoR (or CreC)
323	 53.01	0	356444..357739	+	431	170079986	phoR	ECDH10B_0356	-	sensory histidine kinase in two-component regulatory system with PhoB
324	 55.61	0	358146..359465	+	439	170079987	brnQ	ECDH10B_0357	-	branched chain amino acid ABC transporter
325	 52.91	0	359541..360914	+	457	170079988	proY	ECDH10B_0358	-	cryptic proline transporter
326	 54.57	0	361070..362887	+	605	170079989	malZ	ECDH10B_0359	-	maltodextrin glucosidase
327	 53.09	0	362892..363473	-	193	170079990	acpH	ECDH10B_0360	-	ACP phosphodiesterase
328	 54.15	0	363566..364636	+	356	170079991	queA	ECDH10B_0361	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
329	 51.33	0	364692..365819	+	375	170079992	tgt	ECDH10B_0362	-	tRNA-guanine transglycosylase
330	 49.55	0	365842..366174	+	110	170079993	yajC	ECDH10B_0363	-	SecYEG protein translocase auxillary subunit
331	 53.19	0	366202..368049	+	615	170079994	secD	ECDH10B_0364	-	SecYEG protein translocase auxillary subunit
332	 51.65	0	368060..369031	+	323	170079995	secF	ECDH10B_0365	-	SecYEG protein translocase auxillary subunit
333	 47.13	0	369160..369507	+	115	170079996	yajD	ECDH10B_0366	-	hypothetical protein
334	 50.51	0	369684..370568	-	294	170079997	tsx	ECDH10B_0367	-	nucleoside channel, receptor of phage T6 and colicin K
335	 47.59	0	370867..371406	-	179	170079998	yajI	ECDH10B_0368	-	lipoprotein
336	 51.33	0	371557..372006	+	149	170079999	nrdR	ECDH10B_0369	-	DNA-binding transcriptional regulator
337	 55.34	0	372010..373113	+	367	170080000	ribD	ECDH10B_0370	-	fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and 5-amino-6-(5-phosphoribosylamino) uracil reductase
338	 52.23	0	373202..373672	+	156