version 1.0
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137 4126 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 231 66.77 +2 256529..258496 + 655 170079894 yagF ECDH10B_0256 - CP4-6 prophage; dehydratase 232 62.47 +2 258723..260105 + 460 170079895 yagG ECDH10B_0257 - CP4-6 prophage; sugar transporter 233 64.37 +2 260117..261727 + 536 170079896 yagH ECDH10B_0258 - CP4-6 prophage; xylosidase/arabinosidase 234 58.81 +1 264075..265079 - 334 170079897 argF ECDH10B_0261 - CP4-6 prophage; ornithine carbamoyltransferase 2, chain F 235 55.16 0 265423..265926 - 167 170079898 insB-3 ECDH10B_0262 - CP4-6 prophage; IS1 transposase InsAB' 236 53.26 0 265845..266120 - 91 170079899 insA-3 ECDH10B_0263 - CP4-6 prophage; IS1 repressor protein InsA 237 48.91 0 266274..267005 + 243 170079900 yagJ ECDH10B_0264 - CP4-6 prophage; hypothetical protein 238 44.82 -1 267096..267722 - 208 170079901 yagK ECDH10B_0265 - CP4-6 prophage; hypothetical protein 239 37.34 -2 267994..268692 - 232 170079902 yagL ECDH10B_0266 - CP4-6 prophage; DNA-binding protein 240 36.26 -2 268719..269573 - 284 170079903 yagM ECDH10B_0267 - CP4-6 prophage; hypothetical protein 241 43.54 -1 269913..270353 - 146 170079904 yagN ECDH10B_0268 - CP4-6 prophage; hypothetical protein 242 44.33 -1 270470..271870 - 466 170079905 intF ECDH10B_0269 - CP4-6 prophage; phage integrase 243 52.55 0 272155..272565 - 136 170079906 yagP ECDH10B_0270 - transcriptional regulator 244 59.98 +1 272544..273500 - 318 170079907 yagQ ECDH10B_0271 - hypothetical protein 245 59.44 +1 273510..275708 - 732 170079908 yagR ECDH10B_0272 - oxidoreductase 246 60.71 +2 275705..276661 - 318 170079909 yagS ECDH10B_0273 - oxidoreductase 247 54.78 0 276658..277347 - 229 170079910 yagT ECDH10B_0274 - xanthine dehydrogenase, 2Fe-2S subunit 248 45.20 -1 277765..278379 + 204 170079911 yagU ECDH10B_0275 - inner membrane protein 249 50.30 0 278627..278956 - 109 170079912 ykgJ ECDH10B_0276 - ferredoxin 250 53.02 0 279269..279979 - 236 170079913 yagV ECDH10B_0277 - hypothetical protein 251 51.58 0 279948..281591 - 547 170079914 yagW ECDH10B_0278 - receptor 252 55.27 0 281581..284106 - 841 170079915 yagX ECDH10B_0279 - aromatic compound dioxygenase 253 54.86 0 284132..284800 - 222 170079916 matC ECDH10B_0280 - hypothetical protein 254 52.89 0 284858..285445 - 195 170079917 matB ECDH10B_0281 - MAT fimbrillin 255 39.09 -2 285520..286110 - 196 170079918 matA ECDH10B_0282 - regulator 256 43.86 -1 286886..287113 + 75 170079919 ykgL ECDH10B_0283 - hypothetical protein 257 41.84 -1 287148..287288 - 46 170079920 ykgO ECDH10B_0284 - rpmJ (L36) paralog 258 45.83 -1 287288..287551 - 87 170079921 ykgM ECDH10B_0285 - rpmE (L31) paralog 259 48.31 0 289131..290018 + 295 170079922 eaeH ECDH10B_0286 - attaching and effacing protein, pathogenesis factor 260 50.16 0 290056..290364 + 102 170079923 insE-1 ECDH10B_0287 - IS3 element protein InsE 261 55.13 0 290361..291227 + 288 170079924 insF-1 ECDH10B_0288 - IS3 element protein InsF 262 43.09 -1 291224..291910 - 228 170079925 ykgA ECDH10B_0289 - DNA-binding transcriptional regulator 263 44.95 -1 292500..293093 - 197 170079926 ykgB ECDH10B_0290 - inner membrane protein 264 35.44 -2 293105..293341 - 78 170079927 ykgI ECDH10B_0291 - hypothetical protein 265 45.55 -1 293450..294775 - 441 170079928 ykgC ECDH10B_0292 - oxidoreductase 266 51.23 0 295001..295855 + 284 170079929 ykgD ECDH10B_0293 - DNA-binding transcriptional regulator 267 50.56 0 296382..297101 + 239 170079930 ykgE ECDH10B_0294 - oxidoreductase 268 50.21 0 297112..298539 + 475 170079931 ykgF ECDH10B_0295 - amino acid dehydrogenase 269 52.16 0 298532..299227 + 231 170079932 ykgG ECDH10B_0296 - transporter 270 36.92 -2 299470..300138 - 222 170079933 ykgH ECDH10B_0297 - inner membrane protein 271 57.09 +1 300351..302021 - 556 170079934 betA ECDH10B_0298 - choline dehydrogenase, a flavoprotein 272 58.25 +1 302035..303507 - 490 170079935 betB ECDH10B_0299 - betaine aldehyde dehydrogenase, NAD-dependent 273 56.80 +1 303521..304108 - 195 170079936 betI ECDH10B_0300 - DNA-binding transcriptional repressor 274 55.31 0 304237..306270 + 677 170079937 betT ECDH10B_0301 - choline transporter of high affinity 275 45.91 -1 307145..308233 + 362 170079938 yahA ECDH10B_0302 - DNA-binding transcriptional regulator 276 49.30 0 308275..309207 - 310 170079939 yahB ECDH10B_0303 - DNA-bindng transcriptional regulator 277 52.81 0 309299..309796 - 165 170079940 yahC ECDH10B_0304 - inner membrane protein 278 45.38 -1 310054..310659 + 201 170079941 yahD ECDH10B_0305 - transcription regulator 279 47.11 0 310699..311562 + 287 170079942 yahE ECDH10B_0306 - hypothetical protein 280 55.56 0 311552..313099 + 515 170079943 yahF ECDH10B_0307 - acyl-CoA synthetase 281 57.43 +1 314014..315225 + 403 170079944 mhpT ECDH10B_0308 - 3-hydroxyphenylpropionic transporter 282 48.15 0 315327..315866 + 179 170079945 yaiL ECDH10B_0309 - nucleoprotein/polynucleotide-associated enzyme 283 48.56 0 316090..316923 - 277 170079946 frmB ECDH10B_0310 - esterase 284 53.69 0 317017..318126 - 369 170079947 frmA ECDH10B_0311 - alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase 285 53.26 0 318161..318436 - 91 170079948 frmR ECDH10B_0312 - regulator protein that represses frmRAB operon 286 50.13 0 318624..319397 - 257 170079949 yaiO ECDH10B_0313 - hypothetical protein 287 50.85 0 319861..320271 + 136 170079950 insC-1 ECDH10B_0316 - IS2 insertion element repressor InsA 288 55.08 0 320229..321134 + 301 170079951 insD-1 ECDH10B_0317 - IS2 insertion element transposase InsAB' 289 49.96 0 321294..322490 - 398 170079952 yaiP ECDH10B_0319 - glucosyltransferase 290 43.37 -1 322614..323171 - 185 170079953 yaiS ECDH10B_0320 - hypothetical protein 291 56.28 +1 323787..324749 + 320 170079954 tauA ECDH10B_0321 - taurine ABC transporter periplasmic substrate-binding protein 292 55.99 +1 324762..325529 + 255 170079955 tauB ECDH10B_0322 - taurine ABC transporter ATP-binding protein 293 57.25 +1 325526..326353 + 275 170079956 tauC ECDH10B_0323 - taurine ABC transporter membrane protein 294 54.46 0 326350..327201 + 283 170079957 tauD ECDH10B_0324 - taurine dioxygenase, 2-oxoglutarate-dependent 295 53.95 0 327308..328282 - 324 170079958 hemB ECDH10B_0325 - porphobilinogen synthase 296 30.37 -2 328452..328721 - 89 170079959 ykiB ECDH10B_0326 - hypothetical protein 297 55.13 0 330294..331160 - 288 170079960 insF-2 ECDH10B_0329 - IS3 element protein InsF 298 50.16 0 331157..331465 - 102 170079961 insE-2 ECDH10B_0330 - IS3 element protein InsE 299 40.36 -2 333016..333684 + 222 170079962 yaiV ECDH10B_0332 - DNA-binding transcriptional regulator 300 55.35 0 333685..334842 - 385 170079963 ampH ECDH10B_0333 - beta-lactamase/D-alanine carboxypeptidase 301 51.35 0 335194..336414 + 406 170079964 sbmA ECDH10B_0334 - transporter 302 53.42 0 336427..337521 + 364 170079965 yaiW ECDH10B_0335 - DNA-binding transcriptional regulator 303 52.43 0 337580..337888 - 102 170079966 yaiY ECDH10B_0336 - inner membrane protein 304 48.83 0 338148..338360 + 70 170079967 yaiZ ECDH10B_0337 - inner membrane protein 305 51.05 0 338384..339478 - 364 170079968 ddlA ECDH10B_0338 - D-alanine-D-alanine ligase A 306 46.36 -1 339941..340201 + 86 170079969 iraP ECDH10B_0339 - anti-adaptor protein 307 53.39 0 340302..341717 + 471 170079970 phoA ECDH10B_0340 - alkaline phosphatase 308 47.66 0 341836..342156 + 106 170079971 psiF ECDH10B_0341 - hypothetical protein 309 53.67 0 342258..343373 + 371 170079972 adrA ECDH10B_0342 - diguanylate cyclase 310 54.57 0 343390..344199 - 269 170079973 proC ECDH10B_0343 - pyrroline-5-carboxylate reductase, NAD(P)-binding 311 56.43 +1 344319..344777 + 152 170079974 yaiI ECDH10B_0344 - hypothetical protein 312 52.19 0 344960..345484 + 174 170079975 aroL ECDH10B_0345 - shikimate kinase II 313 48.44 0 345534..345725 + 63 170079976 yaiA ECDH10B_0346 - hypothetical protein 314 46.46 0 345983..346660 + 225 170079977 aroM ECDH10B_0347 - hypothetical protein 315 51.93 0 346732..347016 + 94 170079978 yaiE ECDH10B_0348 - hypothetical protein 316 48.58 0 347224..347505 + 93 170079979 ykiA ECDH10B_0349 - hypothetical protein 317 51.54 0 347663..348574 - 303 170079980 rdgC ECDH10B_0350 - DNA-binding protein, non-specific 318 55.67 0 348699..349607 + 302 170079981 mak ECDH10B_0351 - manno(fructo)kinase 319 50.72 0 349852..351036 - 394 170079982 araJ ECDH10B_0352 - transporter 320 53.80 0 351162..354308 - 1048 170079983 sbcC ECDH10B_0353 - exonuclease, dsDNA, ATP-dependent 321 53.28 0 354305..355507 - 400 170079984 sbcD ECDH10B_0354 - exonuclease, dsDNA, ATP-dependent 322 54.49 0 355697..356386 + 229 170079985 phoB ECDH10B_0355 - DNA-binding response regulator in two-component regulatory system with PhoR (or CreC) 323 53.01 0 356444..357739 + 431 170079986 phoR ECDH10B_0356 - sensory histidine kinase in two-component regulatory system with PhoB 324 55.61 0 358146..359465 + 439 170079987 brnQ ECDH10B_0357 - branched chain amino acid ABC transporter 325 52.91 0 359541..360914 + 457 170079988 proY ECDH10B_0358 - cryptic proline transporter 326 54.57 0 361070..362887 + 605 170079989 malZ ECDH10B_0359 - maltodextrin glucosidase 327 53.09 0 362892..363473 - 193 170079990 acpH ECDH10B_0360 - ACP phosphodiesterase 328 54.15 0 363566..364636 + 356 170079991 queA ECDH10B_0361 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 329 51.33 0 364692..365819 + 375 170079992 tgt ECDH10B_0362 - tRNA-guanine transglycosylase 330 49.55 0 365842..366174 + 110 170079993 yajC ECDH10B_0363 - SecYEG protein translocase auxillary subunit 51.13 MEAN 4.76 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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