IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
213	 50.68	0	239438..239881	-	147	170079876	yafY	ECDH10B_0234	-	CP4-6 prophage; inner membrane lipoprotein
214	 57.79	+1	240512..241333	-	273	170079877	yafZ	ECDH10B_0237	-	CP4-6 prophage; hypothetical protein
215	 56.83	+1	241425..242288	-	287	170079878	ykfA	ECDH10B_0238	-	CP4-6 prophage; GTP-binding protein
216	 47.99	0	242617..243510	-	297	170079879	perR	ECDH10B_0239	-	CP4-6 prophage; DNA-binding transcriptional regulator
217	 43.70	-1	243570..243974	+	134	170079880	insN-1	ECDH10B_0240	-	CP4-6 prophage; partial regulator of insertion element IS911A
218	 45.83	-1	243931..245082	+	383	170079881	insI-1	ECDH10B_0241	-	CP4-6 prophage; IS30 transposase
219	 55.63	0	245158..245583	+	141	170079882	insO-1	ECDH10B_0243	-	CP4-6 prophage; partial transposase of insertion element IS911A
220	 54.67	0	247429..248445	-	338	170079883	insH-1	ECDH10B_0245	-	CP4-6 prophage; IS5 transposase and trans-activator
221	 54.84	0	248653..250056	+	467	170079884	mmuP	ECDH10B_0246	-	CP4-6 prophage; S-methylmethionine transporter
222	 60.34	+1	250043..250975	+	310	170079885	mmuM	ECDH10B_0247	-	CP4-6 prophage; S-methylmethionine:homocysteine methyltransferase
223	 56.35	+1	251084..252130	-	348	170079886	afuC	ECDH10B_0248	-	CP4-6 prophage; ferric ABC transporter ATP-binding protein
224	 55.92	+1	252142..252504	-	120	170079887	afuB	ECDH10B_0249	-	CP4-6 prophage; ferric ABC transporter membrane protein
225	 55.16	0	252506..253009	-	167	170079888	insB-2	ECDH10B_0250	-	CP4-6 prophage; IS1 transposase InsAB'
226	 53.26	0	252928..253203	-	91	170079889	insA-2	ECDH10B_0251	-	CP4-6 prophage; IS1 repressor protein InsA
227	 45.13	-1	253352..253690	-	112	170079890	ykgN	ECDH10B_0252	-	IS protein
228	 51.00	0	253713..254063	-	116	170079891	yagB	ECDH10B_0253	-	CP4-6 prophage; hypothetical protein
229	 62.08	+2	254157..255311	-	384	170079892	yagA	ECDH10B_0254	-	CP4-6 prophage; DNA-binding transcriptional regulator
230	 61.18	+2	255585..256514	+	309	170079893	yagE	ECDH10B_0255	-	CP4-6 prophage; lyase/synthase
231	 66.77	+2	256529..258496	+	655	170079894	yagF	ECDH10B_0256	-	CP4-6 prophage; dehydratase
232	 62.47	+2	258723..260105	+	460	170079895	yagG	ECDH10B_0257	-	CP4-6 prophage; sugar transporter
233	 64.37	+2	260117..261727	+	536	170079896	yagH	ECDH10B_0258	-	CP4-6 prophage; xylosidase/arabinosidase
234	 58.81	+1	264075..265079	-	334	170079897	argF	ECDH10B_0261	-	CP4-6 prophage; ornithine carbamoyltransferase 2, chain F
235	 55.16	0	265423..265926	-	167	170079898	insB-3	ECDH10B_0262	-	CP4-6 prophage; IS1 transposase InsAB'
236	 53.26	0	265845..266120	-	91	170079899	insA-3	ECDH10B_0263	-	CP4-6 prophage; IS1 repressor protein InsA
237	 48.91	0	266274..267005	+	243	170079900	yagJ	ECDH10B_0264	-	CP4-6 prophage; hypothetical protein
238	 44.82	-1	267096..267722	-	208	170079901	yagK	ECDH10B_0265	-	CP4-6 prophage; hypothetical protein
239	 37.34	-2	267994..268692	-	232	170079902	yagL	ECDH10B_0266	-	CP4-6 prophage; DNA-binding protein
240	 36.26	-2	268719..269573	-	284	170079903	yagM	ECDH10B_0267	-	CP4-6 prophage; hypothetical protein
241	 43.54	-1	269913..270353	-	146	170079904	yagN	ECDH10B_0268	-	CP4-6 prophage; hypothetical protein
242	 44.33	-1	270470..271870	-	466	170079905	intF	ECDH10B_0269	-	CP4-6 prophage; phage integrase
243	 52.55	0	272155..272565	-	136	170079906	yagP	ECDH10B_0270	-	transcriptional regulator
244	 59.98	+1	272544..273500	-	318	170079907	yagQ	ECDH10B_0271	-	hypothetical protein
245	 59.44	+1	273510..275708	-	732	170079908	yagR	ECDH10B_0272	-	oxidoreductase
246	 60.71	+2	275705..276661	-	318	170079909	yagS	ECDH10B_0273	-	oxidoreductase
247	 54.78	0	276658..277347	-	229	170079910	yagT	ECDH10B_0274	-	xanthine dehydrogenase, 2Fe-2S subunit
248	 45.20	-1	277765..278379	+	204	170079911	yagU	ECDH10B_0275	-	inner membrane protein
249	 50.30	0	278627..278956	-	109	170079912	ykgJ	ECDH10B_0276	-	ferredoxin
250	 53.02	0	279269..279979	-	236	170079913	yagV	ECDH10B_0277	-	hypothetical protein
251	 51.58	0	279948..281591	-	547	170079914	yagW	ECDH10B_0278	-	receptor
252	 55.27	0	281581..284106	-	841	170079915	yagX	ECDH10B_0279	-	aromatic compound dioxygenase
253	 54.86	0	284132..284800	-	222	170079916	matC	ECDH10B_0280	-	hypothetical protein
254	 52.89	0	284858..285445	-	195	170079917	matB	ECDH10B_0281	-	MAT fimbrillin
255	 39.09	-2	285520..286110	-	196	170079918	matA	ECDH10B_0282	-	regulator
256	 43.86	-1	286886..287113	+	75	170079919	ykgL	ECDH10B_0283	-	hypothetical protein
257	 41.84	-1	287148..287288	-	46	170079920	ykgO	ECDH10B_0284	-	rpmJ (L36) paralog
258	 45.83	-1	287288..287551	-	87	170079921	ykgM	ECDH10B_0285	-	rpmE (L31) paralog
259	 48.31	0	289131..290018	+	295	170079922	eaeH	ECDH10B_0286	-	attaching and effacing protein, pathogenesis factor
260	 50.16	0	290056..290364	+	102	170079923	insE-1	ECDH10B_0287	-	IS3 element protein InsE
261	 55.13	0	290361..291227	+	288	170079924	insF-1	ECDH10B_0288	-	IS3 element protein InsF
262	 43.09	-1	291224..291910	-	228	170079925	ykgA	ECDH10B_0289	-	DNA-binding transcriptional regulator
263	 44.95	-1	292500..293093	-	197	170079926	ykgB	ECDH10B_0290	-	inner membrane protein
264	 35.44	-2	293105..293341	-	78	170079927	ykgI	ECDH10B_0291	-	hypothetical protein
265	 45.55	-1	293450..294775	-	441	170079928	ykgC	ECDH10B_0292	-	oxidoreductase
266	 51.23	0	295001..295855	+	284	170079929	ykgD	ECDH10B_0293	-	DNA-binding transcriptional regulator
267	 50.56	0	296382..297101	+	239	170079930	ykgE	ECDH10B_0294	-	oxidoreductase
268	 50.21	0	297112..298539	+	475	170079931	ykgF	ECDH10B_0295	-	amino acid dehydrogenase
269	 52.16	0	298532..299227	+	231	170079932	ykgG	ECDH10B_0296	-	transporter
270	 36.92	-2	299470..300138	-	222	170079933	ykgH	ECDH10B_0297	-	inner membrane protein
271	 57.09	+1	300351..302021	-	556	170079934	betA	ECDH10B_0298	-	choline dehydrogenase, a flavoprotein
272	 58.25	+1	302035..303507	-	490	170079935	betB	ECDH10B_0299	-	betaine aldehyde dehydrogenase, NAD-dependent
273	 56.80	+1	303521..304108	-	195	170079936	betI	ECDH10B_0300	-	DNA-binding transcriptional repressor
274	 55.31	0	304237..306270	+	677	170079937	betT	ECDH10B_0301	-	choline transporter of high affinity
275	 45.91	-1	307145..308233	+	362	170079938	yahA	ECDH10B_0302	-	DNA-binding transcriptional regulator
276	 49.30	0	308275..309207	-	310	170079939	yahB	ECDH10B_0303	-	DNA-bindng transcriptional regulator
277	 52.81	0	309299..309796	-	165	170079940	yahC	ECDH10B_0304	-	inner membrane protein
278	 45.38	-1	310054..310659	+	201	170079941	yahD	ECDH10B_0305	-	transcription regulator
279	 47.11	0	310699..311562	+	287	170079942	yahE	ECDH10B_0306	-	hypothetical protein
280	 55.56	0	311552..313099	+	515	170079943	yahF	ECDH10B_0307	-	acyl-CoA synthetase
281	 57.43	+1	314014..315225	+	403	170079944	mhpT	ECDH10B_0308	-	3-hydroxyphenylpropionic transporter
282	 48.15	0	315327..315866	+	179	170079945	yaiL	ECDH10B_0309	-	nucleoprotein/polynucleotide-associated enzyme
283	 48.56	0	316090..316923	-	277	170079946	frmB	ECDH10B_0310	-	esterase
284	 53.69	0	317017..318126	-	369	170079947	frmA	ECDH10B_0311	-	alcohol dehydrogenase class III/glutathione-dependent formaldehyde dehydrogenase
285	 53.26	0	318161..318436	-	91	170079948	frmR	ECDH10B_0312	-	regulator protein that represses frmRAB operon
286	 50.13	0	318624..319397	-	257	170079949	yaiO	ECDH10B_0313	-	hypothetical protein
287	 50.85	0	319861..320271	+	136	170079950	insC-1	ECDH10B_0316	-	IS2 insertion element repressor InsA
288	 55.08	0	320229..321134	+	301	170079951	insD-1	ECDH10B_0317	-	IS2 insertion element transposase InsAB'
289	 49.96	0	321294..322490	-	398	170079952	yaiP	ECDH10B_0319	-	glucosyltransferase
290	 43.37	-1	322614..323171	-	185	170079953	yaiS	ECDH10B_0320	-	hypothetical protein
291	 56.28	+1	323787..324749	+	320	170079954	tauA	ECDH10B_0321	-	taurine ABC transporter periplasmic substrate-binding protein
292	 55.99	+1	324762..325529	+	255	170079955	tauB	ECDH10B_0322	-	taurine ABC transporter ATP-binding protein
293	 57.25	+1	325526..326353	+	275	170079956	tauC	ECDH10B_0323	-	taurine ABC transporter membrane protein
294	 54.46	0	326350..327201	+	283	170079957	tauD	ECDH10B_0324	-	taurine dioxygenase, 2-oxoglutarate-dependent
295	 53.95	0	327308..328282	-	324	170079958	hemB	ECDH10B_0325	-	porphobilinogen synthase
296	 30.37	-2	328452..328721	-	89	170079959	ykiB	ECDH10B_0326	-	hypothetical protein
297	 55.13	0	330294..331160	-	288	170079960	insF-2	ECDH10B_0329	-	IS3 element protein InsF
298	 50.16	0	331157..331465	-	102	170079961	insE-2	ECDH10B_0330	-	IS3 element protein InsE
299	 40.36	-2	333016..333684	+	222	170079962	yaiV	ECDH10B_0332	-	DNA-binding transcriptional regulator
300	 55.35	0	333685..334842	-	385	170079963	ampH	ECDH10B_0333	-	beta-lactamase/D-alanine carboxypeptidase
301	 51.35	0	335194..336414	+	406	170079964	sbmA	ECDH10B_0334	-	transporter
302	 53.42	0	336427..337521	+	364	170079965	yaiW	ECDH10B_0335	-	DNA-binding transcriptional regulator
303	 52.43	0	337580..337888	-	102	170079966	yaiY	ECDH10B_0336	-	inner membrane protein
304	 48.83	0	338148..338360	+	70	170079967	yaiZ	ECDH10B_0337	-	inner membrane protein
305	 51.05	0	338384..339478	-	364	170079968	ddlA	ECDH10B_0338	-	D-alanine-D-alanine ligase A
306	 46.36	-1	339941..340201	+	86	170079969	iraP	ECDH10B_0339	-	anti-adaptor protein
307	 53.39	0	340302..341717	+	471	170079970	phoA	ECDH10B_0340