version 1.0
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137 4126 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2545 48.33 0 2832170..2833396 + 408 170082208 yfiN ECDH10B_2771 - diguanylate cyclase 2546 51.14 0 2833412..2833894 + 160 170082209 yfiB ECDH10B_2772 - outer membrane lipoprotein 2547 48.28 0 2833970..2834317 - 115 170082210 rplS ECDH10B_2773 - 50S ribosomal subunit protein L19 2548 53.39 0 2834359..2835126 - 255 170082211 trmD ECDH10B_2774 - tRNA (guanine-1-)-methyltransferase 2549 49.00 0 2835157..2835705 - 182 170082212 rimM ECDH10B_2775 - 16S rRNA processing protein 2550 51.41 0 2835724..2835972 - 82 170082213 rpsP ECDH10B_2776 - 30S ribosomal subunit protein S16 2551 54.19 0 2836221..2837582 - 453 170082214 ffh ECDH10B_2777 - Signal recognition particle (SRP) component with 4.5S RNA (ffs) 2552 51.13 0 2838561..2839847 + 428 170082215 yfjD ECDH10B_2779 - inner membrane protein 2553 50.34 0 2839902..2840495 - 197 170082216 grpE ECDH10B_2780 - heat shock protein 2554 49.94 0 2840618..2841496 + 292 170082217 yfjB ECDH10B_2781 - NAD kinase 2555 51.81 0 2841582..2843243 + 553 170082218 recN ECDH10B_2782 - recombination and repair protein 2556 49.42 0 2843392..2843733 + 113 170082219 smpA ECDH10B_2783 - small membrane lipoprotein 2557 50.86 0 2843795..2844085 - 96 170082220 yfjF ECDH10B_2784 - hypothetical protein 2558 47.17 0 2844075..2844551 - 158 170082221 yfjG ECDH10B_2785 - hypothetical protein 2559 51.76 0 2844683..2845165 + 160 170082222 smpB ECDH10B_2786 - trans-translation protein 2560 36.78 -2 2847431..2848387 - 318 170082223 yfjH ECDH10B_2789 - CP4-57 prophage; hypothetical protein 2561 46.95 0 2848431..2848643 + 70 170082224 alpA ECDH10B_2790 - CP4-57 prophage; DNA-binding transcriptional activator 2562 37.94 -2 2848772..2850181 + 469 170082225 yfjI ECDH10B_2791 - CP4-57 prophage; hypothetical protein 2563 40.35 -2 2850334..2850960 + 208 170082226 yfjJ ECDH10B_2792 - CP4-57 prophage; hypothetical protein 2564 48.90 0 2851138..2853327 - 729 170082227 yfjK ECDH10B_2793 - CP4-57 prophage; protein 2565 48.67 0 2853324..2854940 - 538 170082228 yfjL ECDH10B_2794 - CP4-57 prophage; hypothetical protein 2566 45.45 -1 2855300..2855563 - 87 170082229 yfjM ECDH10B_2795 - CP4-57 prophage; hypothetical protein 2567 44.32 -1 2855705..2856778 + 357 170082230 yfjN ECDH10B_2796 - CP4-57 prophage; RNase LS 2568 45.97 -1 2856771..2857142 + 123 170082231 yfjO ECDH10B_2797 - CP4-57 prophage; hypothetical protein 2569 54.05 0 2857497..2858360 + 287 170082232 yfjP ECDH10B_2798 - CP4-57 prophage; GTP-binding protein 2570 55.60 0 2858452..2859273 + 273 170082233 yfjQ ECDH10B_2799 - CP4-57 prophage; hypothetical protein 2571 57.26 +1 2859490..2860191 + 233 170082234 yfjR ECDH10B_2800 - CP4-57 prophage; DNA-binding transcriptional regulator 2572 53.16 0 2860232..2860468 + 78 170082235 ypjK ECDH10B_2801 - CP4-57 prophage; inner membrane protein 2573 50.90 0 2860468..2860911 + 147 170082236 yfjS ECDH10B_2802 - CP4-57 prophage; hypothetical protein 2574 51.28 0 2860935..2861402 + 155 170082237 yfjT ECDH10B_2803 - CP4-57 prophage; hypothetical protein 2575 41.59 -2 2861627..2861941 - 104 170082238 yfjU ECDH10B_2804 - CP4-57 prophage; protein 2576 53.76 0 2861954..2862472 - 172 170082239 ypjL ECDH10B_2805 - CP4-57 prophage; inner membrane protein 2577 51.74 0 2862623..2862823 - 66 170082240 yfjV ECDH10B_2806 - CP4-57 prophage; hypothetical protein 2578 31.22 -2 2863105..2864808 + 567 170082241 yfjW ECDH10B_2809 - CP4-57 prophage; inner membrane protein 2579 54.03 0 2865706..2866164 + 152 170082242 yfjX ECDH10B_2810 - CP4-57 prophage; antirestriction protein 2580 54.24 0 2866173..2866655 + 160 170082243 yfjY ECDH10B_2811 - CP4-57 prophage; DNA repair protein 2581 54.73 0 2866664..2866864 + 66 170082244 ypjJ ECDH10B_2812 - hypothetical protein 2582 54.40 0 2866902..2867219 + 105 170082245 yfjZ ECDH10B_2813 - CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system 2583 47.58 0 2867240..2867569 + 109 170082246 ypjF ECDH10B_2814 - CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system 2584 54.29 0 2878772..2879749 + 325 170082247 ygaT ECDH10B_2826 - hypothetical protein 2585 57.68 +1 2879769..2881037 + 422 170082248 ygaF ECDH10B_2827 - hypothetical protein 2586 59.33 +1 2882522..2883802 + 426 170082249 gabT ECDH10B_2829 - 4-aminobutyrate aminotransferase, PLP-dependent 2587 51.32 0 2884040..2885440 + 466 170082250 gabP ECDH10B_2830 - gamma-aminobutyrate transporter 2588 53.54 0 2885461..2886123 + 220 170082251 csiR ECDH10B_2831 - DNA-binding transcriptional dual regulator 2589 48.44 0 2886124..2886573 - 149 170082252 ygaU ECDH10B_2832 - hypothetical protein 2590 50.94 0 2886657..2886815 - 52 170082253 yqaE ECDH10B_2833 - hypothetical protein 2591 53.00 0 2886998..2887297 + 99 170082254 ygaV ECDH10B_2834 - DNA-binding transcriptional regulator 2592 45.90 -1 2887307..2887831 + 174 170082255 ygaP ECDH10B_2835 - inner membrane protein with hydrolase activity 2593 48.15 0 2887878..2888282 - 134 170082256 stpA ECDH10B_2836 - DNA binding protein, nucleoid-associated 2594 49.11 0 2888951..2889400 + 149 170082257 ygaW ECDH10B_2837 - inner membrane protein 2595 46.96 0 2889437..2889781 - 114 170082258 ygaC ECDH10B_2838 - hypothetical protein 2596 53.25 0 2890510..2890755 + 81 170082259 nrdH ECDH10B_2840 - glutaredoxin-like protein 2597 55.96 +1 2890752..2891162 + 136 170082260 nrdI ECDH10B_2841 - NrdI 2598 51.84 0 2891135..2893279 + 714 170082261 nrdE ECDH10B_2842 - ribonucleoside-diphosphate reductase 2, alpha subunit 2599 48.23 0 2893289..2894248 + 319 170082262 nrdF ECDH10B_2843 - ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein 2600 58.12 +1 2896574..2897638 + 354 170082263 proW ECDH10B_2844 - glycine betaine ABC transporter membrane protein 2601 52.57 0 2897696..2898688 + 330 170082264 proX ECDH10B_2845 - glycine betaine ABC transporter periplasmic-binding protein 2602 52.85 0 2900181..2900918 + 245 170082265 ygaZ ECDH10B_2849 - transporter 2603 54.46 0 2900908..2901243 + 111 170082266 ygaH ECDH10B_2850 - inner membrane protein 2604 53.37 0 2901991..2903163 + 390 170082267 emrA ECDH10B_2852 - multidrug efflux system 2605 56.60 +1 2903180..2904718 + 512 170082268 emrB ECDH10B_2853 - multidrug efflux system protein 2606 51.55 0 2904782..2905297 - 171 170082269 luxS ECDH10B_2854 - S-ribosylhomocysteinase 2607 51.32 0 2905447..2907003 - 518 170082270 gshA ECDH10B_2856 - gamma-glutamate-cysteine ligase 2608 49.42 0 2907076..2907504 - 142 170082271 yqaA ECDH10B_2857 - inner membrane protein 2609 53.44 0 2907501..2908067 - 188 170082272 yqaB ECDH10B_2858 - fructose-1-P and 6-phosphogluconate phosphatase 2610 49.46 0 2909525..2909710 - 61 170082273 csrA ECDH10B_2864 - pleiotropic regulatory protein for carbon source metabolism 2611 53.63 0 2909945..2912575 - 876 170082274 alaS ECDH10B_2865 - alanyl-tRNA synthetase 2612 51.90 0 2912703..2913203 - 166 170082275 recX ECDH10B_2866 - inhibitor of RecA 2613 56.63 +1 2914413..2914910 - 165 170082276 ygaD ECDH10B_2868 - hypothetical protein 2614 55.16 0 2915055..2916140 - 361 170082277 mltB ECDH10B_2869 - membrane-bound lytic murein transglycosylase B 2615 50.18 0 2916396..2916959 + 187 170082278 srlA ECDH10B_2870 - glucitol/sorbitol-specific enzyme IIC component of PTS 2616 54.69 0 2916956..2917915 + 319 170082279 srlE ECDH10B_2871 - glucitol/sorbitol-specific enzyme IIB component of PTS 2617 55.11 0 2917926..2918297 + 123 170082280 srlB ECDH10B_2872 - glucitol/sorbitol-specific enzyme IIA component of PTS 2618 53.33 0 2918301..2919080 + 259 170082281 srlD ECDH10B_2873 - sorbitol-6-phosphate dehydrogenase 2619 55.00 0 2919185..2919544 + 119 170082282 gutM ECDH10B_2874 - DNA-binding transcriptional activator of glucitol operon 2620 48.84 0 2919611..2920384 + 257 170082283 srlR ECDH10B_2875 - DNA-bindng transcriptional repressor 2621 57.35 +1 2920377..2921342 + 321 170082284 gutQ ECDH10B_2876 - phosphosugar-binding protein 2622 56.83 +1 2921339..2922853 - 504 170082285 norR ECDH10B_2877 - DNA-binding transcriptional activator 2623 53.33 0 2923040..2924479 + 479 170082286 norV ECDH10B_2878 - flavorubredoxin oxidoreductase 2624 54.06 0 2924476..2925609 + 377 170082287 norW ECDH10B_2879 - NADH:flavorubredoxin oxidoreductase 2625 57.61 +1 2925737..2927989 - 750 170082288 hypF ECDH10B_2880 - carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases 2626 52.27 0 2928142..2928669 - 175 170082289 hydN ECDH10B_2881 - formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit 2627 53.16 0 2928818..2929831 - 337 170082290 ascG ECDH10B_2882 - DNA-binding transcriptional repressor 2628 56.10 +1 2930088..2931545 + 485 170082291 ascF ECDH10B_2883 - fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component; IIC component 2629 51.51 0 2931554..2932978 + 474 170082292 ascB ECDH10B_2884 - cryptic 6-phospho-beta-glucosidase 2630 53.93 0 2933137..2933607 - 156 170082293 hycI ECDH10B_2885 - protease involved in processing C-terminal end of HycE 2631 52.80 0 2933600..2934010 - 136 170082294 hycH ECDH10B_2886 - HycH 2632 56.38 +1 2934007..2934774 - 255 170082295 hycG ECDH10B_2887 - hydrogenase 3 and formate hydrogenase complex, HycG subunit 2633 55.62 0 2934774..2935316 - 180 170082296 hycF ECDH10B_2888 - formate hydrogenlyase complex iron-sulfur protein 2634 56.90 +1 2935326..2937035 - 569 170082297 hycE ECDH10B_2889 - hydrogenase 3, large subunit 2635 58.44 +1 2937053..2937976 - 307 170082298 hycD ECDH10B_2890 - hydrogenase 3, membrane subunit 2636 58.18 +1 2937979..2939805 - 608 170082299 hycC ECDH10B_2891 - hydrogenase 3, membrane subunit 2637 57.35 +1 2939802..2940413 - 203 170082300 hycB ECDH10B_2892 - hydrogenase 3, Fe-S subunit 2638 50.22 0 2940538..2940999 - 153 170082301 hycA ECDH10B_2893 - regulator of the transcriptional regulator FhlA 2639 52.99 0 2941211..2941561 + 116 170082302 hypA ECDH10B_2894 - HypA 2640 55.21 0 2941565..2942437 + 290 170082303 hypB ECDH10B_2895 - GTP hydrolase involved in nickel liganding into hydrogenases 2641 55.31 0 2942428..2942700 + 90 170082304 hypC ECDH10B_2896 - hypothetical protein 2642 55.44 0 2942700..2943821 + 373 170082305 hypD ECDH10B_2897 - hypothetical protein 2643 57.07 +1 2943860..2944828 + 322 170082306 hypE ECDH10B_2898 - carbamoyl phosphate phosphatase, hydrogenase 3 maturation protein 2644 52.57 0 2944902..2946980 + 692 170082307 fhlA ECDH10B_2899 - DNA-binding transcriptional activator 51.13 MEAN 4.76 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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