IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2543	 45.63	-1	2831147..2831512	+	121	170082206	yfiL	ECDH10B_2769	-	hypothetical protein
2544	 45.66	-1	2831662..2832180	+	172	170082207	yfiR	ECDH10B_2770	-	hypothetical protein
2545	 48.33	0	2832170..2833396	+	408	170082208	yfiN	ECDH10B_2771	-	diguanylate cyclase
2546	 51.14	0	2833412..2833894	+	160	170082209	yfiB	ECDH10B_2772	-	outer membrane lipoprotein
2547	 48.28	0	2833970..2834317	-	115	170082210	rplS	ECDH10B_2773	-	50S ribosomal subunit protein L19
2548	 53.39	0	2834359..2835126	-	255	170082211	trmD	ECDH10B_2774	-	tRNA (guanine-1-)-methyltransferase
2549	 49.00	0	2835157..2835705	-	182	170082212	rimM	ECDH10B_2775	-	16S rRNA processing protein
2550	 51.41	0	2835724..2835972	-	82	170082213	rpsP	ECDH10B_2776	-	30S ribosomal subunit protein S16
2551	 54.19	0	2836221..2837582	-	453	170082214	ffh	ECDH10B_2777	-	Signal recognition particle (SRP) component with 4.5S RNA (ffs)
2552	 51.13	0	2838561..2839847	+	428	170082215	yfjD	ECDH10B_2779	-	inner membrane protein
2553	 50.34	0	2839902..2840495	-	197	170082216	grpE	ECDH10B_2780	-	heat shock protein
2554	 49.94	0	2840618..2841496	+	292	170082217	yfjB	ECDH10B_2781	-	NAD kinase
2555	 51.81	0	2841582..2843243	+	553	170082218	recN	ECDH10B_2782	-	recombination and repair protein
2556	 49.42	0	2843392..2843733	+	113	170082219	smpA	ECDH10B_2783	-	small membrane lipoprotein
2557	 50.86	0	2843795..2844085	-	96	170082220	yfjF	ECDH10B_2784	-	hypothetical protein
2558	 47.17	0	2844075..2844551	-	158	170082221	yfjG	ECDH10B_2785	-	hypothetical protein
2559	 51.76	0	2844683..2845165	+	160	170082222	smpB	ECDH10B_2786	-	trans-translation protein
2560	 36.78	-2	2847431..2848387	-	318	170082223	yfjH	ECDH10B_2789	-	CP4-57 prophage; hypothetical protein
2561	 46.95	0	2848431..2848643	+	70	170082224	alpA	ECDH10B_2790	-	CP4-57 prophage; DNA-binding transcriptional activator
2562	 37.94	-2	2848772..2850181	+	469	170082225	yfjI	ECDH10B_2791	-	CP4-57 prophage; hypothetical protein
2563	 40.35	-2	2850334..2850960	+	208	170082226	yfjJ	ECDH10B_2792	-	CP4-57 prophage; hypothetical protein
2564	 48.90	0	2851138..2853327	-	729	170082227	yfjK	ECDH10B_2793	-	CP4-57 prophage; protein
2565	 48.67	0	2853324..2854940	-	538	170082228	yfjL	ECDH10B_2794	-	CP4-57 prophage; hypothetical protein
2566	 45.45	-1	2855300..2855563	-	87	170082229	yfjM	ECDH10B_2795	-	CP4-57 prophage; hypothetical protein
2567	 44.32	-1	2855705..2856778	+	357	170082230	yfjN	ECDH10B_2796	-	CP4-57 prophage; RNase LS
2568	 45.97	-1	2856771..2857142	+	123	170082231	yfjO	ECDH10B_2797	-	CP4-57 prophage; hypothetical protein
2569	 54.05	0	2857497..2858360	+	287	170082232	yfjP	ECDH10B_2798	-	CP4-57 prophage; GTP-binding protein
2570	 55.60	0	2858452..2859273	+	273	170082233	yfjQ	ECDH10B_2799	-	CP4-57 prophage; hypothetical protein
2571	 57.26	+1	2859490..2860191	+	233	170082234	yfjR	ECDH10B_2800	-	CP4-57 prophage; DNA-binding transcriptional regulator
2572	 53.16	0	2860232..2860468	+	78	170082235	ypjK	ECDH10B_2801	-	CP4-57 prophage; inner membrane protein
2573	 50.90	0	2860468..2860911	+	147	170082236	yfjS	ECDH10B_2802	-	CP4-57 prophage; hypothetical protein
2574	 51.28	0	2860935..2861402	+	155	170082237	yfjT	ECDH10B_2803	-	CP4-57 prophage; hypothetical protein
2575	 41.59	-2	2861627..2861941	-	104	170082238	yfjU	ECDH10B_2804	-	CP4-57 prophage; protein
2576	 53.76	0	2861954..2862472	-	172	170082239	ypjL	ECDH10B_2805	-	CP4-57 prophage; inner membrane protein
2577	 51.74	0	2862623..2862823	-	66	170082240	yfjV	ECDH10B_2806	-	CP4-57 prophage; hypothetical protein
2578	 31.22	-2	2863105..2864808	+	567	170082241	yfjW	ECDH10B_2809	-	CP4-57 prophage; inner membrane protein
2579	 54.03	0	2865706..2866164	+	152	170082242	yfjX	ECDH10B_2810	-	CP4-57 prophage; antirestriction protein
2580	 54.24	0	2866173..2866655	+	160	170082243	yfjY	ECDH10B_2811	-	CP4-57 prophage; DNA repair protein
2581	 54.73	0	2866664..2866864	+	66	170082244	ypjJ	ECDH10B_2812	-	hypothetical protein
2582	 54.40	0	2866902..2867219	+	105	170082245	yfjZ	ECDH10B_2813	-	CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system
2583	 47.58	0	2867240..2867569	+	109	170082246	ypjF	ECDH10B_2814	-	CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system
2584	 54.29	0	2878772..2879749	+	325	170082247	ygaT	ECDH10B_2826	-	hypothetical protein
2585	 57.68	+1	2879769..2881037	+	422	170082248	ygaF	ECDH10B_2827	-	hypothetical protein
2586	 59.33	+1	2882522..2883802	+	426	170082249	gabT	ECDH10B_2829	-	4-aminobutyrate aminotransferase, PLP-dependent
2587	 51.32	0	2884040..2885440	+	466	170082250	gabP	ECDH10B_2830	-	gamma-aminobutyrate transporter
2588	 53.54	0	2885461..2886123	+	220	170082251	csiR	ECDH10B_2831	-	DNA-binding transcriptional dual regulator
2589	 48.44	0	2886124..2886573	-	149	170082252	ygaU	ECDH10B_2832	-	hypothetical protein
2590	 50.94	0	2886657..2886815	-	52	170082253	yqaE	ECDH10B_2833	-	hypothetical protein
2591	 53.00	0	2886998..2887297	+	99	170082254	ygaV	ECDH10B_2834	-	DNA-binding transcriptional regulator
2592	 45.90	-1	2887307..2887831	+	174	170082255	ygaP	ECDH10B_2835	-	inner membrane protein with hydrolase activity
2593	 48.15	0	2887878..2888282	-	134	170082256	stpA	ECDH10B_2836	-	DNA binding protein, nucleoid-associated
2594	 49.11	0	2888951..2889400	+	149	170082257	ygaW	ECDH10B_2837	-	inner membrane protein
2595	 46.96	0	2889437..2889781	-	114	170082258	ygaC	ECDH10B_2838	-	hypothetical protein
2596	 53.25	0	2890510..2890755	+	81	170082259	nrdH	ECDH10B_2840	-	glutaredoxin-like protein
2597	 55.96	+1	2890752..2891162	+	136	170082260	nrdI	ECDH10B_2841	-	NrdI
2598	 51.84	0	2891135..2893279	+	714	170082261	nrdE	ECDH10B_2842	-	ribonucleoside-diphosphate reductase 2, alpha subunit
2599	 48.23	0	2893289..2894248	+	319	170082262	nrdF	ECDH10B_2843	-	ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein
2600	 58.12	+1	2896574..2897638	+	354	170082263	proW	ECDH10B_2844	-	glycine betaine ABC transporter membrane protein
2601	 52.57	0	2897696..2898688	+	330	170082264	proX	ECDH10B_2845	-	glycine betaine ABC transporter periplasmic-binding protein
2602	 52.85	0	2900181..2900918	+	245	170082265	ygaZ	ECDH10B_2849	-	transporter
2603	 54.46	0	2900908..2901243	+	111	170082266	ygaH	ECDH10B_2850	-	inner membrane protein
2604	 53.37	0	2901991..2903163	+	390	170082267	emrA	ECDH10B_2852	-	multidrug efflux system
2605	 56.60	+1	2903180..2904718	+	512	170082268	emrB	ECDH10B_2853	-	multidrug efflux system protein
2606	 51.55	0	2904782..2905297	-	171	170082269	luxS	ECDH10B_2854	-	S-ribosylhomocysteinase
2607	 51.32	0	2905447..2907003	-	518	170082270	gshA	ECDH10B_2856	-	gamma-glutamate-cysteine ligase
2608	 49.42	0	2907076..2907504	-	142	170082271	yqaA	ECDH10B_2857	-	inner membrane protein
2609	 53.44	0	2907501..2908067	-	188	170082272	yqaB	ECDH10B_2858	-	fructose-1-P and 6-phosphogluconate phosphatase
2610	 49.46	0	2909525..2909710	-	61	170082273	csrA	ECDH10B_2864	-	pleiotropic regulatory protein for carbon source metabolism
2611	 53.63	0	2909945..2912575	-	876	170082274	alaS	ECDH10B_2865	-	alanyl-tRNA synthetase
2612	 51.90	0	2912703..2913203	-	166	170082275	recX	ECDH10B_2866	-	inhibitor of RecA
2613	 56.63	+1	2914413..2914910	-	165	170082276	ygaD	ECDH10B_2868	-	hypothetical protein
2614	 55.16	0	2915055..2916140	-	361	170082277	mltB	ECDH10B_2869	-	membrane-bound lytic murein transglycosylase B
2615	 50.18	0	2916396..2916959	+	187	170082278	srlA	ECDH10B_2870	-	glucitol/sorbitol-specific enzyme IIC component of PTS
2616	 54.69	0	2916956..2917915	+	319	170082279	srlE	ECDH10B_2871	-	glucitol/sorbitol-specific enzyme IIB component of PTS
2617	 55.11	0	2917926..2918297	+	123	170082280	srlB	ECDH10B_2872	-	glucitol/sorbitol-specific enzyme IIA component of PTS
2618	 53.33	0	2918301..2919080	+	259	170082281	srlD	ECDH10B_2873	-	sorbitol-6-phosphate dehydrogenase
2619	 55.00	0	2919185..2919544	+	119	170082282	gutM	ECDH10B_2874	-	DNA-binding transcriptional activator of glucitol operon
2620	 48.84	0	2919611..2920384	+	257	170082283	srlR	ECDH10B_2875	-	DNA-bindng transcriptional repressor
2621	 57.35	+1	2920377..2921342	+	321	170082284	gutQ	ECDH10B_2876	-	phosphosugar-binding protein
2622	 56.83	+1	2921339..2922853	-	504	170082285	norR	ECDH10B_2877	-	DNA-binding transcriptional activator
2623	 53.33	0	2923040..2924479	+	479	170082286	norV	ECDH10B_2878	-	flavorubredoxin oxidoreductase
2624	 54.06	0	2924476..2925609	+	377	170082287	norW	ECDH10B_2879	-	NADH:flavorubredoxin oxidoreductase
2625	 57.61	+1	2925737..2927989	-	750	170082288	hypF	ECDH10B_2880	-	carbamoyl phosphate phosphatase and maturation protein for [NiFe] hydrogenases
2626	 52.27	0	2928142..2928669	-	175	170082289	hydN	ECDH10B_2881	-	formate dehydrogenase-H, [4Fe-4S] ferredoxin subunit
2627	 53.16	0	2928818..2929831	-	337	170082290	ascG	ECDH10B_2882	-	DNA-binding transcriptional repressor
2628	 56.10	+1	2930088..2931545	+	485	170082291	ascF	ECDH10B_2883	-	fused cellobiose/arbutin/salicin-specific PTS enzymes: IIB component; IIC component
2629	 51.51	0	2931554..2932978	+	474	170082292	ascB	ECDH10B_2884	-	cryptic 6-phospho-beta-glucosidase
2630	 53.93	0	2933137..2933607	-	156	170082293	hycI	ECDH10B_2885	-	protease involved in processing C-terminal end of HycE
2631	 52.80	0	2933600..2934010	-	136	170082294	hycH	ECDH10B_2886	-	HycH
2632	 56.38	+1	2934007..2934774	-	255	170082295	hycG	ECDH10B_2887	-	hydrogenase 3 and formate hydrogenase complex, HycG subunit
2633	 55.62	0	2934774..2935316	-	180	170082296	hycF	ECDH10B_2888	-	formate hydrogenlyase complex iron-sulfur protein
2634	 56.90	+1	2935326..2937035	-	569	170082297	hycE	ECDH10B_2889	-	hydrogenase 3, large subunit
2635	 58.44	+1	2937053..2937976	-	307	170082298	hycD	ECDH10B_2890	-	hydrogenase 3, membrane subunit
2636	 58.18	+1	2937979..2939805	-	608	170082299	hycC	ECDH10B_2891	-	hydrogenase 3, membrane subunit
2637	 57.35	+1	2939802..2940413	-	203	170082300	hycB	ECDH10B_2892	-	hydrogenase 3, Fe-S subunit
2638	 50.22	0	2940538..2940999	-	153	170082301	hycA	ECDH10B_2893	-	regulator of the transcriptional regulator FhlA
2639	 52.99	0	2941211..2941561	+	116	170082302	hypA	ECDH10B_2894	-	HypA
2640	 55.21	0	2941565..2942437	+	290	170082303	hypB	ECDH10B_2895	-	GTP hydrolase involved in nickel liganding into hydrogenases
2641	 55.31	0	2942428..2942700	+	90	170082304	hypC	ECDH10B_2896	-	hypothetical protein
2642	 55.44	0	2942700..2943821	+	373	170082305	hypD	ECDH10B_2897	-	hypothetical protein
51.13	MEAN

4.76	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.