IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2526	 52.17	0	2806541..2807230	+	229	170082189	ung	ECDH10B_2748	-	uracil-DNA-glycosylase
2527	 56.26	+1	2807278..2808315	-	345	170082190	yfiF	ECDH10B_2749	-	methyltransferase
2528	 49.52	0	2808522..2808941	+	139	170082191	trxC	ECDH10B_2750	-	thioredoxin 2
2529	 52.36	0	2809010..2809708	+	232	170082192	yfiP	ECDH10B_2751	-	hypothetical protein
2530	 54.30	0	2809740..2812400	+	886	170082193	yfiQ	ECDH10B_2752	-	fused acyl-CoA synthetase: NAD(P)-binding subunit; ATP-binding subunit
2531	 48.89	0	2812514..2813869	+	451	170082194	pssA	ECDH10B_2753	-	phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase)
2532	 56.41	+1	2813966..2814238	+	90	170082195	yfiM	ECDH10B_2754	-	hypothetical protein
2533	 48.73	0	2814235..2815533	-	432	170082196	kgtP	ECDH10B_2755	-	alpha-ketoglutarate transporter
2534	 51.44	0	2821387..2823960	-	857	170082197	clpB	ECDH10B_2760	-	protein disaggregation chaperone
2535	 54.78	0	2824090..2824821	-	243	170082198	yfiH	ECDH10B_2761	-	hypothetical protein
2536	 52.80	0	2824818..2825798	-	326	170082199	rluD	ECDH10B_2762	-	23S rRNA pseudouridine synthase
2537	 51.22	0	2825933..2826670	+	245	170082200	yfiO	ECDH10B_2763	-	lipoprotein
2538	 46.20	-1	2826941..2827282	+	113	170082201	yfiA	ECDH10B_2764	-	cold shock protein associated with 30S ribosomal subunit
2539	 37.50	-2	2827386..2827433	+	15	170082202	pheL	ECDH10B_2765	-	pheA gene leader peptide
2540	 49.18	0	2827532..2828692	+	386	170082203	pheA	ECDH10B_2766	-	bifunctional chorismate mutase P and prephenate dehydratase
2541	 52.32	0	2828735..2829856	-	373	170082204	tyrA	ECDH10B_2767	-	bifunctional chorismate mutase T and prephenate dehydrogenase
2542	 51.82	0	2829867..2830937	-	356	170082205	aroF	ECDH10B_2768	-	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible
2543	 45.63	-1	2831147..2831512	+	121	170082206	yfiL	ECDH10B_2769	-	hypothetical protein
2544	 45.66	-1	2831662..2832180	+	172	170082207	yfiR	ECDH10B_2770	-	hypothetical protein
2545	 48.33	0	2832170..2833396	+	408	170082208	yfiN	ECDH10B_2771	-	diguanylate cyclase
2546	 51.14	0	2833412..2833894	+	160	170082209	yfiB	ECDH10B_2772	-	outer membrane lipoprotein
2547	 48.28	0	2833970..2834317	-	115	170082210	rplS	ECDH10B_2773	-	50S ribosomal subunit protein L19
2548	 53.39	0	2834359..2835126	-	255	170082211	trmD	ECDH10B_2774	-	tRNA (guanine-1-)-methyltransferase
2549	 49.00	0	2835157..2835705	-	182	170082212	rimM	ECDH10B_2775	-	16S rRNA processing protein
2550	 51.41	0	2835724..2835972	-	82	170082213	rpsP	ECDH10B_2776	-	30S ribosomal subunit protein S16
2551	 54.19	0	2836221..2837582	-	453	170082214	ffh	ECDH10B_2777	-	Signal recognition particle (SRP) component with 4.5S RNA (ffs)
2552	 51.13	0	2838561..2839847	+	428	170082215	yfjD	ECDH10B_2779	-	inner membrane protein
2553	 50.34	0	2839902..2840495	-	197	170082216	grpE	ECDH10B_2780	-	heat shock protein
2554	 49.94	0	2840618..2841496	+	292	170082217	yfjB	ECDH10B_2781	-	NAD kinase
2555	 51.81	0	2841582..2843243	+	553	170082218	recN	ECDH10B_2782	-	recombination and repair protein
2556	 49.42	0	2843392..2843733	+	113	170082219	smpA	ECDH10B_2783	-	small membrane lipoprotein
2557	 50.86	0	2843795..2844085	-	96	170082220	yfjF	ECDH10B_2784	-	hypothetical protein
2558	 47.17	0	2844075..2844551	-	158	170082221	yfjG	ECDH10B_2785	-	hypothetical protein
2559	 51.76	0	2844683..2845165	+	160	170082222	smpB	ECDH10B_2786	-	trans-translation protein
2560	 36.78	-2	2847431..2848387	-	318	170082223	yfjH	ECDH10B_2789	-	CP4-57 prophage; hypothetical protein
2561	 46.95	0	2848431..2848643	+	70	170082224	alpA	ECDH10B_2790	-	CP4-57 prophage; DNA-binding transcriptional activator
2562	 37.94	-2	2848772..2850181	+	469	170082225	yfjI	ECDH10B_2791	-	CP4-57 prophage; hypothetical protein
2563	 40.35	-2	2850334..2850960	+	208	170082226	yfjJ	ECDH10B_2792	-	CP4-57 prophage; hypothetical protein
2564	 48.90	0	2851138..2853327	-	729	170082227	yfjK	ECDH10B_2793	-	CP4-57 prophage; protein
2565	 48.67	0	2853324..2854940	-	538	170082228	yfjL	ECDH10B_2794	-	CP4-57 prophage; hypothetical protein
2566	 45.45	-1	2855300..2855563	-	87	170082229	yfjM	ECDH10B_2795	-	CP4-57 prophage; hypothetical protein
2567	 44.32	-1	2855705..2856778	+	357	170082230	yfjN	ECDH10B_2796	-	CP4-57 prophage; RNase LS
2568	 45.97	-1	2856771..2857142	+	123	170082231	yfjO	ECDH10B_2797	-	CP4-57 prophage; hypothetical protein
2569	 54.05	0	2857497..2858360	+	287	170082232	yfjP	ECDH10B_2798	-	CP4-57 prophage; GTP-binding protein
2570	 55.60	0	2858452..2859273	+	273	170082233	yfjQ	ECDH10B_2799	-	CP4-57 prophage; hypothetical protein
2571	 57.26	+1	2859490..2860191	+	233	170082234	yfjR	ECDH10B_2800	-	CP4-57 prophage; DNA-binding transcriptional regulator
2572	 53.16	0	2860232..2860468	+	78	170082235	ypjK	ECDH10B_2801	-	CP4-57 prophage; inner membrane protein
2573	 50.90	0	2860468..2860911	+	147	170082236	yfjS	ECDH10B_2802	-	CP4-57 prophage; hypothetical protein
2574	 51.28	0	2860935..2861402	+	155	170082237	yfjT	ECDH10B_2803	-	CP4-57 prophage; hypothetical protein
2575	 41.59	-2	2861627..2861941	-	104	170082238	yfjU	ECDH10B_2804	-	CP4-57 prophage; protein
2576	 53.76	0	2861954..2862472	-	172	170082239	ypjL	ECDH10B_2805	-	CP4-57 prophage; inner membrane protein
2577	 51.74	0	2862623..2862823	-	66	170082240	yfjV	ECDH10B_2806	-	CP4-57 prophage; hypothetical protein
2578	 31.22	-2	2863105..2864808	+	567	170082241	yfjW	ECDH10B_2809	-	CP4-57 prophage; inner membrane protein
2579	 54.03	0	2865706..2866164	+	152	170082242	yfjX	ECDH10B_2810	-	CP4-57 prophage; antirestriction protein
2580	 54.24	0	2866173..2866655	+	160	170082243	yfjY	ECDH10B_2811	-	CP4-57 prophage; DNA repair protein
2581	 54.73	0	2866664..2866864	+	66	170082244	ypjJ	ECDH10B_2812	-	hypothetical protein
2582	 54.40	0	2866902..2867219	+	105	170082245	yfjZ	ECDH10B_2813	-	CP4-57 prophage; antitoxin of the YpjF-YfjZ toxin-antitoxin system
2583	 47.58	0	2867240..2867569	+	109	170082246	ypjF	ECDH10B_2814	-	CP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system
2584	 54.29	0	2878772..2879749	+	325	170082247	ygaT	ECDH10B_2826	-	hypothetical protein
2585	 57.68	+1	2879769..2881037	+	422	170082248	ygaF	ECDH10B_2827	-	hypothetical protein
2586	 59.33	+1	2882522..2883802	+	426	170082249	gabT	ECDH10B_2829	-	4-aminobutyrate aminotransferase, PLP-dependent
2587	 51.32	0	2884040..2885440	+	466	170082250	gabP	ECDH10B_2830	-	gamma-aminobutyrate transporter
2588	 53.54	0	2885461..2886123	+	220	170082251	csiR	ECDH10B_2831	-	DNA-binding transcriptional dual regulator
2589	 48.44	0	2886124..2886573	-	149	170082252	ygaU	ECDH10B_2832	-	hypothetical protein
2590	 50.94	0	2886657..2886815	-	52	170082253	yqaE	ECDH10B_2833	-	hypothetical protein
2591	 53.00	0	2886998..2887297	+	99	170082254	ygaV	ECDH10B_2834	-	DNA-binding transcriptional regulator
2592	 45.90	-1	2887307..2887831	+	174	170082255	ygaP	ECDH10B_2835	-	inner membrane protein with hydrolase activity
2593	 48.15	0	2887878..2888282	-	134	170082256	stpA	ECDH10B_2836	-	DNA binding protein, nucleoid-associated
2594	 49.11	0	2888951..2889400	+	149	170082257	ygaW	ECDH10B_2837	-	inner membrane protein
2595	 46.96	0	2889437..2889781	-	114	170082258	ygaC	ECDH10B_2838	-	hypothetical protein
2596	 53.25	0	2890510..2890755	+	81	170082259	nrdH	ECDH10B_2840	-	glutaredoxin-like protein
2597	 55.96	+1	2890752..2891162	+	136	170082260	nrdI	ECDH10B_2841	-	NrdI
2598	 51.84	0	2891135..2893279	+	714	170082261	nrdE	ECDH10B_2842	-	ribonucleoside-diphosphate reductase 2, alpha subunit
2599	 48.23	0	2893289..2894248	+	319	170082262	nrdF	ECDH10B_2843	-	ribonucleoside-diphosphate reductase 2, beta subunit, ferritin-like protein
2600	 58.12	+1	2896574..2897638	+	354	170082263	proW	ECDH10B_2844	-	glycine betaine ABC transporter membrane protein
2601	 52.57	0	2897696..2898688	+	330	170082264	proX	ECDH10B_2845	-	glycine betaine ABC transporter periplasmic-binding protein
2602	 52.85	0	2900181..2900918	+	245	170082265	ygaZ	ECDH10B_2849	-	transporter
2603	 54.46	0	2900908..2901243	+	111	170082266	ygaH	ECDH10B_2850	-	inner membrane protein
2604	 53.37	0	2901991..2903163	+	390	170082267	emrA	ECDH10B_2852	-	multidrug efflux system
2605	 56.60	+1	2903180..2904718	+	512	170082268	emrB	ECDH10B_2853	-	multidrug efflux system protein
2606	 51.55	0	2904782..2905297	-	171	170082269	luxS	ECDH10B_2854	-	S-ribosylhomocysteinase
2607	 51.32	0	2905447..2907003	-	518	170082270	gshA	ECDH10B_2856	-	gamma-glutamate-cysteine ligase
2608	 49.42	0	2907076..2907504	-	142	170082271	yqaA	ECDH10B_2857	-	inner membrane protein
2609	 53.44	0	2907501..2908067	-	188	170082272	yqaB	ECDH10B_2858	-	fructose-1-P and 6-phosphogluconate phosphatase
2610	 49.46	0	2909525..2909710	-	61	170082273	csrA	ECDH10B_2864	-	pleiotropic regulatory protein for carbon source metabolism
2611	 53.63	0	2909945..2912575	-	876	170082274	alaS	ECDH10B_2865	-	alanyl-tRNA synthetase
2612	 51.90	0	2912703..2913203	-	166	170082275	recX	ECDH10B_2866	-	inhibitor of RecA
2613	 56.63	+1	2914413..2914910	-	165	170082276	ygaD	ECDH10B_2868	-	hypothetical protein
2614	 55.16	0	2915055..2916140	-	361	170082277	mltB	ECDH10B_2869	-	membrane-bound lytic murein transglycosylase B
2615	 50.18	0	2916396..2916959	+	187	170082278	srlA	ECDH10B_2870	-	glucitol/sorbitol-specific enzyme IIC component of PTS
2616	 54.69	0	2916956..2917915	+	319	170082279	srlE	ECDH10B_2871	-	glucitol/sorbitol-specific enzyme IIB component of PTS
2617	 55.11	0	2917926..2918297	+	123	170082280	srlB	ECDH10B_2872	-	glucitol/sorbitol-specific enzyme IIA component of PTS
2618	 53.33	0	2918301..2919080	+	259	170082281	srlD	ECDH10B_2873	-	sorbitol-6-phosphate de