IslandPathversion 1.0

IslandPath Analysis: Escherichia coli str. K12 substr. DH10B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.13 STD DEV: 4.76
Escherichia coli str. K-12 substr. DH10B, complete genome - 1..4686137
4126 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2454	 54.12	0	2720745..2722322	-	525	170082117	guaA	ECDH10B_2673	-	GMP synthetase (glutamine aminotransferase)
2455	 54.67	0	2722391..2723857	-	488	170082118	guaB	ECDH10B_2674	-	IMP dehydrogenase
2456	 53.25	0	2724019..2725389	+	456	170082119	xseA	ECDH10B_2675	-	exonuclease VII, large subunit
2457	 47.69	0	2725386..2725601	-	71	170082120	yfgJ	ECDH10B_2676	-	hypothetical protein
2458	 52.21	0	2725671..2727143	-	490	170082121	der	ECDH10B_2677	-	GTP-binding protein
2459	 53.27	0	2727261..2728439	-	392	170082122	yfgL	ECDH10B_2678	-	protein assembly complex, lipoprotein component
2460	 49.76	0	2728450..2729070	-	206	170082123	yfgM	ECDH10B_2679	-	hypothetical protein
2461	 54.75	0	2729088..2730362	-	424	170082124	hisS	ECDH10B_2680	-	histidyl tRNA synthetase
2462	 53.26	0	2730473..2731591	-	372	170082125	ispG	ECDH10B_2681	-	1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase
2463	 54.54	0	2731618..2732631	-	337	170082126	yfgA	ECDH10B_2682	-	hypothetical protein
2464	 52.99	0	2732916..2734070	-	384	170082127	yfgB	ECDH10B_2683	-	hypothetical protein
2465	 52.31	0	2734220..2734651	-	143	170082128	ndk	ECDH10B_2684	-	multifunctional nucleoside diphosphate kinase and apyrimidinic endonuclease and 3'-phosphodiesterase
2466	 56.72	+1	2734800..2737112	-	770	170082129	pbpC	ECDH10B_2685	-	fused transglycosylase; transpeptidase
2467	 52.96	0	2737113..2742074	-	1653	170082130	yfhM	ECDH10B_2686	-	hypothetical protein
2468	 53.19	0	2742281..2743126	+	281	170082131	sseA	ECDH10B_2687	-	3-mercaptopyruvate sulfurtransferase
2469	 47.10	0	2743944..2744720	-	258	170082132	sseB	ECDH10B_2689	-	rhodanase-like enzyme, sulfur transfer from thiosulfate
2470	 56.85	+1	2744862..2746145	-	427	170082133	pepB	ECDH10B_2690	-	aminopeptidase B
2471	 50.25	0	2746323..2746523	-	66	170082134	yfhJ	ECDH10B_2691	-	hypothetical protein
2472	 51.79	0	2746535..2746870	-	111	170082135	fdx	ECDH10B_2692	-	[2Fe-2S] ferredoxin
2473	 57.70	+1	2746872..2748722	-	616	170082136	hscA	ECDH10B_2693	-	DnaK-like molecular chaperone specific for IscU
2474	 52.33	0	2748739..2749254	-	171	170082137	hscB	ECDH10B_2694	-	DnaJ-like molecular chaperone specific for IscU
2475	 51.54	0	2749350..2749673	-	107	170082138	iscA	ECDH10B_2695	-	FeS cluster assembly protein
2476	 50.13	0	2749690..2750076	-	128	170082139	iscU	ECDH10B_2696	-	scaffold protein
2477	 53.33	0	2750104..2751318	-	404	170082140	iscS	ECDH10B_2697	-	cysteine desulfurase (tRNA sulfurtransferase), PLP-dependent
2478	 53.58	0	2751430..2751918	-	162	170082141	iscR	ECDH10B_2698	-	Fe-S cluster-containing transcription factor
2479	 55.47	0	2752370..2753110	-	246	170082142	yfhQ	ECDH10B_2699	-	methyltransferase
2480	 54.48	0	2753229..2754032	+	267	170082143	suhB	ECDH10B_2700	-	inositol monophosphatase
2481	 50.11	0	2754150..2755031	+	293	170082144	yfhR	ECDH10B_2701	-	peptidase
2482	 51.52	0	2755222..2756502	+	426	170082145	csiE	ECDH10B_2702	-	stationary phase inducible protein
2483	 56.49	+1	2756494..2757633	-	379	170082146	hcaT	ECDH10B_2703	-	3-phenylpropionic transporter
2484	 49.83	0	2757793..2758683	-	296	170082147	hcaR	ECDH10B_2704	-	DNA-binding transcriptional activator of 3-phenylpropionic acid catabolism
2485	 52.94	0	2758819..2760180	+	453	170082148	hcaE	ECDH10B_2705	-	3-phenylpropionate dioxygenase, large (alpha) subunit
2486	 52.22	0	2760177..2760695	+	172	170082149	hcaF	ECDH10B_2706	-	3-phenylpropionate dioxygenase, small (beta) subunit
2487	 55.45	0	2760695..2761015	+	106	170082150	hcaC	ECDH10B_2707	-	3-phenylpropionate dioxygenase ferredoxin subunit
2488	 56.09	+1	2761012..2761824	+	270	170082151	hcaB	ECDH10B_2708	-	2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase
2489	 54.03	0	2761834..2763036	+	400	170082152	hcaD	ECDH10B_2709	-	phenylpropionate dioxygenase, ferredoxin reductase subunit
2490	 49.09	0	2763061..2763555	+	164	170082153	yphA	ECDH10B_2710	-	inner membrane protein
2491	 55.21	0	2763603..2764475	-	290	170082154	yphB	ECDH10B_2711	-	hypothetical protein
2492	 55.18	0	2764487..2765548	-	353	170082155	yphC	ECDH10B_2712	-	oxidoreductase, Zn-dependent and NAD(P)-binding
2493	 56.16	+1	2765614..2766612	-	332	170082156	yphD	ECDH10B_2713	-	sugar ABC transporter membrane protein
2494	 56.08	+1	2766637..2768148	-	503	170082157	yphE	ECDH10B_2714	-	sugar ABC transporter ATP-binding protein
2495	 46.14	-1	2768171..2769154	-	327	170082158	yphF	ECDH10B_2715	-	sugar ABC transporter periplasmic-binding protein
2496	 54.88	0	2769251..2772532	-	1093	170082159	yphG	ECDH10B_2716	-	hypothetical protein
2497	 50.59	0	2772650..2773843	+	397	170082160	yphH	ECDH10B_2717	-	DNA-binding transcriptional regulator
2498	 53.35	0	2774041..2775294	-	417	170082161	glyA	ECDH10B_2718	-	serine hydroxymethyltransferase
2499	 52.48	0	2775622..2776812	+	396	170082162	hmp	ECDH10B_2719	-	fused nitric oxide dioxygenase; dihydropteridine reductase 2
2500	 51.03	0	2776857..2777195	-	112	170082163	glnB	ECDH10B_2720	-	regulatory protein P-II for glutamine synthetase
2501	 54.76	0	2777256..2778590	-	444	170082164	yfhA	ECDH10B_2721	-	DNA-binding response regulator in two-component system
2502	 54.20	0	2778580..2779293	-	237	170082165	yfhG	ECDH10B_2722	-	hypothetical protein
2503	 53.15	0	2779458..2780885	-	475	170082166	yfhK	ECDH10B_2723	-	sensory kinase in two-component system
2504	 56.89	+1	2781443..2785330	-	1295	170082167	purL	ECDH10B_2725	-	phosphoribosylformyl-glycineamide synthetase
2505	 50.39	0	2785726..2787144	+	472	170082168	yfhD	ECDH10B_2726	-	transglycosylase
2506	 54.76	0	2787141..2787644	-	167	170082169	tadA	ECDH10B_2727	-	tRNA-specific adenosine deaminase
2507	 52.20	0	2787702..2788337	-	211	170082170	yfhB	ECDH10B_2728	-	hypothetical protein
2508	 51.71	0	2788546..2789394	+	282	170082171	yfhH	ECDH10B_2729	-	DNA-binding transcriptional regulator
2509	 44.83	-1	2789450..2789710	+	86	170082172	yfhL	ECDH10B_2730	-	4Fe-4S cluster-containing protein
2510	 56.42	+1	2790785..2791516	-	243	170082173	pdxJ	ECDH10B_2732	-	pyridoxine 5'-phosphate synthase
2511	 54.05	0	2791528..2792256	-	242	170082174	recO	ECDH10B_2733	-	gap repair protein
2512	 52.32	0	2792268..2793173	-	301	170082175	era	ECDH10B_2734	-	membrane-associated, 16S rRNA-binding GTPase
2513	 50.66	0	2793170..2793850	-	226	170082176	rnc	ECDH10B_2735	-	RNase III
2514	 52.00	0	2794122..2795096	-	324	170082177	lepB	ECDH10B_2736	-	leader peptidase (signal peptidase I)
2515	 53.72	0	2795112..2796911	-	599	170082178	lepA	ECDH10B_2737	-	GTP-binding membrane protein
2516	 54.79	0	2797109..2797588	-	159	170082179	rseC	ECDH10B_2738	-	RseC
2517	 50.78	0	2797585..2798541	-	318	170082180	rseB	ECDH10B_2739	-	anti-sigma factor
2518	 52.23	0	2798541..2799191	-	216	170082181	rseA	ECDH10B_2740	-	anti-sigma factor
2519	 48.78	0	2799224..2799799	-	191	170082182	rpoE	ECDH10B_2741	-	RNA polymerase, sigma 24 (sigma E) factor
2520	 53.17	0	2800207..2801829	+	540	170082183	nadB	ECDH10B_2742	-	quinolinate synthase, L-aspartate oxidase (B protein) subunit
2521	 52.44	0	2801814..2802551	-	245	170082184	yfiC	ECDH10B_2743	-	S-adenosyl-L-methionine-dependent methyltransferase
2522	 54.76	0	2802683..2804017	+	444	170082185	srmB	ECDH10B_2744	-	ATP-dependent RNA helicase
2523	 49.66	0	2804226..2805107	-	293	170082186	yfiE	ECDH10B_2745	-	DNA-binding transcriptional regulator
2524	 51.19	0	2805210..2805797	+	195	170082187	yfiK	ECDH10B_2746	-	neutral amino-acid efflux system
2525	 47.92	0	2805853..2806236	-	127	170082188	yfiD	ECDH10B_2747	-	pyruvate formate lyase subunit
2526	 52.17	0	2806541..2807230	+	229	170082189	ung	ECDH10B_2748	-	uracil-DNA-glycosylase
2527	 56.26	+1	2807278..2808315	-	345	170082190	yfiF	ECDH10B_2749	-	methyltransferase
2528	 49.52	0	2808522..2808941	+	139	170082191	trxC	ECDH10B_2750	-	thioredoxin 2
2529	 52.36	0	2809010..2809708	+	232	170082192	yfiP	ECDH10B_2751	-	hypothetical protein
2530	 54.30	0	2809740..2812400	+	886	170082193	yfiQ	ECDH10B_2752	-	fused acyl-CoA synthetase: NAD(P)-binding subunit; ATP-binding subunit
2531	 48.89	0	2812514..2813869	+	451	170082194	pssA	ECDH10B_2753	-	phosphatidylserine synthase (CDP-diacylglycerol-serine O-phosphatidyltransferase)
2532	 56.41	+1	2813966..2814238	+	90	170082195	yfiM	ECDH10B_2754	-	hypothetical protein
2533	 48.73	0	2814235..2815533	-	432	170082196	kgtP	ECDH10B_2755	-	alpha-ketoglutarate transporter
2534	 51.44	0	2821387..2823960	-	857	170082197	clpB	ECDH10B_2760	-	protein disaggregation chaperone
2535	 54.78	0	2824090..2824821	-	243	170082198	yfiH	ECDH10B_2761	-	hypothetical protein
2536	 52.80	0	2824818..2825798	-	326	170082199	rluD	ECDH10B_2762	-	23S rRNA pseudouridine synthase
2537	 51.22	0	2825933..2826670	+	245	170082200	yfiO	ECDH10B_2763	-	lipoprotein
2538	 46.20	-1	2826941..2827282	+	113	170082201	yfiA	ECDH10B_2764	-	cold shock protein associated with 30S ribosomal subunit
2539	 37.50	-2	2827386..2827433	+	15	170082202	pheL	ECDH10B_2765	-	pheA gene leader peptide
2540	 49.18	0	2827532..2828692	+	386	170082203	pheA	ECDH10B_2766	-	bifunctional chorismate mutase P and prephenate dehydratase
2541	 52.32	0	2828735..2829856	-	373	170082204	tyrA	ECDH10B_2767	-	bifunctional chorismate mutase T and prephenate dehydrogenase
2542	 51.82	0	2829867..2830937	-	356	170082205	aroF	ECDH10B_2768	-	3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible
2543	 45.63	-1	2831147..2831512	+	121	170082206	yfiL	ECDH10B_2769	-	hypothetical protein
2544	 45.66	-1	2831662..2832180	+	172	170082207	yfiR	ECDH10B_2770	-	hypothetical protein
2545	 48.33	0	2832170..2833396	+	408	170082208	yfiN	ECDH10B_2771	-	diguanylate cyclase
2546	 51.14	0	2833412..2833894	+	160	170082209	yfiB	ECDH10B_2772